Wall clock time and date at job start Mon Mar 30 2020 00:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00418 * 2 1 4 4 H 1.48499 * 109.47683 * 270.00334 * 3 2 1 5 5 H 1.48504 * 109.47142 * 30.00362 * 3 2 1 6 6 H 1.48503 * 109.47349 * 149.99900 * 3 2 1 7 7 C 1.38811 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00472 * 197.00198 * 7 2 1 9 9 N 1.36946 * 119.99824 * 16.99078 * 7 2 1 10 10 C 1.47083 * 120.88117 * 206.57971 * 9 7 2 11 11 C 1.53235 * 108.52310 * 231.21393 * 10 9 7 12 12 N 1.46905 * 109.33607 * 306.17074 * 11 10 9 13 13 C 1.46901 * 110.99802 * 187.25632 * 12 11 10 14 14 C 1.53000 * 109.47318 * 170.00141 * 13 12 11 15 15 C 1.52997 * 109.47107 * 174.99866 * 14 13 12 16 16 C 1.53001 * 109.46904 * 179.97438 * 15 14 13 17 17 C 1.52994 * 109.47329 * 300.00255 * 16 15 14 18 18 C 1.52997 * 109.47336 * 60.00009 * 17 16 15 19 19 C 1.53000 * 109.47107 * 299.99920 * 18 17 16 20 20 C 1.46897 * 111.26985 * 63.10881 * 12 11 10 21 21 C 1.47075 * 120.88170 * 26.61439 * 9 7 2 22 22 H 0.97000 * 119.99438 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.62759 * 111.49766 * 10 9 7 24 24 H 1.09002 * 109.62873 * 350.92165 * 10 9 7 25 25 H 1.09003 * 109.49174 * 186.21395 * 11 10 9 26 26 H 1.08996 * 109.51878 * 66.13966 * 11 10 9 27 27 H 1.09002 * 109.47220 * 49.99478 * 13 12 11 28 28 H 1.09009 * 109.47161 * 290.00260 * 13 12 11 29 29 H 1.08998 * 109.46992 * 54.99762 * 14 13 12 30 30 H 1.08997 * 109.47228 * 299.99453 * 15 14 13 31 31 H 1.08998 * 109.47280 * 60.00072 * 15 14 13 32 32 H 1.09007 * 109.46912 * 59.99926 * 16 15 14 33 33 H 1.08999 * 109.47041 * 180.02562 * 16 15 14 34 34 H 1.08998 * 109.47060 * 299.99723 * 17 16 15 35 35 H 1.09003 * 109.47052 * 179.97438 * 17 16 15 36 36 H 1.08997 * 109.47228 * 180.02562 * 18 17 16 37 37 H 1.08998 * 109.47280 * 59.99848 * 18 17 16 38 38 H 1.09007 * 109.47080 * 300.00301 * 19 18 17 39 39 H 1.08999 * 109.47244 * 179.97438 * 19 18 17 40 40 H 1.09001 * 109.49567 * 56.85023 * 20 12 11 41 41 H 1.08997 * 109.49517 * 176.93520 * 20 12 11 42 42 H 1.09007 * 109.62280 * 248.49988 * 21 9 7 43 43 H 1.09000 * 109.63104 * 9.06968 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0548 -1.2228 0.2729 9 7 1.3702 -2.3621 -0.3476 10 6 1.8308 -3.6611 0.1658 11 6 2.0028 -4.6191 -1.0177 12 7 0.7553 -4.6642 -1.7923 13 6 0.8194 -5.6984 -2.8336 14 6 -0.5679 -5.8879 -3.4503 15 6 -0.4771 -6.8730 -4.6173 16 6 -1.8646 -7.0630 -5.2335 17 6 -2.8218 -7.6137 -4.1747 18 6 -2.9127 -6.6285 -3.0076 19 6 -1.5253 -6.4386 -2.3913 20 6 0.4406 -3.3518 -2.3723 21 6 0.2046 -2.3419 -1.2443 22 1 -0.4849 0.8401 0.0004 23 1 1.0919 -4.0638 0.8586 24 1 2.7854 -3.5353 0.6768 25 1 2.2369 -5.6170 -0.6468 26 1 2.8142 -4.2683 -1.6552 27 1 1.1526 -6.6379 -2.3927 28 1 1.5224 -5.3911 -3.6081 29 1 -0.9387 -4.9290 -3.8122 30 1 0.2052 -6.4809 -5.3715 31 1 -0.1063 -7.8320 -4.2554 32 1 -2.2358 -6.1042 -5.5954 33 1 -1.7999 -7.7652 -6.0647 34 1 -2.4507 -8.5725 -3.8128 35 1 -3.8104 -7.7486 -4.6136 36 1 -3.5943 -7.0210 -2.2530 37 1 -3.2839 -5.6697 -3.3695 38 1 -1.1540 -7.3975 -2.0294 39 1 -1.5899 -5.7364 -1.5601 40 1 1.2738 -3.0182 -2.9908 41 1 -0.4582 -3.4306 -2.9839 42 1 -0.6907 -2.6178 -0.6871 43 1 0.0839 -1.3439 -1.6656 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064129506.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:01:04 Heat of formation + Delta-G solvation = 2.826554 kcal Electronic energy + Delta-G solvation = -19647.073735 eV Core-core repulsion = 16919.581999 eV Total energy + Delta-G solvation = -2727.491736 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.05383 -37.42409 -34.42318 -31.94967 -30.68687 -30.34484 -29.85624 -26.83436 -24.39935 -22.71187 -22.61275 -22.22349 -20.60426 -19.51405 -18.95473 -16.70701 -15.45802 -15.16472 -14.54393 -14.51083 -14.23572 -13.95717 -13.81110 -13.45128 -13.32634 -13.05694 -12.65730 -12.11893 -12.05450 -11.86036 -11.47019 -11.32336 -11.03691 -11.02803 -10.85279 -10.72295 -10.50289 -10.28397 -10.21816 -9.98464 -9.92694 -9.88401 -9.65888 -9.46746 -8.46636 -7.69473 -6.61896 -5.74339 -3.15274 3.39901 3.46607 3.47907 4.41301 4.53650 4.73700 4.84577 4.90743 5.19863 5.35438 5.41975 5.47950 5.48729 5.59578 5.60129 5.62282 5.70415 5.78265 5.90018 5.98075 6.01160 6.06638 6.07729 6.19057 6.21231 6.24357 6.27424 6.34065 6.39126 6.44052 6.57003 6.68029 6.69622 6.77449 6.98966 7.31919 7.69865 7.73217 7.78500 7.88444 8.47652 9.25492 9.89085 10.47868 11.34403 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.036983 B = 0.004816 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.926995 B = 5812.290954 C = 6060.254942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.596 5.596 10 C 0.149 3.851 11 C 0.045 3.955 12 N -0.530 5.530 13 C 0.059 3.941 14 C -0.083 4.083 15 C -0.113 4.113 16 C -0.117 4.117 17 C -0.118 4.118 18 C -0.121 4.121 19 C -0.103 4.103 20 C 0.034 3.966 21 C 0.179 3.821 22 H 0.253 0.747 23 H 0.025 0.975 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.025 0.975 27 H 0.064 0.936 28 H 0.023 0.977 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.078 0.922 40 H 0.021 0.979 41 H 0.062 0.938 42 H 0.025 0.975 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.777 -14.105 -8.502 16.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.319 5.319 10 C 0.023 3.977 11 C -0.085 4.085 12 N -0.254 5.254 13 C -0.069 4.069 14 C -0.102 4.102 15 C -0.151 4.151 16 C -0.155 4.155 17 C -0.156 4.156 18 C -0.159 4.159 19 C -0.141 4.141 20 C -0.095 4.095 21 C 0.053 3.947 22 H 0.063 0.937 23 H 0.043 0.957 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.043 0.957 27 H 0.083 0.917 28 H 0.041 0.959 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.097 0.903 40 H 0.040 0.960 41 H 0.080 0.920 42 H 0.043 0.957 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.246 -14.062 -8.144 16.571 hybrid contribution 1.106 1.063 -0.628 1.658 sum -2.140 -12.999 -8.773 15.828 Atomic orbital electron populations 1.70036 1.05189 1.25381 1.54224 1.25008 0.95296 0.98288 1.01137 0.86292 0.79095 0.83776 0.77630 1.21547 1.21752 1.20493 1.19219 0.92569 0.84881 1.41406 0.91691 1.44122 1.34168 1.01217 1.52389 1.20969 0.97619 0.86505 0.92652 1.22596 0.89787 0.99192 0.96901 1.61938 1.33913 1.05767 1.23795 1.22134 0.95749 0.95717 0.93327 1.21175 0.95367 0.98764 0.94874 1.21558 0.96657 0.99454 0.97474 1.21507 0.95533 1.00878 0.97588 1.21534 0.98797 0.98891 0.96360 1.21569 0.97853 0.99229 0.97239 1.21443 0.93412 1.00957 0.98287 1.22925 0.98614 0.89463 0.98503 1.20850 0.88887 0.96556 0.88433 0.93673 0.95719 0.92793 0.92234 0.95689 0.91725 0.95905 0.91011 0.92468 0.92251 0.92114 0.92532 0.92332 0.92628 0.92408 0.92152 0.92823 0.90330 0.96041 0.91961 0.95666 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.63 11.15 55.49 0.62 -26.01 16 2 C 0.00 0.03 4.94 -17.43 -0.09 -0.06 16 3 Si 0.90 21.98 29.59 -169.99 -5.03 16.95 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.25 -7.05 9.63 -15.06 -0.14 -7.20 16 8 H 0.07 1.79 7.88 -52.48 -0.41 1.38 16 9 N -0.60 -15.45 3.04 -172.01 -0.52 -15.97 16 10 C 0.15 3.26 6.69 -3.60 -0.02 3.24 16 11 C 0.04 0.83 5.62 -3.70 -0.02 0.81 16 12 N -0.53 -9.57 4.08 -234.32 -0.96 -10.53 16 13 C 0.06 0.87 4.35 -3.82 -0.02 0.85 16 14 C -0.08 -1.08 2.11 -90.62 -0.19 -1.28 16 15 C -0.11 -1.23 5.20 -26.73 -0.14 -1.37 16 16 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 17 C -0.12 -1.16 5.92 -26.74 -0.16 -1.32 16 18 C -0.12 -1.37 5.92 -26.73 -0.16 -1.53 16 19 C -0.10 -1.34 5.09 -26.73 -0.14 -1.48 16 20 C 0.03 0.68 5.46 -3.70 -0.02 0.66 16 21 C 0.18 4.41 5.42 -3.61 -0.02 4.39 16 22 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 23 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 1.13 7.95 -51.93 -0.41 0.72 16 25 H 0.06 0.96 7.99 -51.93 -0.41 0.54 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.89 7.97 -51.93 -0.41 0.48 16 28 H 0.02 0.34 8.13 -51.92 -0.42 -0.08 16 29 H 0.07 1.03 6.19 -51.93 -0.32 0.71 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 39 H 0.08 1.21 7.75 -51.93 -0.40 0.81 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 1.15 6.07 -51.93 -0.32 0.83 16 42 H 0.03 0.67 8.14 -51.92 -0.42 0.24 16 43 H 0.09 2.36 6.12 -51.93 -0.32 2.04 16 LS Contribution 321.68 15.07 4.85 4.85 Total: -1.00 -29.17 321.68 -10.38 -39.55 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -8.07 Total: -3.25 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -1.27 Total: -5.59 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: -0.86 Total: -52.51 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.17 -10.38 -39.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064129506.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.379 kcal (2) G-P(sol) polarization free energy of solvation -29.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds