Wall clock time and date at job start Mon Mar 30 2020 00:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99794 * 2 1 4 4 H 1.48496 * 109.47327 * 270.00611 * 3 2 1 5 5 H 1.48500 * 109.47030 * 30.00763 * 3 2 1 6 6 H 1.48505 * 109.46988 * 149.99855 * 3 2 1 7 7 C 1.37875 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00191 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99867 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47399 * 179.97438 * 9 7 2 11 11 N 1.46897 * 109.47715 * 180.02562 * 10 9 7 12 12 C 1.46952 * 111.00427 * 170.00107 * 11 10 9 13 13 C 1.53051 * 109.36758 * 176.80990 * 12 11 10 14 14 N 1.46963 * 109.36204 * 58.39811 * 13 12 11 15 15 C 1.46897 * 110.99882 * 176.81371 * 14 13 12 16 16 C 1.54269 * 110.03046 * 298.14228 * 15 14 13 17 17 C 1.54889 * 104.19509 * 217.10462 * 16 15 14 18 18 C 1.54889 * 102.74675 * 37.94408 * 17 16 15 19 19 C 1.53872 * 110.03407 * 180.97492 * 15 14 13 20 20 C 1.46952 * 110.88258 * 300.68309 * 14 13 12 21 21 C 1.46954 * 110.99935 * 46.19624 * 11 10 9 22 22 H 0.97004 * 120.00666 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47059 * 59.99930 * 9 7 2 24 24 H 1.09004 * 109.47278 * 299.99988 * 9 7 2 25 25 H 1.09004 * 109.46810 * 59.99488 * 10 9 7 26 26 H 1.09004 * 109.46930 * 300.00243 * 10 9 7 27 27 H 1.09004 * 109.48555 * 56.84064 * 12 11 10 28 28 H 1.09003 * 109.48837 * 296.78041 * 12 11 10 29 29 H 1.09001 * 109.49111 * 178.36894 * 13 12 11 30 30 H 1.09004 * 109.48490 * 298.43612 * 13 12 11 31 31 H 1.09000 * 110.01845 * 59.58037 * 15 14 13 32 32 H 1.08997 * 110.48665 * 335.78119 * 16 15 14 33 33 H 1.09000 * 110.48698 * 98.42928 * 16 15 14 34 34 H 1.08998 * 110.75528 * 279.62749 * 17 16 15 35 35 H 1.09000 * 110.75839 * 156.25886 * 17 16 15 36 36 H 1.09005 * 110.48261 * 203.38032 * 18 17 16 37 37 H 1.08992 * 110.48875 * 80.73684 * 18 17 16 38 38 H 1.08999 * 110.03555 * 238.57184 * 19 15 14 39 39 H 1.09003 * 110.02991 * 359.95277 * 19 15 14 40 40 H 1.09006 * 109.48771 * 299.35738 * 20 14 13 41 41 H 1.08993 * 109.49243 * 179.28955 * 20 14 13 42 42 H 1.09001 * 109.49196 * 303.16149 * 21 11 10 43 43 H 1.09007 * 109.48405 * 63.22571 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 7 1.5109 -4.9343 -0.0024 12 6 2.4176 -6.0657 -0.2419 13 6 1.6293 -7.3748 -0.1559 14 7 0.5431 -7.3554 -1.1457 15 6 -0.1913 -8.6275 -1.1462 16 6 0.7529 -9.7826 -1.5387 17 6 -0.1313 -10.7212 -2.3968 18 6 -1.0008 -9.7267 -3.2054 19 6 -1.3064 -8.5920 -2.2059 20 6 -0.3636 -6.2239 -0.9062 21 6 0.4247 -4.9149 -0.9921 22 1 -0.4851 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.8727 -3.6046 0.8877 26 1 2.8713 -3.6038 -0.8923 27 1 3.2058 -6.0657 0.5111 28 1 2.8612 -5.9727 -1.2332 29 1 2.2940 -8.2138 -0.3618 30 1 1.2083 -7.4807 0.8440 31 1 -0.6186 -8.8122 -0.1606 32 1 1.5916 -9.4073 -2.1249 33 1 1.1099 -10.3024 -0.6496 34 1 -0.7542 -11.3518 -1.7624 35 1 0.4823 -11.3279 -3.0628 36 1 -1.9238 -10.2056 -3.5326 37 1 -0.4454 -9.3423 -4.0608 38 1 -2.2749 -8.7601 -1.7348 39 1 -1.3031 -7.6304 -2.7192 40 1 -0.8071 -6.3168 0.0852 41 1 -1.1517 -6.2239 -1.6590 42 1 -0.2400 -4.0759 -0.7862 43 1 0.8458 -4.8088 -1.9920 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048335083.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:42 Heat of formation + Delta-G solvation = -4.231495 kcal Electronic energy + Delta-G solvation = -19164.222207 eV Core-core repulsion = 16436.424412 eV Total energy + Delta-G solvation = -2727.797795 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.60219 -37.53364 -34.65981 -32.81431 -30.94549 -29.90530 -28.67099 -27.70261 -25.24974 -23.60513 -23.15589 -20.72292 -20.36966 -19.67729 -19.15626 -16.85490 -16.22476 -15.71183 -14.82061 -14.59043 -14.46109 -14.37480 -14.04416 -13.75311 -13.62661 -13.41744 -12.44284 -12.18849 -11.81289 -11.72409 -11.58553 -11.23034 -11.14216 -11.01932 -10.96021 -10.92443 -10.85750 -10.64350 -10.57480 -10.39378 -10.21808 -9.88312 -9.27940 -9.07671 -8.33462 -8.19721 -7.64646 -5.99440 -4.01571 3.32757 3.38867 3.42396 3.95776 4.41483 4.43988 4.54126 4.59896 4.83496 5.16932 5.25344 5.32653 5.36566 5.38808 5.40411 5.53284 5.56598 5.60537 5.66017 5.72315 5.77026 5.79753 5.86661 5.94814 5.98249 6.08048 6.12694 6.21772 6.24096 6.27893 6.42858 6.53304 6.55827 6.95421 7.21000 7.23450 7.55274 7.64370 7.81385 7.87460 8.06253 8.44287 9.05001 9.62075 11.11969 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.048876 B = 0.003862 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.737219 B = 7248.342185 C = 7602.179881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.021 3.979 10 C 0.063 3.937 11 N -0.542 5.542 12 C 0.056 3.944 13 C 0.060 3.940 14 N -0.533 5.533 15 C 0.080 3.920 16 C -0.117 4.117 17 C -0.124 4.124 18 C -0.120 4.120 19 C -0.123 4.123 20 C 0.055 3.945 21 C 0.055 3.945 22 H 0.260 0.740 23 H 0.020 0.980 24 H 0.024 0.976 25 H 0.061 0.939 26 H 0.020 0.980 27 H 0.072 0.928 28 H 0.035 0.965 29 H 0.073 0.927 30 H 0.038 0.962 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.038 0.962 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.889 -19.996 -3.820 20.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.064 4.064 11 N -0.267 5.267 12 C -0.072 4.072 13 C -0.068 4.068 14 N -0.259 5.259 15 C -0.029 4.029 16 C -0.155 4.155 17 C -0.161 4.161 18 C -0.158 4.158 19 C -0.160 4.160 20 C -0.073 4.073 21 C -0.073 4.073 22 H 0.070 0.930 23 H 0.038 0.962 24 H 0.042 0.958 25 H 0.080 0.920 26 H 0.038 0.962 27 H 0.091 0.909 28 H 0.053 0.947 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.057 0.943 41 H 0.096 0.904 42 H 0.114 0.886 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.039 -19.864 -3.804 20.251 hybrid contribution 0.469 1.003 0.063 1.109 sum -0.569 -18.861 -3.741 19.237 Atomic orbital electron populations 1.69962 1.06019 1.26592 1.50752 1.24991 0.94844 0.99195 0.95294 0.86587 0.79856 0.83452 0.78063 1.20703 1.21210 1.19876 1.21190 0.93019 0.91018 1.50757 0.92759 1.19231 0.94124 0.90531 0.97715 1.22305 0.97001 0.88123 0.98950 1.62281 1.11915 1.03737 1.48761 1.22106 0.94879 0.90554 0.99705 1.22131 0.93555 0.97623 0.93524 1.62353 1.11900 1.02253 1.49359 1.22274 0.93695 0.89550 0.97354 1.22439 0.98445 0.95053 0.99523 1.22462 0.98027 0.97330 0.98327 1.22300 0.99394 0.95935 0.98134 1.22287 0.97225 0.99907 0.96624 1.22278 0.94898 0.90282 0.99839 1.22230 0.94507 0.96739 0.93819 0.93000 0.96164 0.95781 0.92027 0.96191 0.90939 0.94673 0.90873 0.94406 0.94266 0.90423 0.92141 0.91794 0.91678 0.92027 0.91473 0.92039 0.90377 0.94336 0.90432 0.88647 0.94680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.94 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.56 4.24 -27.88 -0.12 0.44 16 10 C 0.06 1.37 5.22 -3.83 -0.02 1.35 16 11 N -0.54 -10.32 4.86 -234.47 -1.14 -11.45 16 12 C 0.06 0.89 5.58 -3.77 -0.02 0.87 16 13 C 0.06 0.82 5.42 -3.76 -0.02 0.80 16 14 N -0.53 -7.32 4.49 -225.15 -1.01 -8.33 16 15 C 0.08 0.91 2.67 -66.60 -0.18 0.73 16 16 C -0.12 -1.14 5.20 -25.07 -0.13 -1.27 16 17 C -0.12 -1.03 6.91 -24.74 -0.17 -1.20 16 18 C -0.12 -1.07 6.83 -25.07 -0.17 -1.24 16 19 C -0.12 -1.27 5.91 -25.61 -0.15 -1.42 16 20 C 0.05 0.83 5.30 -3.77 -0.02 0.81 16 21 C 0.06 1.01 4.92 -3.77 -0.02 0.99 16 22 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 23 H 0.02 0.55 6.26 -51.93 -0.33 0.23 16 24 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.02 0.44 8.08 -51.93 -0.42 0.02 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.86 6.94 -51.93 -0.36 0.50 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.83 7.85 -51.93 -0.41 0.42 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.90 6.18 -51.93 -0.32 0.57 16 40 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.08 1.06 6.06 -51.93 -0.31 0.75 16 42 H 0.10 1.94 5.99 -51.93 -0.31 1.63 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 323.66 15.07 4.88 4.88 Total: -1.00 -29.71 323.66 -10.91 -40.62 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -7.92 Total: -3.50 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -1.43 Total: -12.80 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: -1.41 Total: -45.99 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.71 -10.91 -40.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048335083.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.389 kcal (2) G-P(sol) polarization free energy of solvation -29.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds