Wall clock time and date at job start Sun Mar 29 2020 22:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.70625 * 2 1 4 4 C 1.53188 * 109.58376 * 120.35611 * 2 1 3 5 5 C 1.53046 * 109.31068 * 174.42034 * 4 2 1 6 6 H 1.09003 * 109.45647 * 178.62388 * 5 4 2 7 7 N 1.46502 * 109.46060 * 58.65456 * 5 4 2 8 8 C 1.36936 * 119.99908 * 154.99738 * 7 5 4 9 9 H 1.07996 * 120.00288 * 359.97438 * 8 7 5 10 10 C 1.38809 * 119.99667 * 180.02562 * 8 7 5 11 11 N 1.31623 * 119.99630 * 180.02562 * 10 8 7 12 12 Si 1.86793 * 120.00237 * 359.97438 * 10 8 7 13 13 H 1.48507 * 109.47084 * 90.00113 * 12 10 8 14 14 H 1.48502 * 109.47510 * 209.99760 * 12 10 8 15 15 H 1.48494 * 109.47296 * 330.00316 * 12 10 8 16 16 C 1.53038 * 109.53940 * 298.62971 * 5 4 2 17 17 C 1.52768 * 109.38042 * 61.24407 * 16 5 4 18 18 N 1.46930 * 109.58513 * 239.64363 * 2 1 3 19 19 C 1.34775 * 120.63338 * 6.58321 * 18 2 1 20 20 O 1.21280 * 120.00072 * 355.02987 * 19 18 2 21 21 C 1.50694 * 120.00092 * 175.03329 * 19 18 2 22 22 C 1.53003 * 117.49941 * 248.62204 * 21 19 18 23 23 C 1.52999 * 117.50101 * 179.97438 * 21 19 18 24 24 H 1.09001 * 109.47418 * 176.01267 * 1 2 3 25 25 H 1.08996 * 109.47352 * 296.02037 * 1 2 3 26 26 H 1.09006 * 109.46974 * 56.01773 * 1 2 3 27 27 H 1.09000 * 109.50033 * 294.37064 * 4 2 1 28 28 H 1.09005 * 109.49970 * 54.47208 * 4 2 1 29 29 H 0.96998 * 119.99895 * 335.00614 * 7 5 4 30 30 H 0.97008 * 119.99668 * 179.97438 * 11 10 8 31 31 H 1.08998 * 109.49693 * 181.31384 * 16 5 4 32 32 H 1.08994 * 109.50111 * 301.41832 * 16 5 4 33 33 H 1.08996 * 109.51136 * 185.70679 * 17 16 5 34 34 H 1.08994 * 109.43260 * 65.42228 * 17 16 5 35 35 H 1.09001 * 115.55229 * 34.33005 * 21 19 18 36 36 H 1.08996 * 117.49483 * 359.97438 * 22 21 19 37 37 H 1.08994 * 117.49816 * 145.01950 * 22 21 19 38 38 H 1.09002 * 117.50464 * 214.98059 * 23 21 19 39 39 H 1.09001 * 117.49618 * 0.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7294 1.2454 5 6 3.5675 -0.8480 1.1701 6 1 3.9377 -1.3451 2.0668 7 7 4.1571 0.4897 1.0749 8 6 5.4414 0.7036 1.4990 9 1 6.0196 -0.1137 1.9040 10 6 5.9998 1.9713 1.4092 11 7 7.2345 2.1768 1.8164 12 14 4.9996 3.3851 0.7094 13 1 4.2605 4.0595 1.8068 14 1 5.9097 4.3588 0.0543 15 1 4.0335 2.8613 -0.2892 16 6 3.9569 -1.6659 -0.0634 17 6 3.4645 -0.9520 -1.3211 18 7 2.0225 -0.6996 -1.1945 19 6 1.1674 -1.1070 -2.1532 20 8 -0.0280 -0.9784 -1.9941 21 6 1.6965 -1.7224 -3.4229 22 6 1.5341 -0.9223 -4.7169 23 6 0.6751 -2.1652 -4.4725 24 1 -0.3634 -1.0252 -0.0715 25 1 -0.3634 0.4508 0.9234 26 1 -0.3633 0.5744 -0.8522 27 1 1.7660 -0.1668 2.1368 28 1 1.6029 -1.7254 1.2913 29 1 3.6376 1.2239 0.7116 30 1 7.6249 3.0626 1.7533 31 1 5.0412 -1.7697 -0.1036 32 1 3.4982 -2.6529 -0.0052 33 1 3.6503 -1.5799 -2.1924 34 1 3.9929 -0.0051 -1.4310 35 1 2.5983 -2.3248 -3.3131 36 1 1.0441 0.0490 -4.6498 37 1 2.3291 -0.9981 -5.4586 38 1 0.9052 -3.0583 -5.0535 39 1 -0.3796 -2.0110 -4.2447 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044403021.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:10 Heat of formation + Delta-G solvation = 19.078464 kcal Electronic energy + Delta-G solvation = -19695.429696 eV Core-core repulsion = 16832.809601 eV Total energy + Delta-G solvation = -2862.620094 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.51136 -37.98054 -36.16039 -34.30884 -32.50610 -31.95982 -29.69566 -27.23360 -24.90542 -23.94082 -23.08776 -22.54082 -21.49081 -19.65055 -18.32952 -17.77714 -16.96956 -15.90085 -15.52783 -14.82432 -14.64121 -14.25912 -14.06941 -13.66724 -13.37346 -13.24126 -12.53620 -12.39612 -12.27011 -12.12079 -11.70808 -11.64622 -11.35832 -11.03136 -10.94589 -10.79725 -10.66178 -10.50786 -10.43177 -10.26395 -10.01396 -9.61186 -9.00006 -8.87379 -8.25602 -7.31825 -5.81527 -3.17116 2.60680 3.11985 3.32507 3.36042 3.41955 3.80983 4.52215 4.54376 4.68406 4.80985 4.95544 5.13827 5.19893 5.21787 5.33563 5.47248 5.51065 5.56184 5.63149 5.65350 5.74180 5.84424 5.89437 6.00643 6.01557 6.04982 6.17493 6.32963 6.38723 6.48324 6.61452 6.64770 6.70328 6.96603 7.66778 7.94882 8.37470 8.37952 9.15779 9.88511 10.08323 11.36824 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.025666 B = 0.006641 C = 0.006400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.664781 B = 4214.965604 C = 4373.936108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.143 3.857 3 H 0.070 0.930 4 C -0.137 4.137 5 C 0.179 3.821 6 H 0.060 0.940 7 N -0.746 5.746 8 C -0.243 4.243 9 H 0.091 0.909 10 C 0.007 3.993 11 N -0.933 5.933 12 Si 0.880 3.120 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.279 1.279 16 C -0.150 4.150 17 C 0.113 3.887 18 N -0.596 5.596 19 C 0.542 3.458 20 O -0.545 6.545 21 C -0.195 4.195 22 C -0.153 4.153 23 C -0.150 4.150 24 H 0.070 0.930 25 H 0.040 0.960 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.360 0.640 30 H 0.259 0.741 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.295 -8.211 -9.797 17.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.040 3.960 3 H 0.088 0.912 4 C -0.176 4.176 5 C 0.069 3.931 6 H 0.078 0.922 7 N -0.390 5.390 8 C -0.372 4.372 9 H 0.109 0.891 10 C -0.189 4.189 11 N -0.581 5.581 12 Si 0.710 3.290 13 H -0.210 1.210 14 H -0.217 1.217 15 H -0.205 1.205 16 C -0.191 4.191 17 C -0.009 4.009 18 N -0.328 5.328 19 C 0.330 3.670 20 O -0.425 6.425 21 C -0.216 4.216 22 C -0.190 4.190 23 C -0.187 4.187 24 H 0.089 0.911 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.194 0.806 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.142 0.858 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.665 -8.142 -9.583 17.152 hybrid contribution -0.228 1.123 -0.437 1.226 sum -11.893 -7.019 -10.019 17.062 Atomic orbital electron populations 1.22201 0.92951 1.03492 1.00350 1.21265 0.95108 0.95443 0.84142 0.91181 1.22293 0.97360 1.00702 0.97227 1.20166 0.90184 0.87108 0.95607 0.92175 1.42874 1.14295 1.05292 1.76556 1.19070 0.88213 0.95926 1.34037 0.89129 1.24643 0.96045 0.97071 1.01161 1.69698 1.13441 1.22007 1.52926 0.86639 0.79650 0.83591 0.79104 1.21042 1.21719 1.20496 1.22422 1.01886 0.98063 0.96726 1.21686 0.79090 1.01586 0.98584 1.48108 1.07942 1.56744 1.20035 1.19585 0.85961 0.77734 0.83696 1.90712 1.15664 1.56681 1.79398 1.22331 1.03141 1.06189 0.89975 1.22899 1.02954 0.96776 0.96375 1.22924 0.97677 0.98313 0.99825 0.91147 0.94076 0.91492 0.90618 0.91559 0.80625 0.93054 0.90230 0.92945 0.90640 0.90326 0.85849 0.88429 0.87940 0.88214 0.87595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 7.59 37.16 0.28 -1.76 16 2 C 0.14 2.32 3.20 -67.60 -0.22 2.11 16 3 H 0.07 1.25 6.64 -51.93 -0.34 0.91 16 4 C -0.14 -2.16 5.07 -26.61 -0.13 -2.29 16 5 C 0.18 3.24 3.10 -67.89 -0.21 3.03 16 6 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 7 N -0.75 -16.58 4.12 -53.38 -0.22 -16.80 16 8 C -0.24 -6.50 10.41 -15.06 -0.16 -6.66 16 9 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 10 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 11 N -0.93 -28.60 13.97 55.49 0.78 -27.83 16 12 Si 0.88 21.69 27.73 -169.99 -4.71 16.98 16 13 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 14 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 15 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 16 C -0.15 -2.38 5.76 -26.83 -0.15 -2.54 16 17 C 0.11 1.71 6.05 -3.93 -0.02 1.69 16 18 N -0.60 -9.28 2.98 -165.48 -0.49 -9.77 16 19 C 0.54 8.22 7.39 -10.99 -0.08 8.14 16 20 O -0.55 -9.36 11.66 5.56 0.06 -9.30 16 21 C -0.20 -2.31 5.26 -91.77 -0.48 -2.79 16 22 C -0.15 -1.56 10.24 -26.70 -0.27 -1.83 16 23 C -0.15 -1.52 10.05 -26.71 -0.27 -1.79 16 24 H 0.07 1.13 6.73 -51.93 -0.35 0.78 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.07 1.10 6.76 -51.93 -0.35 0.75 16 27 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.36 8.04 3.92 -40.82 -0.16 7.88 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.94 5.48 -51.93 -0.28 0.65 16 34 H 0.08 1.38 7.74 -51.93 -0.40 0.98 16 35 H 0.12 1.28 6.38 -51.93 -0.33 0.94 16 36 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.11 1.21 7.67 -51.93 -0.40 0.81 16 LS Contribution 301.71 15.07 4.55 4.55 Total: -1.00 -30.52 301.71 -7.87 -38.39 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -6.01 Total: 8.39 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -1.82 Total: -4.61 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: 0.06 Total: -54.40 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.06 Total: -9.30 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.71 Total: 16.98 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.52 -7.87 -38.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044403021.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.470 kcal (2) G-P(sol) polarization free energy of solvation -30.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds