Wall clock time and date at job start Sun Mar 29 2020 23:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.52999 * 109.47284 * 240.00442 * 2 1 3 5 5 C 1.52999 * 109.47283 * 175.00170 * 4 2 1 6 6 N 1.46502 * 109.47096 * 179.97438 * 5 4 2 7 7 C 1.36931 * 119.99881 * 179.97438 * 6 5 4 8 8 H 1.07995 * 120.00139 * 359.97438 * 7 6 5 9 9 C 1.38817 * 119.99834 * 180.02562 * 7 6 5 10 10 N 1.31618 * 119.99679 * 179.97438 * 9 7 6 11 11 Si 1.86792 * 120.00100 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47402 * 89.99744 * 11 9 7 13 13 H 1.48501 * 109.47400 * 209.99769 * 11 9 7 14 14 H 1.48500 * 109.47095 * 329.99722 * 11 9 7 15 15 N 1.46499 * 109.47288 * 119.99801 * 2 1 3 16 16 C 1.34777 * 120.00199 * 275.00460 * 15 2 1 17 17 O 1.21283 * 119.99750 * 359.97438 * 16 15 2 18 18 C 1.50702 * 119.99928 * 180.27479 * 16 15 2 19 19 H 1.09002 * 115.54506 * 325.30478 * 18 16 15 20 20 C 1.53000 * 117.49989 * 110.97543 * 18 16 15 21 21 C 1.52990 * 117.49747 * 179.63344 * 18 16 15 22 22 C 1.52993 * 138.58619 * 121.61703 * 21 18 16 23 23 C 1.52994 * 138.59031 * 23.40869 * 21 18 16 24 24 H 1.09007 * 109.47320 * 60.00143 * 1 2 3 25 25 H 1.08993 * 109.47268 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47495 * 300.00247 * 1 2 3 27 27 H 1.09006 * 109.46798 * 294.99777 * 4 2 1 28 28 H 1.08995 * 109.47322 * 54.99237 * 4 2 1 29 29 H 1.08997 * 109.47141 * 299.99510 * 5 4 2 30 30 H 1.08998 * 109.47192 * 59.99829 * 5 4 2 31 31 H 0.97003 * 120.00134 * 0.02562 * 6 5 4 32 32 H 0.97000 * 119.99816 * 180.02562 * 10 9 7 33 33 H 0.97000 * 119.99484 * 94.99557 * 15 2 1 34 34 H 1.08996 * 117.49636 * 214.97916 * 20 18 16 35 35 H 1.08999 * 117.49752 * 0.02562 * 20 18 16 36 36 H 1.09001 * 117.49815 * 336.59682 * 22 21 18 37 37 H 1.09004 * 117.49992 * 121.61981 * 22 21 18 38 38 H 1.09001 * 117.49425 * 238.38392 * 23 21 18 39 39 H 1.09008 * 117.50123 * 23.37127 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 7 4.0532 -1.3043 -2.5096 7 6 5.3952 -1.3403 -2.7795 8 1 6.0935 -0.8589 -2.1109 9 6 5.8579 -1.9946 -3.9129 10 7 7.1478 -2.0288 -4.1725 11 14 4.6499 -2.8254 -5.0703 12 1 4.2147 -1.8579 -6.1096 13 1 5.3066 -3.9879 -5.7203 14 1 3.4678 -3.2908 -4.3014 15 7 2.0183 -0.6906 1.1962 16 6 2.1470 -0.0182 2.3572 17 8 1.8589 1.1586 2.4115 18 6 2.6553 -0.7271 3.5861 19 1 2.3572 -1.7711 3.6835 20 6 4.0406 -0.3365 4.1048 21 6 2.7870 0.0930 4.8709 22 6 2.2552 0.0716 6.3053 23 6 2.1971 1.3631 5.4870 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.7516 -1.7715 -1.2056 28 1 1.6053 -0.2617 -2.1369 29 1 3.8532 0.4370 -1.3573 30 1 3.9994 -1.0728 -0.4260 31 1 3.4259 -1.7357 -3.1107 32 1 7.4711 -2.4857 -4.9647 33 1 2.2490 -1.6317 1.1526 34 1 4.6538 -1.1233 4.5439 35 1 4.5842 0.4336 3.5574 36 1 1.3166 -0.4521 6.4863 37 1 2.9861 0.0196 7.1123 38 1 2.8899 2.1607 5.7555 39 1 1.2204 1.6893 5.1294 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732736498.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:31:42 Heat of formation + Delta-G solvation = 26.088952 kcal Electronic energy + Delta-G solvation = -18216.648185 eV Core-core repulsion = 15354.332088 eV Total energy + Delta-G solvation = -2862.316097 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.09153 -37.94078 -36.36256 -34.46984 -32.89060 -31.81992 -30.76232 -28.28212 -24.75224 -23.67056 -22.56108 -21.45065 -20.94196 -20.44099 -19.22721 -17.62290 -17.11329 -16.17459 -15.31314 -15.16934 -14.70982 -14.51950 -14.25421 -14.03184 -13.66927 -13.32844 -12.65424 -12.59352 -12.57322 -12.04878 -11.84088 -11.64962 -11.52200 -11.25186 -10.89629 -10.73956 -10.51641 -10.37364 -10.26563 -10.15731 -10.15188 -9.66378 -9.60079 -9.01793 -8.88377 -7.24309 -5.77523 -3.13290 2.51483 3.03530 3.35793 3.38688 3.44031 3.57559 3.69814 4.12810 4.58016 4.61634 4.64099 4.78712 4.96642 5.17350 5.26295 5.28761 5.40310 5.42619 5.47962 5.49505 5.56866 5.62457 5.64343 5.76155 5.79954 5.82705 5.92916 5.96397 5.99641 6.15512 6.22680 6.53312 6.71040 6.76454 7.58154 7.98948 8.30165 8.41463 9.20509 9.92740 10.12598 11.40985 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.029422 B = 0.004171 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.436690 B = 6711.786519 C = 7367.116933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.089 0.911 4 C -0.139 4.139 5 C 0.158 3.842 6 N -0.758 5.758 7 C -0.245 4.245 8 H 0.089 0.911 9 C 0.003 3.997 10 N -0.934 5.934 11 Si 0.886 3.114 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.278 1.278 15 N -0.717 5.717 16 C 0.542 3.458 17 O -0.538 6.538 18 C -0.142 4.142 19 H 0.123 0.877 20 C -0.098 4.098 21 C -0.202 4.202 22 C -0.132 4.132 23 C -0.113 4.113 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.026 0.974 30 H 0.027 0.973 31 H 0.360 0.640 32 H 0.259 0.741 33 H 0.402 0.598 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.352 1.771 17.689 22.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.041 3.959 3 H 0.107 0.893 4 C -0.177 4.177 5 C 0.031 3.969 6 N -0.403 5.403 7 C -0.375 4.375 8 H 0.107 0.893 9 C -0.192 4.192 10 N -0.583 5.583 11 Si 0.717 3.283 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.204 1.204 15 N -0.368 5.368 16 C 0.328 3.672 17 O -0.415 6.415 18 C -0.163 4.163 19 H 0.140 0.860 20 C -0.135 4.135 21 C -0.202 4.202 22 C -0.168 4.168 23 C -0.150 4.150 24 H 0.084 0.916 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.193 0.807 32 H 0.069 0.931 33 H 0.236 0.764 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.313 2.667 17.723 22.326 hybrid contribution -0.628 -1.265 -1.089 1.783 sum -13.941 1.402 16.634 21.749 Atomic orbital electron populations 1.22161 0.95498 1.01924 1.02312 1.20938 0.93506 0.97769 0.83686 0.89273 1.22113 0.98091 1.00798 0.96718 1.20612 0.90153 0.95981 0.90168 1.42721 1.05323 1.66099 1.26167 1.19067 0.82252 1.29333 1.06811 0.89287 1.24688 0.95626 1.00694 0.98238 1.69706 1.11741 1.48267 1.28536 0.86517 0.80840 0.79443 0.81518 1.21073 1.21721 1.20383 1.46057 1.67076 1.14286 1.09413 1.19640 0.77208 0.86745 0.83598 1.90677 1.50051 1.15814 1.84990 1.21980 1.02809 0.99588 0.91905 0.85965 1.22692 0.88586 1.02477 0.99789 1.21155 1.02584 1.03840 0.92634 1.22753 1.01919 1.01099 0.91064 1.22576 1.02065 0.90249 1.00129 0.91588 0.92600 0.92374 0.91429 0.90322 0.95579 0.95493 0.80722 0.93052 0.76363 0.87502 0.87841 0.88685 0.88399 0.88579 0.88307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.48 37.16 0.35 -1.46 16 2 C 0.15 1.91 2.57 -67.93 -0.17 1.73 16 3 H 0.09 1.34 7.58 -51.93 -0.39 0.94 16 4 C -0.14 -2.00 4.87 -26.73 -0.13 -2.13 16 5 C 0.16 3.03 6.15 -4.04 -0.02 3.00 16 6 N -0.76 -18.06 5.41 -59.91 -0.32 -18.38 16 7 C -0.24 -7.02 10.47 -15.06 -0.16 -7.18 16 8 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 9 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 10 N -0.93 -29.55 13.97 55.49 0.78 -28.78 16 11 Si 0.89 22.08 27.74 -169.99 -4.71 17.36 16 12 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 14 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 15 N -0.72 -8.83 4.53 -53.81 -0.24 -9.07 16 16 C 0.54 7.35 7.58 -10.98 -0.08 7.27 16 17 O -0.54 -9.07 15.91 5.55 0.09 -8.98 16 18 C -0.14 -1.55 6.19 -91.78 -0.57 -2.11 16 19 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 20 C -0.10 -1.02 10.24 -26.70 -0.27 -1.29 16 21 C -0.20 -2.16 5.06 -154.49 -0.78 -2.94 16 22 C -0.13 -1.11 10.53 -26.74 -0.28 -1.39 16 23 C -0.11 -1.16 10.16 -26.74 -0.27 -1.43 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.03 0.52 7.75 -51.93 -0.40 0.12 16 31 H 0.36 8.28 5.53 -40.82 -0.23 8.06 16 32 H 0.26 7.78 8.31 -40.82 -0.34 7.45 16 33 H 0.40 4.25 8.60 -40.82 -0.35 3.90 16 34 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.10 1.09 8.14 -51.92 -0.42 0.67 16 LS Contribution 328.75 15.07 4.95 4.95 Total: -1.00 -33.69 328.75 -8.41 -42.11 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -6.46 Total: 8.71 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -2.49 Total: -7.93 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.21 Total: -56.23 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.09 Total: -8.98 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.71 Total: 17.36 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.69 -8.41 -42.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732736498.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.196 kcal (2) G-P(sol) polarization free energy of solvation -33.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds