Wall clock time and date at job start Sun Mar 29 2020 22:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.32990 * 120.00058 * 2 1 4 4 C 1.47111 * 119.99925 * 352.88715 * 3 2 1 5 5 O 1.21613 * 119.99864 * 353.41055 * 4 3 2 6 6 N 1.34776 * 119.99754 * 173.13302 * 4 3 2 7 7 C 1.46501 * 119.99841 * 180.27415 * 6 4 3 8 8 C 1.52997 * 109.46977 * 180.02562 * 7 6 4 9 9 N 1.46501 * 109.46977 * 180.02562 * 8 7 6 10 10 C 1.46499 * 120.00009 * 269.99702 * 9 8 7 11 11 C 1.36939 * 119.99968 * 90.00006 * 9 8 7 12 12 H 1.07998 * 119.99859 * 20.37018 * 11 9 8 13 13 C 1.38805 * 120.00107 * 200.37070 * 11 9 8 14 14 N 1.31624 * 119.99835 * 8.54211 * 13 11 9 15 15 Si 1.86799 * 120.00359 * 188.54400 * 13 11 9 16 16 H 1.48507 * 109.46928 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47164 * 119.99874 * 15 13 11 18 18 H 1.48503 * 109.47341 * 240.00078 * 15 13 11 19 19 C 1.50694 * 119.99907 * 180.02562 * 2 1 3 20 20 C 1.53006 * 117.49928 * 8.74270 * 19 2 1 21 21 C 1.53005 * 117.49631 * 300.08604 * 19 2 1 22 22 H 1.09008 * 109.47029 * 84.41155 * 1 2 3 23 23 H 1.08992 * 109.47325 * 204.40951 * 1 2 3 24 24 H 1.08999 * 109.47129 * 324.41584 * 1 2 3 25 25 H 1.07997 * 120.00354 * 172.87834 * 3 2 1 26 26 H 0.96998 * 119.99805 * 0.27010 * 6 4 3 27 27 H 1.08990 * 109.47048 * 299.99848 * 7 6 4 28 28 H 1.09000 * 109.47142 * 60.00303 * 7 6 4 29 29 H 1.09003 * 109.47090 * 300.00136 * 8 7 6 30 30 H 1.08994 * 109.47615 * 59.99948 * 8 7 6 31 31 H 1.09000 * 109.46623 * 95.63033 * 10 9 8 32 32 H 1.09003 * 109.47068 * 215.63034 * 10 9 8 33 33 H 1.08996 * 109.47387 * 335.63180 * 10 9 8 34 34 H 0.97006 * 119.99902 * 180.02562 * 14 13 11 35 35 H 1.08995 * 115.55177 * 154.41740 * 19 2 1 36 36 H 1.08994 * 117.49958 * 0.02562 * 20 19 2 37 37 H 1.09005 * 117.49665 * 145.02570 * 20 19 2 38 38 H 1.09004 * 117.49947 * 214.98049 * 21 19 2 39 39 H 1.08998 * 117.50120 * 359.97438 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4450 2.4208 -0.1578 5 8 0.2548 2.4128 -0.4077 6 7 2.0967 3.5924 -0.0198 7 6 1.3714 4.8563 -0.1709 8 6 2.3368 6.0257 0.0322 9 7 1.6114 7.2896 -0.1183 10 6 1.5086 7.9228 -1.4354 11 6 1.0294 7.8791 0.9721 12 1 1.3610 7.6207 1.9669 13 6 0.0134 8.8088 0.7988 14 7 -0.5064 9.0008 -0.3951 15 14 -0.6164 9.7875 2.2600 16 1 0.1281 9.3880 3.4813 17 1 -0.4136 11.2371 2.0092 18 1 -2.0638 9.5159 2.4510 19 6 2.2605 -1.3051 -0.0006 20 6 1.4520 -2.5875 -0.2074 21 6 2.0245 -2.2575 1.1734 22 1 -0.3633 0.1001 -1.0229 23 1 -0.3633 -0.9357 0.4247 24 1 -0.3633 0.8357 0.5980 25 1 3.2458 1.1554 0.1159 26 1 3.0459 3.5988 0.1796 27 1 0.9408 4.9107 -1.1707 28 1 0.5749 4.9091 0.5712 29 1 2.7679 5.9715 1.0319 30 1 3.1331 5.9728 -0.7101 31 1 0.5661 7.6378 -1.9029 32 1 1.5448 9.0062 -1.3215 33 1 2.3384 7.5954 -2.0617 34 1 -1.2163 9.6507 -0.5163 35 1 3.2637 -1.2686 -0.4252 36 1 0.3753 -2.4872 -0.3435 37 1 1.9236 -3.3948 -0.7679 38 1 2.8724 -2.8479 1.5208 39 1 1.3246 -1.9400 1.9463 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663146170.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:25 Heat of formation + Delta-G solvation = 26.031096 kcal Electronic energy + Delta-G solvation = -18034.030454 eV Core-core repulsion = 15171.711848 eV Total energy + Delta-G solvation = -2862.318606 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.60937 -38.03701 -36.04026 -34.14051 -33.11314 -31.30075 -28.68123 -27.19319 -25.86172 -24.38667 -22.78902 -22.62799 -20.61010 -20.24308 -18.49994 -16.89577 -16.60097 -16.31736 -15.14950 -15.00653 -14.72257 -14.59455 -13.77800 -13.44733 -13.28518 -13.02908 -12.81669 -12.25076 -12.22904 -12.04545 -11.70066 -11.43976 -11.15219 -11.11280 -10.86985 -10.81108 -10.70522 -10.57608 -10.22292 -9.95250 -9.85759 -9.30331 -9.01992 -8.56388 -8.43550 -6.82569 -5.71495 -3.18142 1.37204 3.38837 3.44718 3.45455 3.47887 3.59298 3.73225 4.39333 4.52806 4.57437 4.65487 4.82371 5.02750 5.28468 5.31499 5.43397 5.51224 5.60731 5.67786 5.76644 5.79195 5.88424 5.91197 5.97126 6.13518 6.30831 6.47739 6.53471 6.73750 6.76708 6.81463 7.04724 7.44190 7.74707 7.84203 7.94518 8.38521 8.63540 9.23766 9.85581 10.32692 11.33084 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.039271 B = 0.003555 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.828711 B = 7874.509750 C = 8100.416783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.010 4.010 3 C -0.221 4.221 4 C 0.536 3.464 5 O -0.543 6.543 6 N -0.722 5.722 7 C 0.095 3.905 8 C 0.144 3.856 9 N -0.599 5.599 10 C 0.164 3.836 11 C -0.256 4.256 12 H 0.071 0.929 13 C 0.001 3.999 14 N -0.909 5.909 15 Si 0.908 3.092 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.289 1.289 19 C -0.131 4.131 20 C -0.173 4.173 21 C -0.168 4.168 22 H 0.079 0.921 23 H 0.052 0.948 24 H 0.092 0.908 25 H 0.124 0.876 26 H 0.395 0.605 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.042 0.958 31 H 0.029 0.971 32 H 0.050 0.950 33 H -0.004 1.004 34 H 0.252 0.748 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.747 -19.698 0.647 21.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.012 4.012 3 C -0.242 4.242 4 C 0.325 3.675 5 O -0.424 6.424 6 N -0.372 5.372 7 C -0.031 4.031 8 C 0.016 3.984 9 N -0.322 5.322 10 C 0.020 3.980 11 C -0.386 4.386 12 H 0.089 0.911 13 C -0.197 4.197 14 N -0.554 5.554 15 Si 0.738 3.262 16 H -0.203 1.203 17 H -0.216 1.216 18 H -0.216 1.216 19 C -0.149 4.149 20 C -0.210 4.210 21 C -0.205 4.205 22 H 0.097 0.903 23 H 0.071 0.929 24 H 0.110 0.890 25 H 0.142 0.858 26 H 0.228 0.772 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.014 0.986 34 H 0.063 0.937 35 H 0.133 0.867 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.764 -19.486 0.409 20.631 hybrid contribution 0.086 0.557 0.768 0.953 sum 6.850 -18.929 1.177 20.165 Atomic orbital electron populations 1.21148 0.90813 1.02204 1.03785 1.21734 0.96158 0.92218 0.91093 1.22377 1.00161 0.92209 1.09497 1.18519 0.87037 0.84287 0.77640 1.90761 1.15231 1.87655 1.48708 1.46090 1.12884 1.06446 1.71820 1.22477 0.97254 0.81526 1.01814 1.20979 0.92968 0.85357 0.99114 1.43953 1.62730 1.18951 1.06558 1.20879 0.95639 0.97452 0.84069 1.19298 1.13003 1.19567 0.86722 0.91083 1.25054 0.96887 1.00971 0.96816 1.70099 1.27818 1.36838 1.20667 0.86125 0.78525 0.79691 0.81842 1.20326 1.21613 1.21634 1.21272 1.00087 0.88857 1.04657 1.23077 1.00586 0.97715 0.99622 1.22995 1.03683 1.02072 0.91748 0.90267 0.92928 0.89001 0.85843 0.77233 0.92296 0.91450 0.93367 0.93996 0.95273 0.93114 0.98596 0.93732 0.86720 0.87967 0.88376 0.88318 0.88376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.55 7.90 36.01 0.28 -1.27 16 2 C -0.01 -0.12 5.81 -101.17 -0.59 -0.71 16 3 C -0.22 -2.76 9.67 -37.80 -0.37 -3.12 16 4 C 0.54 8.85 7.61 -12.66 -0.10 8.76 16 5 O -0.54 -10.98 13.30 5.27 0.07 -10.91 16 6 N -0.72 -11.40 5.55 -61.49 -0.34 -11.74 16 7 C 0.10 1.90 6.00 -4.04 -0.02 1.88 16 8 C 0.14 2.91 5.82 -4.04 -0.02 2.89 16 9 N -0.60 -15.25 2.93 -181.12 -0.53 -15.78 16 10 C 0.16 4.13 8.99 59.85 0.54 4.66 16 11 C -0.26 -7.12 9.71 -15.06 -0.15 -7.26 16 12 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 13 C 0.00 0.02 5.20 -17.43 -0.09 -0.07 16 14 N -0.91 -26.88 10.32 55.49 0.57 -26.30 16 15 Si 0.91 22.15 29.56 -169.99 -5.03 17.12 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 C -0.13 -1.14 6.01 -91.77 -0.55 -1.69 16 20 C -0.17 -1.28 9.77 -26.69 -0.26 -1.54 16 21 C -0.17 -1.24 10.10 -26.69 -0.27 -1.51 16 22 H 0.08 1.06 8.03 -51.92 -0.42 0.64 16 23 H 0.05 0.53 6.30 -51.93 -0.33 0.20 16 24 H 0.09 1.40 6.15 -51.93 -0.32 1.08 16 25 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 26 H 0.39 4.84 8.46 -40.82 -0.35 4.50 16 27 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 29 H 0.05 0.92 8.03 -51.93 -0.42 0.51 16 30 H 0.04 0.75 7.86 -51.93 -0.41 0.34 16 31 H 0.03 0.79 7.41 -51.93 -0.38 0.41 16 32 H 0.05 1.36 7.06 -51.93 -0.37 1.00 16 33 H 0.00 -0.10 7.83 -51.93 -0.41 -0.50 16 34 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.10 0.78 6.42 -51.93 -0.33 0.44 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 322.17 15.07 4.86 4.86 Total: -1.00 -32.19 322.17 -8.22 -40.41 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -6.23 Total: 1.34 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -1.59 Total: 1.01 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -0.30 Total: -53.83 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.07 Total: -10.91 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.19 -8.22 -40.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663146170.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.445 kcal (2) G-P(sol) polarization free energy of solvation -32.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds