Wall clock time and date at job start Sun Mar 29 2020 22:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.32990 * 120.00058 * 2 1 4 4 C 1.47111 * 119.99925 * 352.88715 * 3 2 1 5 5 O 1.21613 * 119.99864 * 353.41055 * 4 3 2 6 6 N 1.34776 * 119.99754 * 173.13302 * 4 3 2 7 7 C 1.46501 * 119.99841 * 180.27415 * 6 4 3 8 8 C 1.52997 * 109.46977 * 180.02562 * 7 6 4 9 9 N 1.46501 * 109.46977 * 180.02562 * 8 7 6 10 10 C 1.46499 * 120.00009 * 269.99702 * 9 8 7 11 11 C 1.36939 * 119.99968 * 90.00006 * 9 8 7 12 12 H 1.07998 * 119.99859 * 20.37018 * 11 9 8 13 13 C 1.38805 * 120.00107 * 200.37070 * 11 9 8 14 14 N 1.31624 * 119.99835 * 8.54211 * 13 11 9 15 15 Si 1.86799 * 120.00359 * 188.54400 * 13 11 9 16 16 H 1.48507 * 109.46928 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47164 * 119.99874 * 15 13 11 18 18 H 1.48503 * 109.47341 * 240.00078 * 15 13 11 19 19 C 1.50694 * 119.99907 * 180.02562 * 2 1 3 20 20 C 1.53006 * 117.49928 * 8.74270 * 19 2 1 21 21 C 1.53005 * 117.49631 * 300.08604 * 19 2 1 22 22 H 1.09008 * 109.47029 * 84.41155 * 1 2 3 23 23 H 1.08992 * 109.47325 * 204.40951 * 1 2 3 24 24 H 1.08999 * 109.47129 * 324.41584 * 1 2 3 25 25 H 1.07997 * 120.00354 * 172.87834 * 3 2 1 26 26 H 0.96998 * 119.99805 * 0.27010 * 6 4 3 27 27 H 1.08990 * 109.47048 * 299.99848 * 7 6 4 28 28 H 1.09000 * 109.47142 * 60.00303 * 7 6 4 29 29 H 1.09003 * 109.47090 * 300.00136 * 8 7 6 30 30 H 1.08994 * 109.47615 * 59.99948 * 8 7 6 31 31 H 1.09000 * 109.46623 * 95.63033 * 10 9 8 32 32 H 1.09003 * 109.47068 * 215.63034 * 10 9 8 33 33 H 1.08996 * 109.47387 * 335.63180 * 10 9 8 34 34 H 0.97006 * 119.99902 * 180.02562 * 14 13 11 35 35 H 1.08995 * 115.55177 * 154.41740 * 19 2 1 36 36 H 1.08994 * 117.49958 * 0.02562 * 20 19 2 37 37 H 1.09005 * 117.49665 * 145.02570 * 20 19 2 38 38 H 1.09004 * 117.49947 * 214.98049 * 21 19 2 39 39 H 1.08998 * 117.50120 * 359.97438 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4450 2.4208 -0.1578 5 8 0.2548 2.4128 -0.4077 6 7 2.0967 3.5924 -0.0198 7 6 1.3714 4.8563 -0.1709 8 6 2.3368 6.0257 0.0322 9 7 1.6114 7.2896 -0.1183 10 6 1.5086 7.9228 -1.4354 11 6 1.0294 7.8791 0.9721 12 1 1.3610 7.6207 1.9669 13 6 0.0134 8.8088 0.7988 14 7 -0.5064 9.0008 -0.3951 15 14 -0.6164 9.7875 2.2600 16 1 0.1281 9.3880 3.4813 17 1 -0.4136 11.2371 2.0092 18 1 -2.0638 9.5159 2.4510 19 6 2.2605 -1.3051 -0.0006 20 6 1.4520 -2.5875 -0.2074 21 6 2.0245 -2.2575 1.1734 22 1 -0.3633 0.1001 -1.0229 23 1 -0.3633 -0.9357 0.4247 24 1 -0.3633 0.8357 0.5980 25 1 3.2458 1.1554 0.1159 26 1 3.0459 3.5988 0.1796 27 1 0.9408 4.9107 -1.1707 28 1 0.5749 4.9091 0.5712 29 1 2.7679 5.9715 1.0319 30 1 3.1331 5.9728 -0.7101 31 1 0.5661 7.6378 -1.9029 32 1 1.5448 9.0062 -1.3215 33 1 2.3384 7.5954 -2.0617 34 1 -1.2163 9.6507 -0.5163 35 1 3.2637 -1.2686 -0.4252 36 1 0.3753 -2.4872 -0.3435 37 1 1.9236 -3.3948 -0.7679 38 1 2.8724 -2.8479 1.5208 39 1 1.3246 -1.9400 1.9463 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663146170.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:25 Heat of formation + Delta-G solvation = 5.484322 kcal Electronic energy + Delta-G solvation = -18034.921429 eV Core-core repulsion = 15171.711848 eV Total energy + Delta-G solvation = -2863.209581 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.87413 -38.86685 -37.84226 -35.74416 -34.09111 -33.27473 -30.24151 -28.44255 -27.93791 -25.67682 -24.22172 -23.19294 -22.38963 -21.50747 -19.48174 -18.81413 -17.93071 -17.21527 -16.81751 -16.51932 -16.21422 -15.62048 -15.43962 -15.05189 -14.68991 -14.40833 -14.14112 -13.83586 -13.74559 -13.08962 -12.87770 -12.82632 -12.64285 -12.49157 -12.45295 -12.21210 -12.05592 -12.01079 -11.83219 -11.74756 -11.31421 -10.69497 -10.62561 -10.16044 -9.70048 -8.90125 -7.85031 -5.34162 0.35883 1.45509 1.46448 1.57035 2.26658 2.29953 2.52585 3.03252 3.30277 3.56936 3.82253 3.88778 3.97977 4.14232 4.16357 4.23116 4.30218 4.37921 4.64703 4.67756 4.74469 4.83216 4.83654 5.01177 5.05419 5.11038 5.15352 5.16681 5.27586 5.35135 5.49786 5.55397 5.58391 5.61957 5.73866 6.29439 6.70272 7.11985 7.36676 7.82665 8.24157 9.18456 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.039271 B = 0.003555 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.828711 B = 7874.509750 C = 8100.416783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.000 4.000 3 C -0.231 4.231 4 C 0.528 3.472 5 O -0.590 6.590 6 N -0.709 5.709 7 C 0.117 3.883 8 C 0.147 3.853 9 N -0.618 5.618 10 C 0.177 3.823 11 C -0.264 4.264 12 H 0.078 0.922 13 C -0.058 4.058 14 N -0.942 5.942 15 Si 0.973 3.027 16 H -0.263 1.263 17 H -0.288 1.288 18 H -0.296 1.296 19 C -0.142 4.142 20 C -0.171 4.171 21 C -0.160 4.160 22 H 0.066 0.934 23 H 0.076 0.924 24 H 0.060 0.940 25 H 0.160 0.840 26 H 0.416 0.584 27 H 0.031 0.969 28 H 0.028 0.972 29 H 0.064 0.936 30 H 0.074 0.926 31 H -0.003 1.003 32 H 0.025 0.975 33 H 0.033 0.967 34 H 0.247 0.753 35 H 0.133 0.867 36 H 0.096 0.904 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.063 -21.771 1.606 24.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.002 4.002 3 C -0.252 4.252 4 C 0.320 3.680 5 O -0.474 6.474 6 N -0.361 5.361 7 C -0.010 4.010 8 C 0.020 3.980 9 N -0.341 5.341 10 C 0.032 3.968 11 C -0.394 4.394 12 H 0.095 0.905 13 C -0.253 4.253 14 N -0.589 5.589 15 Si 0.801 3.199 16 H -0.187 1.187 17 H -0.215 1.215 18 H -0.223 1.223 19 C -0.160 4.160 20 C -0.207 4.207 21 C -0.197 4.197 22 H 0.084 0.916 23 H 0.095 0.905 24 H 0.078 0.922 25 H 0.178 0.822 26 H 0.253 0.747 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.016 0.984 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.151 0.849 36 H 0.115 0.885 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.148 -21.595 1.390 23.494 hybrid contribution -0.636 1.070 0.457 1.326 sum 8.512 -20.525 1.847 22.297 Atomic orbital electron populations 1.21066 0.92208 1.02109 1.02537 1.22004 0.95541 0.93741 0.88929 1.22358 1.01564 0.89958 1.11273 1.19285 0.86700 0.85590 0.76463 1.90753 1.17496 1.88349 1.50754 1.45805 1.13719 1.04891 1.71685 1.21873 0.96501 0.83785 0.98877 1.21120 0.92773 0.82978 1.01093 1.44208 1.62858 1.21032 1.05984 1.20618 0.95549 0.96017 0.84611 1.19674 1.12681 1.19334 0.87717 0.90462 1.25872 0.97591 1.02466 0.99351 1.70285 1.28440 1.37587 1.22598 0.85108 0.77411 0.78049 0.79320 1.18714 1.21499 1.22294 1.21325 1.00744 0.87483 1.06413 1.23186 1.00338 0.97267 0.99940 1.23090 1.04124 1.01108 0.91333 0.91567 0.90514 0.92162 0.82228 0.74714 0.95049 0.95349 0.91723 0.90754 0.98438 0.95612 0.94841 0.94322 0.84885 0.88539 0.86530 0.86305 0.89002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.10 7.90 71.24 0.56 -2.54 16 2 C 0.00 0.00 5.81 -17.62 -0.10 -0.11 16 3 C -0.23 -5.32 9.67 23.43 0.23 -5.09 16 4 C 0.53 17.36 7.61 86.57 0.66 18.02 16 5 O -0.59 -24.84 13.30 -4.07 -0.05 -24.89 16 6 N -0.71 -21.73 5.55 -466.72 -2.59 -24.33 16 7 C 0.12 4.73 6.00 86.38 0.52 5.25 16 8 C 0.15 5.74 5.82 86.38 0.50 6.24 16 9 N -0.62 -31.38 2.93 -726.95 -2.13 -33.52 16 10 C 0.18 8.99 8.99 127.77 1.15 10.14 16 11 C -0.26 -14.69 9.71 84.03 0.82 -13.87 16 12 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 13 C -0.06 -3.35 5.20 84.86 0.44 -2.91 16 14 N -0.94 -57.35 10.32 21.65 0.22 -57.12 16 15 Si 0.97 46.05 29.56 68.60 2.03 48.07 16 16 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 17 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 18 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 19 C -0.14 -2.02 6.01 -11.54 -0.07 -2.09 16 20 C -0.17 -2.01 9.77 30.62 0.30 -1.71 16 21 C -0.16 -1.83 10.10 30.62 0.31 -1.52 16 22 H 0.07 1.83 8.03 -2.38 -0.02 1.81 16 23 H 0.08 1.49 6.30 -2.39 -0.02 1.48 16 24 H 0.06 1.93 6.15 -2.39 -0.01 1.91 16 25 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 26 H 0.42 9.13 8.46 -92.71 -0.78 8.35 16 27 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.06 2.33 8.03 -2.39 -0.02 2.31 16 30 H 0.07 2.44 7.86 -2.39 -0.02 2.42 16 31 H 0.00 -0.16 7.41 -2.39 -0.02 -0.17 16 32 H 0.03 1.40 7.06 -2.39 -0.02 1.38 16 33 H 0.03 1.41 7.83 -2.39 -0.02 1.39 16 34 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 35 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.10 1.25 6.42 -2.39 -0.02 1.23 16 37 H 0.12 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.12 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -72.50 322.17 3.04 -69.47 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.25 Total: 12.50 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 5.31 Total: 9.82 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -4.50 Total: -114.96 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.05 Total: -24.89 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.07 kcal Total: -72.50 3.04 -69.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663146170.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.952 kcal (2) G-P(sol) polarization free energy of solvation -72.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds