Wall clock time and date at job start Sun Mar 29 2020 23:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47118 * 2 1 4 4 N 1.46899 * 109.46619 * 240.00154 * 2 1 3 5 5 C 1.46897 * 111.00530 * 85.00218 * 4 2 1 6 6 C 1.52992 * 109.47553 * 179.97438 * 5 4 2 7 7 H 1.08999 * 109.47340 * 304.99906 * 6 5 4 8 8 C 1.47197 * 109.47381 * 64.99977 * 6 5 4 9 9 N 4.90943 * 82.27437 * 240.86540 * 2 1 3 10 10 C 1.53001 * 109.47274 * 185.00011 * 6 5 4 11 11 C 1.50697 * 109.47606 * 175.00010 * 10 6 5 12 12 H 1.08000 * 119.99494 * 359.97438 * 11 10 6 13 13 C 1.37868 * 120.00382 * 179.97438 * 11 10 6 14 14 N 1.31516 * 120.00137 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 120.00322 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47060 * 89.99943 * 15 13 11 17 17 H 1.48496 * 109.47474 * 210.00191 * 15 13 11 18 18 H 1.48504 * 109.46698 * 330.00045 * 15 13 11 19 19 C 1.52998 * 109.47084 * 120.00231 * 2 1 3 20 20 H 1.09000 * 110.54243 * 58.83377 * 19 2 1 21 21 C 1.54807 * 110.48933 * 296.21713 * 19 2 1 22 22 C 1.54994 * 102.09494 * 220.44755 * 21 19 2 23 23 O 1.44380 * 103.49110 * 37.01885 * 22 21 19 24 24 C 1.43739 * 106.97820 * 319.94499 * 23 22 21 25 25 H 1.08997 * 109.47250 * 59.99803 * 1 2 3 26 26 H 1.08994 * 109.47118 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46579 * 300.00047 * 1 2 3 28 28 H 1.00900 * 110.99857 * 208.95298 * 4 2 1 29 29 H 1.09002 * 109.46739 * 299.99820 * 5 4 2 30 30 H 1.09001 * 109.47396 * 59.99281 * 5 4 2 31 31 H 1.09003 * 109.47001 * 294.99854 * 10 6 5 32 32 H 1.08997 * 109.47358 * 54.99791 * 10 6 5 33 33 H 0.97001 * 120.00204 * 179.97438 * 14 13 11 34 34 H 1.09005 * 110.90346 * 338.64489 * 21 19 2 35 35 H 1.09000 * 110.90998 * 102.24225 * 21 19 2 36 36 H 1.08998 * 110.61564 * 278.52047 * 22 21 19 37 37 H 1.08994 * 110.75808 * 155.58946 * 22 21 19 38 38 H 1.09004 * 109.87903 * 267.08704 * 24 23 22 39 39 H 1.08997 * 110.00609 * 146.00467 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2225 -2.3470 6 6 2.5961 -0.5329 -3.5742 7 1 3.5518 -1.0011 -3.3390 8 6 1.6227 -1.5692 -3.9554 9 7 0.8701 -2.3685 -4.2494 10 6 2.7800 0.4460 -4.7356 11 6 3.4008 -0.2732 -5.9054 12 1 3.6407 -1.3234 -5.8280 13 6 3.6626 0.4094 -7.0743 14 7 3.3701 1.6882 -7.1687 15 14 4.4329 -0.4819 -8.5240 16 1 3.3617 -1.0451 -9.3847 17 1 5.2518 0.4725 -9.3136 18 1 5.2974 -1.5819 -8.0261 19 6 2.0400 -0.7213 1.2492 20 1 1.6695 -1.7460 1.2772 21 6 1.6167 0.0431 2.5271 22 6 2.8877 -0.0666 3.4072 23 8 3.9674 0.0459 2.4553 24 6 3.5804 -0.7033 1.2913 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 2.9172 -1.1205 -1.0288 29 1 1.0870 0.6163 -2.5525 30 1 2.7588 1.0462 -2.1183 31 1 1.8101 0.8476 -5.0293 32 1 3.4316 1.2620 -4.4234 33 1 3.5546 2.1685 -7.9909 34 1 1.3896 1.0847 2.2999 35 1 0.7675 -0.4428 3.0077 36 1 2.9217 -1.0311 3.9138 37 1 2.9278 0.7473 4.1311 38 1 3.9611 -1.7222 1.3628 39 1 3.9702 -0.2245 0.3930 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309451663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:35:25 Heat of formation + Delta-G solvation = -60.175192 kcal Electronic energy + Delta-G solvation = -18404.885660 eV Core-core repulsion = 15538.828869 eV Total energy + Delta-G solvation = -2866.056791 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.70656 -38.78104 -37.12158 -35.57980 -34.25981 -32.42651 -30.35549 -29.82409 -27.98713 -24.82448 -23.73138 -23.50626 -22.67028 -20.91462 -18.71329 -18.39624 -17.48020 -17.15644 -16.66004 -16.12801 -15.99597 -15.48440 -15.34452 -14.74880 -14.37090 -14.18146 -13.82189 -13.67452 -13.60896 -13.43569 -13.13835 -13.00714 -12.86218 -12.51559 -12.47481 -12.38668 -12.23535 -11.95861 -11.89336 -11.76991 -11.48076 -11.32510 -11.07001 -10.58498 -10.55930 -9.35206 -8.19655 -6.28047 1.40169 1.42359 1.51485 2.07081 2.13829 2.41472 3.04310 3.09301 3.16126 3.34940 3.58056 3.83371 3.95303 4.15718 4.29334 4.34194 4.38957 4.43114 4.51655 4.66776 4.74730 4.77977 4.82188 4.88026 4.89380 4.93115 5.04724 5.08951 5.12270 5.25036 5.42327 5.46678 5.61325 5.78896 5.93691 6.06945 6.21573 6.50893 6.83176 6.93649 7.40756 8.91329 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.032646 B = 0.004105 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.479043 B = 6819.907549 C = 7118.558303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.096 3.904 3 H 0.049 0.951 4 N -0.697 5.697 5 C 0.078 3.922 6 C 0.020 3.980 7 H 0.120 0.880 8 C 0.266 3.734 9 N -0.514 5.514 10 C 0.037 3.963 11 C -0.539 4.539 12 H 0.055 0.945 13 C 0.011 3.989 14 N -0.924 5.924 15 Si 0.948 3.052 16 H -0.284 1.284 17 H -0.279 1.279 18 H -0.263 1.263 19 C -0.118 4.118 20 H 0.094 0.906 21 C -0.142 4.142 22 C 0.040 3.960 23 O -0.405 6.405 24 C 0.043 3.957 25 H 0.041 0.959 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.347 0.653 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.000 1.000 32 H 0.035 0.965 33 H 0.264 0.736 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.103 0.897 38 H 0.068 0.932 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.125 -1.280 21.484 21.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.013 4.013 3 H 0.067 0.933 4 N -0.330 5.330 5 C -0.052 4.052 6 C -0.002 4.002 7 H 0.137 0.863 8 C -0.050 4.050 9 N -0.191 5.191 10 C -0.002 4.002 11 C -0.577 4.577 12 H 0.073 0.927 13 C -0.188 4.188 14 N -0.564 5.564 15 Si 0.774 3.226 16 H -0.210 1.210 17 H -0.204 1.204 18 H -0.187 1.187 19 C -0.137 4.137 20 H 0.112 0.888 21 C -0.180 4.180 22 C -0.036 4.036 23 O -0.324 6.324 24 C -0.034 4.034 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.094 0.906 28 H 0.168 0.832 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.018 0.982 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.121 0.879 38 H 0.086 0.914 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.663 -2.481 20.791 21.107 hybrid contribution 1.127 0.418 -1.059 1.602 sum -1.536 -2.063 19.732 19.899 Atomic orbital electron populations 1.21790 0.94306 1.01902 1.01561 1.21542 0.96085 0.95719 0.87966 0.93342 1.60542 1.34159 1.33775 1.04560 1.21907 1.01428 0.93645 0.88210 1.19173 0.93975 0.90757 0.96281 0.86259 1.29347 0.92836 0.92786 0.90023 1.81001 1.12768 1.13223 1.12155 1.18993 0.96425 0.93796 0.90958 1.21561 1.40808 0.96288 0.99064 0.92680 1.25714 0.96250 0.95518 1.01272 1.70033 1.48965 1.09349 1.28055 0.85699 0.78558 0.78777 0.79585 1.21037 1.20381 1.18744 1.22681 0.94828 1.01249 0.94900 0.88794 1.23178 0.98875 1.01603 0.94315 1.23754 0.84917 1.02682 0.92265 1.88856 1.42640 1.73393 1.27550 1.23351 0.94359 0.96670 0.89011 0.93974 0.92880 0.90631 0.83236 0.91265 0.91754 0.98176 0.94689 0.92718 0.90198 0.88322 0.91258 0.87877 0.91365 0.90252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.23 71.98 0.66 -2.03 16 2 C 0.10 1.87 1.91 44.92 0.09 1.95 16 3 H 0.05 0.98 7.79 -2.39 -0.02 0.96 16 4 N -0.70 -16.41 5.98 -491.59 -2.94 -19.35 16 5 C 0.08 2.19 4.85 86.30 0.42 2.61 16 6 C 0.02 0.71 2.35 -12.60 -0.03 0.68 16 7 H 0.12 3.77 8.14 -2.39 -0.02 3.75 16 8 C 0.27 10.94 13.67 89.44 1.22 12.16 16 9 N -0.51 -23.20 18.54 20.01 0.37 -22.83 16 10 C 0.04 1.71 4.42 29.85 0.13 1.84 16 11 C -0.54 -28.57 8.60 25.60 0.22 -28.35 16 12 H 0.05 2.88 7.59 -2.91 -0.02 2.86 16 13 C 0.01 0.62 5.46 84.65 0.46 1.09 16 14 N -0.92 -53.25 13.29 21.44 0.28 -52.96 16 15 Si 0.95 43.48 29.54 68.60 2.03 45.50 16 16 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 17 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 18 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 19 C -0.12 -1.87 2.74 -9.80 -0.03 -1.90 16 20 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 21 C -0.14 -1.78 5.75 31.89 0.18 -1.60 16 22 C 0.04 0.55 7.72 72.66 0.56 1.11 16 23 O -0.40 -8.46 11.52 -148.98 -1.72 -10.18 16 24 C 0.04 0.77 6.60 72.36 0.48 1.24 16 25 H 0.04 0.95 7.45 -2.39 -0.02 0.93 16 26 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.07 1.13 7.31 -2.39 -0.02 1.12 16 28 H 0.35 7.28 6.77 -89.69 -0.61 6.68 16 29 H 0.07 2.07 7.43 -2.39 -0.02 2.05 16 30 H 0.06 1.63 8.06 -2.39 -0.02 1.61 16 31 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 32 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 34 H 0.08 1.03 7.75 -2.38 -0.02 1.01 16 35 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.08 1.47 6.84 -2.39 -0.02 1.46 16 Total: -1.00 -64.65 322.07 2.82 -61.83 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: 0.42 Total: 9.18 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: 4.37 Total: -11.19 kcal Atomic # 7 Polarization: -92.86 SS G_CDS: -2.28 Total: -95.15 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -1.72 Total: -10.18 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -64.65 2.82 -61.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309451663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.654 kcal (2) G-P(sol) polarization free energy of solvation -64.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds