Wall clock time and date at job start Sun Mar 29 2020 23:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86797 * 120.00032 * 2 1 4 4 H 1.48499 * 109.46788 * 239.99987 * 3 2 1 5 5 H 1.48505 * 109.47050 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47032 * 119.99824 * 3 2 1 7 7 C 1.37872 * 119.99519 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99564 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00810 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47495 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46955 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.47019 * 179.97438 * 11 10 9 13 13 C 1.46960 * 110.99745 * 169.99870 * 12 11 10 14 14 C 1.53055 * 109.35954 * 183.19068 * 13 12 11 15 15 N 1.46955 * 109.36527 * 301.59579 * 14 13 12 16 16 C 1.46900 * 111.00149 * 183.19176 * 15 14 13 17 17 C 1.53006 * 109.47349 * 170.00492 * 16 15 14 18 18 C 1.53000 * 117.49776 * 174.99953 * 17 16 15 19 19 C 1.52997 * 117.49537 * 243.62408 * 17 16 15 20 20 C 1.46960 * 110.88009 * 59.32640 * 15 14 13 21 21 C 1.46956 * 111.00315 * 293.80079 * 12 11 10 22 22 H 0.97004 * 119.99560 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.47002 * 59.99476 * 9 7 2 24 24 H 1.09006 * 109.46987 * 299.99948 * 9 7 2 25 25 H 1.08998 * 109.47135 * 60.00139 * 10 9 7 26 26 H 1.09004 * 109.46945 * 299.99586 * 10 9 7 27 27 H 1.09006 * 109.47166 * 59.99943 * 11 10 9 28 28 H 1.09006 * 109.47362 * 300.00084 * 11 10 9 29 29 H 1.09001 * 109.49070 * 63.22685 * 13 12 11 30 30 H 1.08993 * 109.49250 * 303.15138 * 13 12 11 31 31 H 1.09007 * 109.48747 * 181.63622 * 14 13 12 32 32 H 1.08997 * 109.51019 * 61.58114 * 14 13 12 33 33 H 1.08997 * 109.47197 * 50.00472 * 16 15 14 34 34 H 1.09003 * 109.47053 * 290.00030 * 16 15 14 35 35 H 1.09002 * 115.56020 * 29.30536 * 17 16 15 36 36 H 1.08990 * 117.49990 * 359.97438 * 18 17 16 37 37 H 1.09004 * 117.49237 * 214.97568 * 18 17 16 38 38 H 1.08999 * 117.49685 * 145.02116 * 19 17 16 39 39 H 1.08999 * 117.52022 * 359.97438 * 19 17 16 40 40 H 1.09001 * 109.49070 * 60.64083 * 20 15 14 41 41 H 1.08999 * 109.49110 * 180.70935 * 20 15 14 42 42 H 1.09003 * 109.48515 * 296.78277 * 21 12 11 43 43 H 1.08997 * 109.48571 * 56.82037 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4348 -6.1037 0.0006 13 6 1.7502 -7.3819 0.2394 14 6 2.7858 -8.5066 0.3104 15 7 3.5479 -8.5473 -0.9454 16 6 4.5025 -9.6639 -0.9460 17 6 5.0945 -9.8281 -2.3473 18 6 6.2020 -10.8679 -2.5289 19 6 4.8032 -11.1344 -3.0886 20 6 4.2326 -7.2691 -1.1843 21 6 3.1970 -6.1443 -1.2552 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 2.8719 -3.6044 0.8905 26 1 2.8719 -3.6044 -0.8895 27 1 0.8533 -5.0451 -0.8886 28 1 0.8538 -5.0446 0.8914 29 1 1.0541 -7.5795 -0.5757 30 1 1.2034 -7.3312 1.1809 31 1 2.2780 -9.4597 0.4586 32 1 3.4655 -8.3236 1.1426 33 1 3.9887 -10.5813 -0.6589 34 1 5.3029 -9.4580 -0.2353 35 1 5.1581 -8.9160 -2.9408 36 1 6.5092 -11.4347 -1.6501 37 1 6.9944 -10.6399 -3.2420 38 1 4.6753 -11.0817 -4.1698 39 1 4.1902 -11.8772 -2.5782 40 1 4.9287 -7.0715 -0.3691 41 1 4.7795 -7.3198 -2.1257 42 1 2.5172 -6.3277 -2.0874 43 1 3.7045 -5.1912 -1.4036 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049579448.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:59:28 Heat of formation + Delta-G solvation = 21.308773 kcal Electronic energy + Delta-G solvation = -18519.974767 eV Core-core repulsion = 15793.284481 eV Total energy + Delta-G solvation = -2726.690286 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.45688 -37.61166 -35.43871 -33.42862 -31.41803 -30.82560 -28.49102 -26.09392 -24.14893 -23.72979 -22.61617 -22.12291 -20.46761 -19.90330 -19.61038 -16.73528 -16.18754 -15.48528 -15.29060 -14.95144 -14.72851 -14.43292 -14.24629 -13.99143 -13.71127 -13.33752 -12.58493 -12.23563 -12.16658 -11.85376 -11.77855 -11.56856 -11.24819 -11.20320 -10.95363 -10.81419 -10.73511 -10.54792 -10.43970 -10.35124 -10.17508 -9.55778 -9.28674 -9.02899 -8.42355 -8.30718 -8.00885 -5.96313 -3.98309 3.35886 3.39835 3.42653 3.45925 3.84533 4.16893 4.46433 4.49843 4.67487 4.76297 4.94888 5.08156 5.15381 5.19651 5.34739 5.37433 5.39308 5.41624 5.51407 5.51868 5.58853 5.64023 5.76202 5.81179 5.85252 5.95186 6.01414 6.02722 6.09472 6.17384 6.36508 6.74430 6.78675 6.95570 6.97457 7.16728 7.40739 7.45182 7.72190 7.87859 8.04438 8.47827 9.08757 9.65418 11.15167 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.041427 B = 0.003297 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.730728 B = 8491.153271 C = 8914.088084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.104 4.104 11 C 0.057 3.943 12 N -0.541 5.541 13 C 0.056 3.944 14 C 0.060 3.940 15 N -0.538 5.538 16 C 0.087 3.913 17 C -0.146 4.146 18 C -0.184 4.184 19 C -0.175 4.175 20 C 0.057 3.943 21 C 0.055 3.945 22 H 0.260 0.740 23 H 0.013 0.987 24 H 0.015 0.985 25 H 0.054 0.946 26 H 0.046 0.954 27 H 0.029 0.971 28 H 0.069 0.931 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.041 0.959 33 H 0.073 0.927 34 H 0.037 0.963 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.041 0.959 41 H 0.077 0.923 42 H 0.038 0.962 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.532 -21.693 -2.932 23.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.142 4.142 11 C -0.070 4.070 12 N -0.266 5.266 13 C -0.072 4.072 14 C -0.068 4.068 15 N -0.263 5.263 16 C -0.041 4.041 17 C -0.164 4.164 18 C -0.221 4.221 19 C -0.212 4.212 20 C -0.071 4.071 21 C -0.074 4.074 22 H 0.070 0.930 23 H 0.032 0.968 24 H 0.034 0.966 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.047 0.953 28 H 0.087 0.913 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.127 0.873 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.060 0.940 41 H 0.096 0.904 42 H 0.057 0.943 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.364 -21.572 -2.921 23.321 hybrid contribution 0.387 0.941 -0.045 1.018 sum 8.751 -20.632 -2.965 22.606 Atomic orbital electron populations 1.69964 1.06055 1.26633 1.51010 1.25030 0.94847 0.99230 0.95414 0.86658 0.79574 0.83158 0.78611 1.20271 1.21325 1.20237 1.21223 0.93004 0.91085 1.50372 0.92756 1.19068 0.94035 0.91381 0.97064 1.21646 0.99135 0.92754 1.00670 1.22278 0.93635 0.90866 1.00231 1.62235 1.27159 1.03017 1.34182 1.22122 0.95117 0.89021 1.00977 1.22140 0.96033 0.98485 0.90180 1.62119 1.26186 1.03335 1.34681 1.21633 0.93758 0.94426 0.94290 1.22304 1.02030 0.94282 0.97821 1.22973 0.92298 1.03492 1.03355 1.22981 0.98594 0.99425 1.00202 1.22225 0.95697 0.88282 1.00887 1.22186 0.95977 0.98397 0.90791 0.93003 0.96839 0.96637 0.92701 0.93504 0.95275 0.91259 0.94329 0.90438 0.90723 0.94067 0.90876 0.94480 0.87340 0.88962 0.88839 0.88966 0.88910 0.94031 0.90436 0.94337 0.89538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 8 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 10 C -0.10 -2.21 5.09 -26.73 -0.14 -2.35 16 11 C 0.06 1.03 4.96 -3.82 -0.02 1.01 16 12 N -0.54 -8.49 4.71 -234.46 -1.10 -9.59 16 13 C 0.06 0.75 5.61 -3.76 -0.02 0.72 16 14 C 0.06 0.69 5.61 -3.77 -0.02 0.66 16 15 N -0.54 -6.26 4.71 -234.46 -1.10 -7.37 16 16 C 0.09 0.83 5.24 -3.82 -0.02 0.81 16 17 C -0.15 -1.30 5.68 -90.62 -0.51 -1.82 16 18 C -0.18 -1.37 10.25 -26.73 -0.27 -1.64 16 19 C -0.18 -1.38 10.18 -26.73 -0.27 -1.65 16 20 C 0.06 0.70 5.44 -3.77 -0.02 0.68 16 21 C 0.05 0.80 5.41 -3.77 -0.02 0.78 16 22 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 23 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.05 0.98 6.49 -51.93 -0.34 0.64 16 27 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 28 H 0.07 1.24 8.03 -51.93 -0.42 0.82 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.96 8.07 -51.93 -0.42 0.55 16 31 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 32 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.65 7.76 -51.93 -0.40 0.24 16 34 H 0.04 0.36 8.12 -51.93 -0.42 -0.06 16 35 H 0.11 1.04 6.37 -51.93 -0.33 0.71 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 0.69 8.03 -51.93 -0.42 0.27 16 40 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.85 6.25 -51.93 -0.32 0.53 16 42 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.09 1.32 6.34 -51.93 -0.33 0.99 16 LS Contribution 335.69 15.07 5.06 5.06 Total: -1.00 -30.33 335.69 -11.31 -41.64 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -8.01 Total: -3.91 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -1.87 Total: -16.13 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: -1.47 Total: -43.63 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.33 -11.31 -41.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049579448.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.951 kcal (2) G-P(sol) polarization free energy of solvation -30.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds