Wall clock time and date at job start Sun Mar 29 2020 23:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46904 * 111.00100 * 2 1 4 4 C 1.50699 * 109.47002 * 286.07677 * 3 2 1 5 5 O 1.21293 * 119.99808 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99943 * 180.02562 * 4 3 2 7 7 C 1.37100 * 119.99839 * 180.02562 * 6 4 3 8 8 H 1.07997 * 119.99975 * 359.97438 * 7 6 4 9 9 C 1.38946 * 119.99871 * 180.02562 * 7 6 4 10 10 N 1.31411 * 119.99987 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 119.99927 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47080 * 90.00379 * 11 9 7 13 13 H 1.48500 * 109.46919 * 210.00336 * 11 9 7 14 14 H 1.48497 * 109.47139 * 330.00167 * 11 9 7 15 15 C 1.46900 * 110.99727 * 123.95035 * 2 1 3 16 16 C 1.53001 * 109.47091 * 164.70567 * 15 2 1 17 17 C 1.52996 * 117.49968 * 0.76115 * 16 15 2 18 18 C 1.52993 * 117.49895 * 292.09840 * 16 15 2 19 19 C 1.52996 * 109.47266 * 284.70806 * 15 2 1 20 20 C 1.53006 * 117.50026 * 135.10527 * 19 15 2 21 21 C 1.53000 * 117.50207 * 66.44520 * 19 15 2 22 22 H 1.08995 * 109.47448 * 305.87231 * 1 2 3 23 23 H 1.09000 * 109.46578 * 65.86751 * 1 2 3 24 24 H 1.08994 * 109.47205 * 185.86515 * 1 2 3 25 25 H 1.08995 * 109.46998 * 46.07323 * 3 2 1 26 26 H 1.09004 * 109.46866 * 166.07485 * 3 2 1 27 27 H 0.96997 * 120.00058 * 359.97438 * 6 4 3 28 28 H 0.97001 * 120.00211 * 179.97438 * 10 9 7 29 29 H 1.09002 * 109.47065 * 44.70191 * 15 2 1 30 30 H 1.09004 * 115.54474 * 146.43123 * 16 15 2 31 31 H 1.08998 * 117.49695 * 0.02562 * 17 16 15 32 32 H 1.08998 * 117.49736 * 145.02042 * 17 16 15 33 33 H 1.09004 * 117.50041 * 214.98073 * 18 16 15 34 34 H 1.09001 * 117.49979 * 359.97438 * 18 16 15 35 35 H 1.08999 * 115.55053 * 280.77851 * 19 15 2 36 36 H 1.09001 * 117.49933 * 0.02562 * 20 19 15 37 37 H 1.09000 * 117.49531 * 145.01728 * 20 19 15 38 38 H 1.08994 * 117.50458 * 214.98254 * 21 19 15 39 39 H 1.09005 * 117.49337 * 359.97438 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.8082 1.9814 -1.3652 5 8 1.2878 1.3368 -2.2512 6 7 2.2199 3.2427 -1.6020 7 6 2.0490 3.7978 -2.8440 8 1 1.5849 3.2242 -3.6326 9 6 2.4739 5.0979 -3.0882 10 7 2.3106 5.6298 -4.2787 11 14 3.2773 6.0898 -1.7243 12 1 4.7456 5.8695 -1.7511 13 1 2.9895 7.5326 -1.9261 14 1 2.7355 5.6558 -0.4116 15 6 1.9954 -0.7659 1.1377 16 6 3.4772 -1.0690 0.9065 17 6 4.1147 -0.5382 -0.3790 18 6 3.8325 -2.0348 -0.2256 19 6 1.8363 0.0522 2.4207 20 6 1.2986 -0.6706 3.6574 21 6 0.4133 0.3297 2.9097 22 1 -0.3634 0.6022 0.8327 23 1 -0.3632 0.4202 -0.9379 24 1 -0.3633 -1.0222 0.1050 25 1 1.4602 1.9661 0.7401 26 1 3.0570 1.3531 0.2473 27 1 2.6364 3.7580 -0.8936 28 1 2.6068 6.5376 -4.4492 29 1 1.4437 -1.7012 1.2324 30 1 4.0972 -1.0941 1.8027 31 1 3.4786 0.0273 -1.0599 32 1 5.1543 -0.2144 -0.3287 33 1 4.6865 -2.6951 -0.0745 34 1 3.0106 -2.4547 -0.8055 35 1 2.5830 0.8305 2.5776 36 1 1.0586 -1.7292 3.5570 37 1 1.6914 -0.3676 4.6279 38 1 0.2240 1.2903 3.3887 39 1 -0.4094 -0.0703 2.3171 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066497175.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:31:47 Heat of formation + Delta-G solvation = 38.759493 kcal Electronic energy + Delta-G solvation = -19389.651989 eV Core-core repulsion = 16527.885328 eV Total energy + Delta-G solvation = -2861.766661 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.92167 -37.93107 -36.31596 -34.64221 -33.70439 -31.61010 -28.44847 -27.93768 -24.71546 -22.85012 -22.47913 -22.02168 -21.17748 -19.75864 -19.06591 -18.07471 -16.43035 -16.13608 -15.25522 -14.99558 -14.74249 -14.56487 -14.23964 -13.48892 -13.18572 -12.96800 -12.81077 -12.40991 -12.05612 -11.84716 -11.68054 -11.42942 -11.38397 -11.16840 -11.07788 -10.79207 -10.56457 -10.43915 -10.35891 -9.93731 -9.81976 -9.73708 -9.49475 -8.50908 -8.12291 -7.78825 -6.26623 -3.77410 3.05301 3.09518 3.17379 3.62817 3.81996 3.95363 4.12737 4.15580 4.52852 4.74926 4.84032 4.94960 5.11999 5.17081 5.25383 5.26923 5.36430 5.50692 5.51950 5.63937 5.71793 5.80212 5.80939 5.91009 5.93998 5.95321 6.00083 6.05638 6.14489 6.19293 6.39601 6.46850 6.69431 7.25439 7.40997 7.64385 8.20357 8.66332 9.01059 9.48452 9.91198 10.86800 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.024493 B = 0.006081 C = 0.005784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.892574 B = 4603.297918 C = 4840.104921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.503 5.503 3 C 0.038 3.962 4 C 0.454 3.546 5 O -0.558 6.558 6 N -0.595 5.595 7 C -0.302 4.302 8 H 0.119 0.881 9 C 0.041 3.959 10 N -0.884 5.884 11 Si 0.878 3.122 12 H -0.271 1.271 13 H -0.277 1.277 14 H -0.270 1.270 15 C 0.143 3.857 16 C -0.154 4.154 17 C -0.176 4.176 18 C -0.169 4.169 19 C -0.179 4.179 20 C -0.175 4.175 21 C -0.186 4.186 22 H 0.032 0.968 23 H 0.084 0.916 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.095 0.905 27 H 0.369 0.631 28 H 0.272 0.728 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.123 0.877 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.136 -10.495 16.233 19.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.225 5.225 3 C -0.093 4.093 4 C 0.239 3.761 5 O -0.440 6.440 6 N -0.235 5.235 7 C -0.430 4.430 8 H 0.137 0.863 9 C -0.162 4.162 10 N -0.524 5.524 11 Si 0.704 3.296 12 H -0.196 1.196 13 H -0.203 1.203 14 H -0.196 1.196 15 C 0.035 3.965 16 C -0.172 4.172 17 C -0.213 4.213 18 C -0.206 4.206 19 C -0.199 4.199 20 C -0.213 4.213 21 C -0.223 4.223 22 H 0.050 0.950 23 H 0.103 0.897 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.113 0.887 27 H 0.201 0.799 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.119 0.881 31 H 0.141 0.859 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.122 0.878 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.950 -10.984 15.012 18.625 hybrid contribution 0.475 1.469 1.837 2.400 sum 1.425 -9.515 16.849 19.403 Atomic orbital electron populations 1.22689 0.87090 1.00844 1.02454 1.61815 1.08117 1.12788 1.39788 1.22040 1.01503 0.89456 0.96314 1.19765 0.84252 0.82442 0.89593 1.90548 1.46124 1.61099 1.46183 1.42227 1.55846 1.12805 1.12603 1.19420 1.37839 0.97684 0.88092 0.86319 1.25015 0.97926 0.96665 0.96565 1.69621 1.46745 1.15607 1.20461 0.86701 0.80347 0.80747 0.81779 1.19641 1.20268 1.19574 1.20865 0.94040 0.95553 0.86074 1.22250 0.95334 1.06491 0.93138 1.23252 1.00872 0.97101 1.00063 1.22834 1.02837 0.92997 1.01960 1.23064 0.97509 1.03131 0.96183 1.22921 1.04524 0.97960 0.95903 1.23190 0.94327 1.00819 1.03949 0.94958 0.89725 0.92390 0.93230 0.88737 0.79851 0.91715 0.89945 0.88098 0.85906 0.89842 0.89781 0.88610 0.87789 0.88872 0.89152 0.88985 0.87872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.23 60.07 0.49 0.75 16 2 N -0.50 -7.90 3.37 -236.33 -0.80 -8.70 16 3 C 0.04 0.65 3.19 -4.97 -0.02 0.63 16 4 C 0.45 10.32 7.01 -10.99 -0.08 10.24 16 5 O -0.56 -14.87 14.53 5.55 0.08 -14.78 16 6 N -0.59 -14.28 5.09 -10.97 -0.06 -14.34 16 7 C -0.30 -8.58 10.16 -14.93 -0.15 -8.73 16 8 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 9 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 10 N -0.88 -26.04 13.96 55.50 0.77 -25.27 16 11 Si 0.88 19.60 27.74 -169.99 -4.71 14.88 16 12 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 13 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 14 H -0.27 -5.52 6.52 56.52 0.37 -5.15 16 15 C 0.14 1.80 2.29 -67.71 -0.15 1.64 16 16 C -0.15 -1.89 5.38 -90.62 -0.49 -2.38 16 17 C -0.18 -2.54 8.27 -26.70 -0.22 -2.76 16 18 C -0.17 -2.15 10.25 -26.70 -0.27 -2.43 16 19 C -0.18 -1.98 3.63 -90.62 -0.33 -2.31 16 20 C -0.18 -1.63 10.18 -26.69 -0.27 -1.90 16 21 C -0.19 -1.93 8.78 -26.69 -0.23 -2.17 16 22 H 0.03 0.44 4.91 -51.93 -0.25 0.19 16 23 H 0.08 1.57 6.68 -51.93 -0.35 1.22 16 24 H 0.06 0.76 7.87 -51.93 -0.41 0.35 16 25 H 0.05 0.79 7.40 -51.93 -0.38 0.40 16 26 H 0.09 1.48 5.67 -51.93 -0.29 1.19 16 27 H 0.37 7.86 5.76 -40.82 -0.24 7.63 16 28 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.08 1.00 7.64 -51.93 -0.40 0.61 16 30 H 0.10 1.10 8.05 -51.93 -0.42 0.68 16 31 H 0.12 2.21 5.14 -51.93 -0.27 1.95 16 32 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.10 1.18 7.99 -51.93 -0.41 0.76 16 36 H 0.09 0.81 8.09 -51.93 -0.42 0.39 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.10 1.09 5.76 -51.93 -0.30 0.79 16 LS Contribution 305.65 15.07 4.61 4.61 Total: -1.00 -31.10 305.65 -7.73 -38.84 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -5.81 Total: 13.13 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -1.82 Total: -8.36 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: -0.08 Total: -48.30 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.08 Total: -14.78 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.71 Total: 14.88 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.10 -7.73 -38.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066497175.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.595 kcal (2) G-P(sol) polarization free energy of solvation -31.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds