Wall clock time and date at job start Mon Mar 30 2020 00:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99794 * 2 1 4 4 H 1.48496 * 109.47327 * 270.00611 * 3 2 1 5 5 H 1.48500 * 109.47030 * 30.00763 * 3 2 1 6 6 H 1.48505 * 109.46988 * 149.99855 * 3 2 1 7 7 C 1.37875 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00191 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99867 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47399 * 179.97438 * 9 7 2 11 11 N 1.46897 * 109.47715 * 180.02562 * 10 9 7 12 12 C 1.46952 * 111.00427 * 170.00107 * 11 10 9 13 13 C 1.53051 * 109.36758 * 176.80990 * 12 11 10 14 14 N 1.46963 * 109.36204 * 58.39811 * 13 12 11 15 15 C 1.46897 * 110.99882 * 176.81371 * 14 13 12 16 16 C 1.54269 * 110.03046 * 298.14228 * 15 14 13 17 17 C 1.54889 * 104.19509 * 217.10462 * 16 15 14 18 18 C 1.54889 * 102.74675 * 37.94408 * 17 16 15 19 19 C 1.53872 * 110.03407 * 180.97492 * 15 14 13 20 20 C 1.46952 * 110.88258 * 300.68309 * 14 13 12 21 21 C 1.46954 * 110.99935 * 46.19624 * 11 10 9 22 22 H 0.97004 * 120.00666 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47059 * 59.99930 * 9 7 2 24 24 H 1.09004 * 109.47278 * 299.99988 * 9 7 2 25 25 H 1.09004 * 109.46810 * 59.99488 * 10 9 7 26 26 H 1.09004 * 109.46930 * 300.00243 * 10 9 7 27 27 H 1.09004 * 109.48555 * 56.84064 * 12 11 10 28 28 H 1.09003 * 109.48837 * 296.78041 * 12 11 10 29 29 H 1.09001 * 109.49111 * 178.36894 * 13 12 11 30 30 H 1.09004 * 109.48490 * 298.43612 * 13 12 11 31 31 H 1.09000 * 110.01845 * 59.58037 * 15 14 13 32 32 H 1.08997 * 110.48665 * 335.78119 * 16 15 14 33 33 H 1.09000 * 110.48698 * 98.42928 * 16 15 14 34 34 H 1.08998 * 110.75528 * 279.62749 * 17 16 15 35 35 H 1.09000 * 110.75839 * 156.25886 * 17 16 15 36 36 H 1.09005 * 110.48261 * 203.38032 * 18 17 16 37 37 H 1.08992 * 110.48875 * 80.73684 * 18 17 16 38 38 H 1.08999 * 110.03555 * 238.57184 * 19 15 14 39 39 H 1.09003 * 110.02991 * 359.95277 * 19 15 14 40 40 H 1.09006 * 109.48771 * 299.35738 * 20 14 13 41 41 H 1.08993 * 109.49243 * 179.28955 * 20 14 13 42 42 H 1.09001 * 109.49196 * 303.16149 * 21 11 10 43 43 H 1.09007 * 109.48405 * 63.22571 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 7 1.5109 -4.9343 -0.0024 12 6 2.4176 -6.0657 -0.2419 13 6 1.6293 -7.3748 -0.1559 14 7 0.5431 -7.3554 -1.1457 15 6 -0.1913 -8.6275 -1.1462 16 6 0.7529 -9.7826 -1.5387 17 6 -0.1313 -10.7212 -2.3968 18 6 -1.0008 -9.7267 -3.2054 19 6 -1.3064 -8.5920 -2.2059 20 6 -0.3636 -6.2239 -0.9062 21 6 0.4247 -4.9149 -0.9921 22 1 -0.4851 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.8727 -3.6046 0.8877 26 1 2.8713 -3.6038 -0.8923 27 1 3.2058 -6.0657 0.5111 28 1 2.8612 -5.9727 -1.2332 29 1 2.2940 -8.2138 -0.3618 30 1 1.2083 -7.4807 0.8440 31 1 -0.6186 -8.8122 -0.1606 32 1 1.5916 -9.4073 -2.1249 33 1 1.1099 -10.3024 -0.6496 34 1 -0.7542 -11.3518 -1.7624 35 1 0.4823 -11.3279 -3.0628 36 1 -1.9238 -10.2056 -3.5326 37 1 -0.4454 -9.3423 -4.0608 38 1 -2.2749 -8.7601 -1.7348 39 1 -1.3031 -7.6304 -2.7192 40 1 -0.8071 -6.3168 0.0852 41 1 -1.1517 -6.2239 -1.6590 42 1 -0.2400 -4.0759 -0.7862 43 1 0.8458 -4.8088 -1.9920 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048335083.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:42 Heat of formation + Delta-G solvation = -23.143670 kcal Electronic energy + Delta-G solvation = -19165.042301 eV Core-core repulsion = 16436.424412 eV Total energy + Delta-G solvation = -2728.617889 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.73996 -38.71517 -36.08301 -34.75537 -32.27045 -31.59534 -29.50575 -29.00283 -26.76069 -25.25483 -24.51624 -22.21537 -21.27194 -20.89613 -20.36491 -18.67772 -17.63239 -16.62799 -16.54471 -16.05297 -15.88482 -15.62046 -15.49677 -15.15778 -14.82636 -14.25541 -14.15615 -13.89493 -13.30043 -13.12699 -12.85426 -12.74653 -12.48795 -12.37174 -12.27305 -11.98047 -11.95322 -11.83186 -11.72139 -11.66047 -11.46567 -11.35535 -11.21739 -11.09649 -10.55313 -9.35103 -9.17797 -8.21296 -6.32726 1.39631 1.41252 1.52442 2.39586 2.88480 3.05661 3.12028 3.63963 3.77838 3.92718 4.08664 4.13521 4.21205 4.33517 4.39761 4.47549 4.54718 4.57851 4.61662 4.63653 4.73109 4.77013 4.77516 4.89810 4.93603 4.99696 5.01948 5.04757 5.08616 5.11002 5.23893 5.27949 5.34394 5.42703 5.52862 5.62942 5.75956 6.01093 6.05782 6.21915 6.29926 6.33535 6.83319 7.36283 8.90697 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.048876 B = 0.003862 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.737219 B = 7248.342185 C = 7602.179881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.031 3.969 10 C 0.078 3.922 11 N -0.550 5.550 12 C 0.055 3.945 13 C 0.066 3.934 14 N -0.538 5.538 15 C 0.077 3.923 16 C -0.114 4.114 17 C -0.118 4.118 18 C -0.118 4.118 19 C -0.124 4.124 20 C 0.066 3.934 21 C 0.060 3.940 22 H 0.264 0.736 23 H 0.000 1.000 24 H -0.008 1.008 25 H 0.065 0.935 26 H 0.018 0.982 27 H 0.086 0.914 28 H 0.032 0.968 29 H 0.100 0.900 30 H 0.033 0.967 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.031 0.969 41 H 0.090 0.910 42 H 0.064 0.936 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.062 -21.372 -4.073 21.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.585 4.585 8 H 0.078 0.922 9 C -0.006 4.006 10 C -0.049 4.049 11 N -0.275 5.275 12 C -0.073 4.073 13 C -0.062 4.062 14 N -0.264 5.264 15 C -0.031 4.031 16 C -0.151 4.151 17 C -0.156 4.156 18 C -0.156 4.156 19 C -0.162 4.162 20 C -0.062 4.062 21 C -0.068 4.068 22 H 0.073 0.927 23 H 0.018 0.982 24 H 0.011 0.989 25 H 0.083 0.917 26 H 0.037 0.963 27 H 0.104 0.896 28 H 0.050 0.950 29 H 0.118 0.882 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.049 0.951 41 H 0.109 0.891 42 H 0.083 0.917 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -0.081 -21.268 -4.059 21.652 hybrid contribution 0.136 1.394 0.136 1.407 sum 0.055 -19.874 -3.923 20.258 Atomic orbital electron populations 1.70098 1.07781 1.27824 1.51340 1.25962 0.95786 1.03324 0.94555 0.85418 0.78660 0.78282 0.78503 1.19745 1.20633 1.18723 1.21616 0.93525 0.92274 1.51047 0.92242 1.19040 0.94265 0.92113 0.95172 1.21979 0.95780 0.88178 0.98948 1.62255 1.12494 1.03484 1.49264 1.22226 0.94948 0.90160 0.99921 1.22118 0.93702 0.97059 0.93351 1.62372 1.11910 1.02810 1.49295 1.22401 0.94305 0.88772 0.97625 1.22424 0.98003 0.94598 1.00117 1.22456 0.97849 0.97029 0.98254 1.22295 1.00138 0.95569 0.97580 1.22300 0.97313 0.99872 0.96692 1.22103 0.94840 0.89351 0.99886 1.22108 0.94095 0.97693 0.92949 0.92710 0.98171 0.98929 0.91707 0.96330 0.89587 0.95016 0.88222 0.94822 0.94514 0.91196 0.91080 0.90817 0.90528 0.90715 0.92053 0.91299 0.91826 0.95082 0.89149 0.91743 0.95704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 2 C 0.00 0.11 5.46 84.65 0.46 0.57 16 3 Si 0.97 44.82 29.54 68.60 2.03 46.84 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 7 C -0.55 -31.85 9.11 25.60 0.23 -31.62 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.72 4.24 29.85 0.13 1.84 16 10 C 0.08 3.50 5.22 86.30 0.45 3.95 16 11 N -0.55 -21.23 4.86 -895.72 -4.35 -25.58 16 12 C 0.06 1.70 5.58 86.31 0.48 2.18 16 13 C 0.07 1.68 5.42 86.31 0.47 2.15 16 14 N -0.54 -14.17 4.49 -866.24 -3.89 -18.07 16 15 C 0.08 1.62 2.67 45.64 0.12 1.74 16 16 C -0.11 -1.92 5.20 31.67 0.16 -1.76 16 17 C -0.12 -1.63 6.91 31.89 0.22 -1.41 16 18 C -0.12 -1.85 6.83 31.67 0.22 -1.63 16 19 C -0.12 -2.38 5.91 31.32 0.19 -2.20 16 20 C 0.07 2.01 5.30 86.31 0.46 2.47 16 21 C 0.06 2.27 4.92 86.31 0.43 2.70 16 22 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 23 H 0.00 0.00 6.26 -2.39 -0.01 -0.01 16 24 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 25 H 0.06 2.82 8.14 -2.38 -0.02 2.80 16 26 H 0.02 0.82 8.08 -2.39 -0.02 0.80 16 27 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 28 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.10 2.06 6.94 -2.39 -0.02 2.04 16 30 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 1.32 7.85 -2.39 -0.02 1.30 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 36 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.06 1.41 6.18 -2.39 -0.01 1.40 16 40 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.09 2.49 6.06 -2.39 -0.01 2.48 16 42 H 0.06 2.81 5.99 -2.39 -0.01 2.80 16 43 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 Total: -1.00 -64.44 323.66 -0.98 -65.41 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 0.94 Total: 9.46 kcal Atomic # 6 Polarization: -25.04 SS G_CDS: 4.01 Total: -21.02 kcal Atomic # 7 Polarization: -92.74 SS G_CDS: -7.96 Total: -100.70 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -64.44 -0.98 -65.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048335083.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.270 kcal (2) G-P(sol) polarization free energy of solvation -64.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds