Wall clock time and date at job start Sun Mar 29 2020 23:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.90451 * 2 1 4 4 C 1.54007 * 109.91023 * 238.70930 * 2 1 3 5 5 H 1.08998 * 110.32947 * 0.83795 * 4 2 1 6 6 N 1.46898 * 110.32543 * 122.95091 * 4 2 1 7 7 C 1.48530 * 111.00297 * 176.65410 * 6 4 2 8 8 C 1.54936 * 103.23296 * 159.72193 * 7 6 4 9 9 C 1.54599 * 102.91862 * 322.58474 * 8 7 6 10 10 C 1.47905 * 111.00073 * 294.04936 * 6 4 2 11 11 C 1.54619 * 105.04426 * 241.94446 * 4 2 1 12 12 C 1.54591 * 102.91029 * 21.70058 * 11 4 2 13 13 N 1.47484 * 109.91503 * 121.09453 * 2 1 3 14 14 C 1.34771 * 127.03611 * 273.87675 * 13 2 1 15 15 O 1.21693 * 119.99825 * 359.97438 * 14 13 2 16 16 C 1.46374 * 120.00327 * 179.97438 * 14 13 2 17 17 H 1.08005 * 119.99861 * 6.00838 * 16 14 13 18 18 C 1.40051 * 120.00262 * 186.00189 * 16 14 13 19 19 N 1.30670 * 119.99951 * 353.82307 * 18 16 14 20 20 Si 1.86801 * 120.00082 * 173.81809 * 18 16 14 21 21 H 1.48500 * 109.47048 * 275.01477 * 20 18 16 22 22 H 1.48495 * 109.46882 * 35.01354 * 20 18 16 23 23 H 1.48500 * 109.46810 * 155.01392 * 20 18 16 24 24 H 1.09002 * 109.46581 * 300.35710 * 1 2 3 25 25 H 1.08992 * 109.47267 * 60.35804 * 1 2 3 26 26 H 1.08996 * 109.46802 * 180.36094 * 1 2 3 27 27 H 1.09009 * 110.66484 * 278.15654 * 7 6 4 28 28 H 1.08998 * 110.66951 * 41.28094 * 7 6 4 29 29 H 1.08993 * 110.72615 * 204.22795 * 8 7 6 30 30 H 1.09000 * 110.72560 * 80.93935 * 8 7 6 31 31 H 1.08998 * 110.30738 * 263.04466 * 9 8 7 32 32 H 1.08997 * 110.31106 * 140.86882 * 9 8 7 33 33 H 1.09001 * 109.91285 * 333.50634 * 10 6 4 34 34 H 1.08996 * 109.92015 * 94.60440 * 10 6 4 35 35 H 1.09000 * 110.73851 * 140.18924 * 11 4 2 36 36 H 1.09007 * 110.73708 * 263.32854 * 11 4 2 37 37 H 1.09004 * 110.61649 * 204.35492 * 12 11 4 38 38 H 1.09003 * 110.54832 * 81.35206 * 12 11 4 39 39 H 0.97001 * 120.00460 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0248 0.0000 4 6 2.0545 -0.7521 -1.2374 5 1 1.2226 -1.1050 -1.8468 6 7 2.9327 0.1191 -2.0297 7 6 3.5110 -0.6158 -3.1837 8 6 3.9362 0.5187 -4.1495 9 6 2.8046 1.5584 -3.9809 10 6 2.1750 1.2490 -2.6100 11 6 2.8515 -1.9499 -0.6711 12 6 2.2675 -2.1119 0.7511 13 7 2.0324 -0.7161 1.1874 14 6 2.2405 -0.2040 2.4165 15 8 2.0080 0.9707 2.6335 16 6 2.7462 -1.0605 3.4904 17 1 3.0443 -2.0762 3.2759 18 6 2.8436 -0.5629 4.7959 19 7 2.5988 0.6983 5.0344 20 14 3.3235 -1.7023 6.1963 21 1 2.1144 -2.3991 6.7039 22 1 4.3030 -2.7046 5.7054 23 1 3.9345 -0.9087 7.2927 24 1 -0.3632 0.5194 0.8868 25 1 -0.3633 0.5082 -0.8931 26 1 -0.3633 -1.0276 0.0065 27 1 4.3766 -1.2008 -2.8725 28 1 2.7602 -1.2551 -3.6480 29 1 3.9769 0.1559 -5.1765 30 1 4.8955 0.9408 -3.8501 31 1 2.0638 1.4428 -4.7721 32 1 3.2143 2.5684 -3.9897 33 1 1.1293 0.9688 -2.7363 34 1 2.2499 2.1198 -1.9587 35 1 2.6765 -2.8460 -1.2664 36 1 3.9159 -1.7191 -0.6272 37 1 2.9855 -2.6041 1.4071 38 1 1.3304 -2.6679 0.7188 39 1 2.6659 1.0429 5.9386 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335798310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:08 Heat of formation + Delta-G solvation = -29.671618 kcal Electronic energy + Delta-G solvation = -19441.323509 eV Core-core repulsion = 16576.589453 eV Total energy + Delta-G solvation = -2864.734057 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.59293 -37.62233 -35.50205 -32.47078 -31.73810 -30.75513 -28.86704 -28.54642 -26.05515 -24.77919 -22.15953 -21.49714 -20.62641 -19.94911 -18.45558 -16.71809 -16.28810 -15.75124 -15.35774 -14.73364 -14.23168 -13.84003 -13.44769 -13.17611 -13.00369 -12.70691 -12.34471 -12.28208 -12.00716 -11.73477 -11.52637 -11.31831 -11.18724 -11.11108 -10.90032 -10.77148 -10.70679 -10.58000 -10.51868 -10.18379 -10.02546 -10.00329 -8.80672 -8.22090 -7.56019 -7.16638 -6.16166 -4.58947 3.16955 3.23005 3.25977 4.03347 4.14610 4.58004 4.63147 4.67346 4.69020 4.94265 5.13003 5.23458 5.29212 5.48154 5.52062 5.65758 5.75661 5.77115 5.79687 5.83623 5.93906 5.96375 6.00325 6.02738 6.11978 6.19368 6.26065 6.27896 6.44443 6.63092 6.69487 6.81243 7.06196 7.32713 7.46092 7.48573 8.16965 8.48881 9.06397 9.59139 10.63029 10.82474 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.035296 B = 0.005444 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.097670 B = 5142.449381 C = 5314.626821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.145 3.855 3 H 0.078 0.922 4 C 0.069 3.931 5 H 0.048 0.952 6 N -0.506 5.506 7 C 0.036 3.964 8 C -0.123 4.123 9 C -0.130 4.130 10 C 0.034 3.966 11 C -0.127 4.127 12 C 0.116 3.884 13 N -0.635 5.635 14 C 0.578 3.422 15 O -0.575 6.575 16 C -0.540 4.540 17 H 0.069 0.931 18 C 0.088 3.912 19 N -0.769 5.769 20 Si 0.907 3.093 21 H -0.271 1.271 22 H -0.265 1.265 23 H -0.280 1.280 24 H 0.062 0.938 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.081 0.919 28 H 0.040 0.960 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.043 0.957 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.047 0.953 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.094 -4.461 -15.623 16.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.039 3.961 3 H 0.096 0.904 4 C -0.041 4.041 5 H 0.065 0.935 6 N -0.231 5.231 7 C -0.092 4.092 8 C -0.161 4.161 9 C -0.168 4.168 10 C -0.094 4.094 11 C -0.166 4.166 12 C -0.009 4.009 13 N -0.374 5.374 14 C 0.384 3.616 15 O -0.458 6.458 16 C -0.577 4.577 17 H 0.087 0.913 18 C -0.132 4.132 19 N -0.397 5.397 20 Si 0.732 3.268 21 H -0.197 1.197 22 H -0.190 1.190 23 H -0.205 1.205 24 H 0.081 0.919 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.099 0.901 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.065 0.935 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.185 -3.403 -14.867 15.253 hybrid contribution -0.528 -0.961 0.098 1.101 sum -0.344 -4.364 -14.769 15.404 Atomic orbital electron populations 1.22158 0.96841 1.01098 1.01236 1.21104 0.92249 0.97580 0.85136 0.90356 1.22839 0.93496 0.93255 0.94492 0.93455 1.64845 1.31305 1.08164 1.18747 1.23193 0.99270 0.95943 0.90794 1.22472 0.99112 0.95896 0.98657 1.22395 0.97861 0.99874 0.96700 1.22864 0.95860 0.95721 0.94911 1.22753 1.00959 0.95923 0.96985 1.22014 0.98796 0.86743 0.93353 1.49034 1.70562 1.08423 1.09411 1.17985 0.77563 0.87349 0.78661 1.90607 1.57082 1.17589 1.80478 1.20852 1.45752 0.99170 0.91903 0.91281 1.25709 0.93153 0.94815 0.99495 1.70026 1.35577 1.13199 1.20947 0.86397 0.79240 0.80619 0.80558 1.19683 1.18959 1.20523 0.91939 0.93518 0.93228 0.90087 0.94144 0.91424 0.90761 0.91845 0.91121 0.93869 0.90167 0.91726 0.90228 0.90293 0.93527 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.30 37.16 0.35 -2.46 16 2 C 0.15 2.93 2.73 -66.87 -0.18 2.74 16 3 H 0.08 1.80 7.15 -51.93 -0.37 1.43 16 4 C 0.07 1.10 2.04 -66.34 -0.14 0.96 16 5 H 0.05 0.69 7.56 -51.93 -0.39 0.30 16 6 N -0.51 -7.65 5.01 -220.86 -1.11 -8.75 16 7 C 0.04 0.43 5.83 -1.90 -0.01 0.42 16 8 C -0.12 -1.26 7.06 -24.87 -0.18 -1.44 16 9 C -0.13 -1.37 6.93 -25.37 -0.18 -1.55 16 10 C 0.03 0.46 5.84 -2.75 -0.02 0.44 16 11 C -0.13 -1.98 5.90 -25.04 -0.15 -2.13 16 12 C 0.12 2.18 6.88 -2.32 -0.02 2.17 16 13 N -0.64 -15.05 2.92 -164.14 -0.48 -15.53 16 14 C 0.58 17.03 7.82 -12.99 -0.10 16.93 16 15 O -0.58 -19.24 15.38 5.20 0.08 -19.16 16 16 C -0.54 -15.56 9.05 -35.63 -0.32 -15.88 16 17 H 0.07 1.83 6.42 -52.48 -0.34 1.49 16 18 C 0.09 2.49 5.49 -17.37 -0.10 2.39 16 19 N -0.77 -23.44 11.85 55.55 0.66 -22.78 16 20 Si 0.91 20.41 29.56 -169.99 -5.03 15.38 16 21 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.08 0.95 7.91 -51.92 -0.41 0.54 16 28 H 0.04 0.45 8.02 -51.93 -0.42 0.03 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.04 0.56 7.69 -51.93 -0.40 0.16 16 34 H 0.08 1.18 7.88 -51.93 -0.41 0.77 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 1.32 7.88 -51.93 -0.41 0.91 16 37 H 0.08 1.52 6.61 -51.93 -0.34 1.18 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16 LS Contribution 309.61 15.07 4.67 4.67 Total: -1.00 -34.39 309.61 -8.67 -43.06 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -6.43 Total: 0.50 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -1.03 Total: 2.60 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: -0.93 Total: -47.06 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: 0.08 Total: -19.16 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.39 -8.67 -43.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335798310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.390 kcal (2) G-P(sol) polarization free energy of solvation -34.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds