Wall clock time and date at job start Sun Mar 29 2020 22:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33000 * 119.99935 * 2 1 4 4 C 1.47102 * 120.00053 * 173.03099 * 3 2 1 5 5 O 1.21617 * 119.99881 * 352.96705 * 4 3 2 6 6 N 1.34775 * 119.99773 * 172.97395 * 4 3 2 7 7 C 1.46499 * 119.99584 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.47072 * 180.02562 * 7 6 4 9 9 N 1.46505 * 109.47283 * 180.02562 * 8 7 6 10 10 C 1.46494 * 120.00370 * 89.99523 * 9 8 7 11 11 C 1.36934 * 119.99319 * 269.99924 * 9 8 7 12 12 H 1.08003 * 120.00531 * 22.54110 * 11 9 8 13 13 C 1.38817 * 119.99744 * 202.54290 * 11 9 8 14 14 N 1.31622 * 119.99873 * 16.79646 * 13 11 9 15 15 Si 1.86795 * 120.00157 * 196.79713 * 13 11 9 16 16 H 1.48508 * 109.47206 * 60.00243 * 15 13 11 17 17 H 1.48495 * 109.47197 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47317 * 299.99997 * 15 13 11 19 19 C 1.50699 * 120.00010 * 179.97438 * 2 1 3 20 20 C 1.52993 * 117.50082 * 0.51832 * 19 2 1 21 21 C 1.52991 * 117.50085 * 291.89119 * 19 2 1 22 22 H 1.08998 * 109.47180 * 90.00158 * 1 2 3 23 23 H 1.09000 * 109.47062 * 210.00218 * 1 2 3 24 24 H 1.08999 * 109.47550 * 330.00029 * 1 2 3 25 25 H 1.07997 * 120.00135 * 353.02776 * 3 2 1 26 26 H 0.96996 * 120.00156 * 359.97438 * 6 4 3 27 27 H 1.09002 * 109.47753 * 299.99836 * 7 6 4 28 28 H 1.09003 * 109.47383 * 59.99839 * 7 6 4 29 29 H 1.09002 * 109.46674 * 299.99882 * 8 7 6 30 30 H 1.08995 * 109.47417 * 59.99940 * 8 7 6 31 31 H 1.09002 * 109.47290 * 94.03697 * 10 9 8 32 32 H 1.08998 * 109.47391 * 214.03991 * 10 9 8 33 33 H 1.09003 * 109.47174 * 334.04316 * 10 9 8 34 34 H 0.96996 * 120.00054 * 179.97438 * 14 13 11 35 35 H 1.09004 * 115.54517 * 146.22089 * 19 2 1 36 36 H 1.09002 * 117.50032 * 359.97438 * 20 19 2 37 37 H 1.09003 * 117.50180 * 145.02012 * 20 19 2 38 38 H 1.08999 * 117.50086 * 214.98175 * 21 19 2 39 39 H 1.08995 * 117.49927 * 359.97438 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6348 1.1566 0.1546 5 8 4.2227 0.1229 0.4099 6 7 4.3236 2.3064 0.0134 7 6 5.7804 2.3111 0.1679 8 6 6.3107 3.7312 -0.0400 9 7 7.7676 3.7359 0.1139 10 6 8.6279 3.5073 -1.0496 11 6 8.3252 3.9539 1.3454 12 1 7.7505 3.7635 2.2398 13 6 9.6291 4.4197 1.4443 14 7 10.2155 4.9616 0.3979 15 14 10.5515 4.2774 3.0624 16 1 10.6509 2.8477 3.4515 17 1 11.9156 4.8432 2.9060 18 1 9.8218 5.0276 4.1158 19 6 2.2605 -1.3051 0.0006 20 6 1.4385 -2.5954 -0.0111 21 6 2.1755 -2.1693 1.2602 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5138 25 1 1.6380 2.0836 -0.1135 26 1 3.8548 3.1307 -0.1905 27 1 6.0408 1.9696 1.1697 28 1 6.2263 1.6447 -0.5705 29 1 6.0504 4.0731 -1.0418 30 1 5.8648 4.3973 0.6986 31 1 8.9162 4.4654 -1.4822 32 1 9.5212 2.9649 -0.7401 33 1 8.0863 2.9217 -1.7925 34 1 11.1265 5.2874 0.4671 35 1 3.2034 -1.3037 -0.5462 36 1 0.3527 -2.5004 -0.0188 37 1 1.8405 -3.4433 -0.5657 38 1 3.0624 -2.7368 1.5419 39 1 1.5750 -1.7938 2.0886 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663146169.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:22 Heat of formation + Delta-G solvation = 4.603642 kcal Electronic energy + Delta-G solvation = -18131.073537 eV Core-core repulsion = 15267.825768 eV Total energy + Delta-G solvation = -2863.247770 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.85482 -38.74828 -37.75810 -35.61814 -34.31725 -33.27426 -30.26027 -28.57221 -27.90910 -25.38716 -24.00507 -23.19313 -22.40623 -21.75747 -19.56558 -18.76327 -17.99329 -17.25841 -16.79110 -16.40844 -16.03867 -15.59775 -15.39840 -15.06104 -14.44463 -14.34337 -14.10305 -13.88663 -13.86894 -13.11964 -13.09098 -12.78291 -12.68592 -12.51630 -12.47402 -12.22195 -12.16341 -11.96452 -11.84075 -11.66467 -11.29755 -10.69132 -10.51902 -10.09590 -9.68401 -8.86139 -7.88166 -5.36366 0.40559 1.44475 1.48178 1.54470 2.29192 2.33666 2.53987 3.06278 3.25646 3.63499 3.74344 3.92568 4.05583 4.16965 4.21773 4.24254 4.33751 4.46663 4.64519 4.68387 4.75946 4.78526 4.84471 4.97365 5.04059 5.08389 5.14133 5.23421 5.27251 5.30602 5.45854 5.55772 5.60236 5.64563 5.68973 6.28433 6.72464 7.09962 7.39205 7.80996 8.24239 9.15581 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.036007 B = 0.003737 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.446256 B = 7491.110900 C = 7790.861726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.000 4.000 3 C -0.237 4.237 4 C 0.529 3.471 5 O -0.584 6.584 6 N -0.712 5.712 7 C 0.119 3.881 8 C 0.147 3.853 9 N -0.616 5.616 10 C 0.173 3.827 11 C -0.273 4.273 12 H 0.068 0.932 13 C -0.048 4.048 14 N -0.934 5.934 15 Si 0.967 3.033 16 H -0.283 1.283 17 H -0.291 1.291 18 H -0.272 1.272 19 C -0.142 4.142 20 C -0.163 4.163 21 C -0.166 4.166 22 H 0.095 0.905 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.161 0.839 26 H 0.414 0.586 27 H 0.034 0.966 28 H 0.040 0.960 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.011 0.989 32 H 0.014 0.986 33 H 0.032 0.968 34 H 0.250 0.750 35 H 0.095 0.905 36 H 0.122 0.878 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.381 -8.879 -2.455 24.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.002 4.002 3 C -0.257 4.257 4 C 0.320 3.680 5 O -0.467 6.467 6 N -0.364 5.364 7 C -0.008 4.008 8 C 0.020 3.980 9 N -0.339 5.339 10 C 0.028 3.972 11 C -0.403 4.403 12 H 0.086 0.914 13 C -0.244 4.244 14 N -0.579 5.579 15 Si 0.794 3.206 16 H -0.210 1.210 17 H -0.217 1.217 18 H -0.197 1.197 19 C -0.160 4.160 20 C -0.200 4.200 21 C -0.203 4.203 22 H 0.114 0.886 23 H 0.102 0.898 24 H 0.106 0.894 25 H 0.179 0.821 26 H 0.251 0.749 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.029 0.971 32 H 0.032 0.968 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.113 0.887 36 H 0.140 0.860 37 H 0.117 0.883 38 H 0.100 0.900 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -21.765 -9.486 -2.307 23.854 hybrid contribution 1.270 0.424 0.666 1.496 sum -20.494 -9.061 -1.641 22.468 Atomic orbital electron populations 1.21083 0.87992 1.04539 1.04349 1.22155 0.97137 0.92243 0.88643 1.22475 0.91136 1.00522 1.11596 1.19302 0.89397 0.82862 0.76399 1.90742 1.72447 1.33059 1.50411 1.45799 1.07468 1.11364 1.71801 1.21767 0.79530 1.00101 0.99451 1.20941 0.83638 0.92918 1.00455 1.44018 1.00859 1.82923 1.06124 1.20583 0.92290 0.96960 0.87394 1.19452 0.97642 1.37806 0.85383 0.91383 1.25744 0.99590 0.98549 1.00500 1.70222 1.13657 1.42794 1.31260 0.85356 0.77623 0.77744 0.79839 1.20970 1.21667 1.19735 1.21341 1.00332 0.90190 1.04114 1.23236 0.99901 0.96860 0.99974 1.22813 1.02730 1.02763 0.92020 0.88611 0.89795 0.89420 0.82140 0.74919 0.94723 0.94143 0.91745 0.92353 0.97057 0.96762 0.94993 0.94046 0.88700 0.86013 0.88300 0.90042 0.88176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 9.52 71.23 0.68 -0.61 16 2 C 0.00 0.00 5.80 -17.62 -0.10 -0.10 16 3 C -0.24 -5.09 9.62 23.43 0.23 -4.86 16 4 C 0.53 16.48 7.66 86.57 0.66 17.15 16 5 O -0.58 -23.10 13.37 -4.09 -0.05 -23.15 16 6 N -0.71 -20.96 5.55 -466.70 -2.59 -23.55 16 7 C 0.12 4.51 6.00 86.38 0.52 5.03 16 8 C 0.15 5.85 5.76 86.38 0.50 6.35 16 9 N -0.62 -31.55 2.92 -726.93 -2.12 -33.67 16 10 C 0.17 8.73 9.00 127.77 1.15 9.88 16 11 C -0.27 -15.37 9.63 84.04 0.81 -14.56 16 12 H 0.07 3.75 7.88 -2.91 -0.02 3.72 16 13 C -0.05 -2.75 5.01 84.86 0.43 -2.32 16 14 N -0.93 -55.91 10.92 21.65 0.24 -55.68 16 15 Si 0.97 45.97 29.59 68.60 2.03 48.00 16 16 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 17 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 18 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 19 C -0.14 -3.38 4.28 -11.55 -0.05 -3.43 16 20 C -0.16 -2.73 9.80 30.59 0.30 -2.43 16 21 C -0.17 -3.63 10.23 30.59 0.31 -3.32 16 22 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 23 H 0.08 0.72 6.32 -2.39 -0.02 0.71 16 24 H 0.09 0.69 8.07 -2.39 -0.02 0.67 16 25 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 26 H 0.41 9.04 8.46 -92.71 -0.78 8.25 16 27 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.06 2.26 8.07 -2.39 -0.02 2.24 16 30 H 0.06 2.25 8.04 -2.39 -0.02 2.23 16 31 H 0.01 0.61 7.41 -2.39 -0.02 0.59 16 32 H 0.01 0.76 7.34 -2.39 -0.02 0.74 16 33 H 0.03 1.37 8.04 -2.39 -0.02 1.35 16 34 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 35 H 0.10 2.99 6.34 -2.38 -0.02 2.97 16 36 H 0.12 1.38 6.28 -2.39 -0.01 1.36 16 37 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -71.65 323.46 3.17 -68.48 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.25 Total: 12.79 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 5.43 Total: 6.78 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -4.48 Total: -112.90 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.05 Total: -23.15 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -71.65 3.17 -68.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663146169.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.087 kcal (2) G-P(sol) polarization free energy of solvation -71.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds