Wall clock time and date at job start Sun Mar 29 2020 23:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36938 * 120.00094 * 2 1 4 4 H 1.07995 * 119.99910 * 201.57317 * 3 2 1 5 5 C 1.38813 * 119.99642 * 21.57718 * 3 2 1 6 6 N 1.31620 * 120.00591 * 15.07520 * 5 3 2 7 7 Si 1.86803 * 119.99783 * 195.07610 * 5 3 2 8 8 H 1.48498 * 109.47040 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47174 * 119.99805 * 7 5 3 10 10 H 1.48496 * 109.47286 * 240.00270 * 7 5 3 11 11 C 1.46504 * 119.99973 * 179.97438 * 2 1 3 12 12 C 1.50700 * 109.46745 * 90.00422 * 11 2 1 13 13 O 1.21281 * 119.99913 * 0.02562 * 12 11 2 14 14 N 1.34773 * 120.00058 * 180.02562 * 12 11 2 15 15 C 1.46504 * 120.00124 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46789 * 255.93866 * 15 14 12 17 17 C 1.52999 * 117.49591 * 128.74272 * 16 15 14 18 18 C 1.53001 * 117.49658 * 60.08963 * 16 15 14 19 19 C 1.52997 * 109.47042 * 135.94207 * 15 14 12 20 20 C 1.53007 * 117.49628 * 251.77031 * 19 15 14 21 21 C 1.53007 * 117.49381 * 183.11354 * 19 15 14 22 22 H 1.08996 * 109.47754 * 272.94239 * 1 2 3 23 23 H 1.09005 * 109.47125 * 32.94348 * 1 2 3 24 24 H 1.09000 * 109.47196 * 152.93757 * 1 2 3 25 25 H 0.97002 * 120.00084 * 180.02562 * 6 5 3 26 26 H 1.08999 * 109.46860 * 330.00751 * 11 2 1 27 27 H 1.08998 * 109.46900 * 210.00392 * 11 2 1 28 28 H 0.97002 * 120.00221 * 359.97438 * 14 12 11 29 29 H 1.08995 * 109.46892 * 15.93736 * 15 14 12 30 30 H 1.08997 * 115.55257 * 274.41602 * 16 15 14 31 31 H 1.09001 * 117.50147 * 0.02562 * 17 16 15 32 32 H 1.09006 * 117.49633 * 145.02333 * 17 16 15 33 33 H 1.08999 * 117.50048 * 214.97999 * 18 16 15 34 34 H 1.09010 * 117.50237 * 359.97118 * 18 16 15 35 35 H 1.08994 * 115.55630 * 37.44576 * 19 15 14 36 36 H 1.08990 * 117.49908 * 0.02562 * 20 19 15 37 37 H 1.08994 * 117.49688 * 145.02305 * 20 19 15 38 38 H 1.08998 * 117.49666 * 214.97865 * 21 19 15 39 39 H 1.08992 * 117.50131 * 359.97360 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1729 1.2186 -0.3439 5 6 1.5285 2.3459 0.4421 6 7 0.4087 2.2718 1.1298 7 14 2.2820 4.0122 0.0611 8 1 3.5314 3.8238 -0.7191 9 1 1.3205 4.8208 -0.7308 10 1 2.5934 4.7167 1.3307 11 6 2.1975 -1.2688 0.0006 12 6 2.4487 -1.7043 -1.4201 13 8 2.0551 -1.0218 -2.3422 14 7 3.1108 -2.8522 -1.6659 15 6 3.3555 -3.2753 -3.0470 16 6 2.3934 -4.4079 -3.4114 17 6 1.5823 -4.2586 -4.7001 18 6 0.8941 -4.1113 -3.3408 19 6 4.7976 -3.7681 -3.1815 20 6 5.7777 -2.8825 -3.9536 21 6 5.2737 -4.1882 -4.5736 22 1 -0.3634 0.0527 1.0262 23 1 -0.3634 0.8625 -0.5589 24 1 -0.3633 -0.9151 -0.4675 25 1 -0.0255 3.0825 1.4384 26 1 1.6083 -2.0282 0.5146 27 1 3.1498 -1.1382 0.5144 28 1 3.4259 -3.3978 -0.9285 29 1 3.1954 -2.4322 -3.7191 30 1 2.7217 -5.4103 -3.1366 31 1 1.7343 -3.3537 -5.2885 32 1 1.3766 -5.1629 -5.2729 33 1 0.2359 -4.9187 -3.0199 34 1 0.5930 -3.1095 -3.0343 35 1 5.1863 -4.3235 -2.3279 36 1 5.3952 -1.9486 -4.3653 37 1 6.8111 -2.8555 -3.6081 38 1 5.9758 -5.0196 -4.6358 39 1 4.5594 -4.1138 -5.3935 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972450.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:31:39 Heat of formation + Delta-G solvation = 38.385143 kcal Electronic energy + Delta-G solvation = -18985.323370 eV Core-core repulsion = 16123.540476 eV Total energy + Delta-G solvation = -2861.782894 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.58254 -37.71834 -36.14911 -35.01717 -33.31289 -31.20424 -28.21238 -26.16398 -25.61237 -22.57427 -22.23933 -21.63724 -21.43012 -20.18375 -19.53485 -16.78333 -16.27143 -16.20344 -15.87558 -14.87334 -14.57592 -14.31985 -13.79024 -13.73715 -13.31374 -12.87945 -12.70781 -11.86345 -11.70090 -11.60691 -11.52840 -11.36130 -11.12057 -10.81132 -10.65266 -10.52907 -10.38974 -10.31445 -10.27453 -9.91860 -9.88329 -9.83935 -9.08650 -8.54687 -8.44224 -6.72855 -5.68661 -3.11308 3.40351 3.46484 3.47592 3.50823 3.54536 3.80745 4.07913 4.53930 4.58735 4.81619 4.96745 5.02048 5.07909 5.11567 5.34170 5.42727 5.49197 5.57964 5.62177 5.70729 5.71993 5.85634 5.95150 5.99101 6.07412 6.12357 6.20809 6.27289 6.35867 6.41759 6.82514 6.99477 7.46188 7.73464 7.87847 8.10294 8.42521 9.05986 9.27192 9.89196 10.36191 11.37585 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.026621 B = 0.005481 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.567153 B = 5106.961079 C = 5679.804459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.166 3.834 2 N -0.575 5.575 3 C -0.246 4.246 4 H 0.066 0.934 5 C 0.002 3.998 6 N -0.907 5.907 7 Si 0.905 3.095 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.291 1.291 11 C 0.135 3.865 12 C 0.479 3.521 13 O -0.526 6.526 14 N -0.735 5.735 15 C 0.199 3.801 16 C -0.159 4.159 17 C -0.176 4.176 18 C -0.171 4.171 19 C -0.157 4.157 20 C -0.177 4.177 21 C -0.171 4.171 22 H 0.030 0.970 23 H 0.046 0.954 24 H -0.004 1.004 25 H 0.252 0.748 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.393 0.607 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.696 -15.977 -7.542 18.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.295 5.295 3 C -0.376 4.376 4 H 0.084 0.916 5 C -0.196 4.196 6 N -0.552 5.552 7 Si 0.735 3.265 8 H -0.204 1.204 9 H -0.216 1.216 10 H -0.218 1.218 11 C 0.002 3.998 12 C 0.263 3.737 13 O -0.399 6.399 14 N -0.389 5.389 15 C 0.093 3.907 16 C -0.179 4.179 17 C -0.213 4.213 18 C -0.208 4.208 19 C -0.176 4.176 20 C -0.214 4.214 21 C -0.209 4.209 22 H 0.048 0.952 23 H 0.065 0.935 24 H 0.014 0.986 25 H 0.062 0.938 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.226 0.774 29 H 0.112 0.888 30 H 0.119 0.881 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.246 -15.239 -8.110 18.357 hybrid contribution 0.536 0.554 0.041 0.772 sum 6.781 -14.684 -8.069 18.075 Atomic orbital electron populations 1.20782 0.82079 0.96173 0.98767 1.43556 1.01969 0.99823 1.84165 1.19167 0.97323 0.85271 1.35826 0.91616 1.24916 0.97911 0.98354 0.98380 1.70099 1.19833 1.26881 1.38407 0.86180 0.78545 0.84270 0.77522 1.20358 1.21573 1.21783 1.20658 0.98306 0.90464 0.90347 1.23433 0.76014 0.78996 0.95213 1.90618 1.49532 1.53190 1.46568 1.46332 1.60432 1.25250 1.06867 1.19940 0.89808 0.95111 0.85846 1.22616 0.93189 0.99771 1.02295 1.22943 1.04764 1.02826 0.90785 1.22903 0.94310 1.03452 1.00110 1.22493 0.95102 1.04127 0.95839 1.23025 0.99110 0.95136 1.04107 1.22885 1.03425 0.98438 0.96125 0.95200 0.93526 0.98561 0.93825 0.91528 0.90486 0.77418 0.88822 0.88054 0.88919 0.89140 0.89253 0.88174 0.87742 0.88650 0.88900 0.88958 0.88618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.34 8.98 59.85 0.54 4.87 16 2 N -0.58 -15.10 2.41 -182.50 -0.44 -15.54 16 3 C -0.25 -7.10 9.66 -15.06 -0.15 -7.24 16 4 H 0.07 1.89 7.87 -52.49 -0.41 1.48 16 5 C 0.00 0.06 5.04 -17.43 -0.09 -0.02 16 6 N -0.91 -27.14 10.76 55.49 0.60 -26.54 16 7 Si 0.90 22.83 29.58 -169.99 -5.03 17.80 16 8 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 9 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 10 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 11 C 0.14 2.76 6.13 -5.19 -0.03 2.73 16 12 C 0.48 9.37 7.62 -10.99 -0.08 9.29 16 13 O -0.53 -12.73 15.51 5.56 0.09 -12.64 16 14 N -0.74 -10.62 4.82 -53.81 -0.26 -10.88 16 15 C 0.20 2.65 2.64 -67.93 -0.18 2.47 16 16 C -0.16 -1.88 5.09 -90.62 -0.46 -2.34 16 17 C -0.18 -2.04 10.18 -26.70 -0.27 -2.31 16 18 C -0.17 -2.26 10.13 -26.70 -0.27 -2.53 16 19 C -0.16 -1.70 5.38 -90.61 -0.49 -2.18 16 20 C -0.18 -1.93 10.18 -26.69 -0.27 -2.20 16 21 C -0.17 -1.62 9.97 -26.69 -0.27 -1.88 16 22 H 0.03 0.80 7.50 -51.93 -0.39 0.42 16 23 H 0.05 1.33 7.15 -51.93 -0.37 0.96 16 24 H 0.00 -0.10 8.05 -51.93 -0.42 -0.52 16 25 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 27 H 0.08 1.48 8.04 -51.93 -0.42 1.06 16 28 H 0.39 4.48 8.79 -40.82 -0.36 4.12 16 29 H 0.09 1.56 6.60 -51.93 -0.34 1.22 16 30 H 0.10 1.05 8.11 -51.93 -0.42 0.63 16 31 H 0.09 1.16 8.05 -51.93 -0.42 0.74 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.10 1.68 7.54 -51.92 -0.39 1.29 16 35 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.10 1.18 8.07 -51.93 -0.42 0.76 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 326.40 15.07 4.92 4.92 Total: -1.00 -33.18 326.40 -8.60 -41.78 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -6.45 Total: 2.46 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -2.02 Total: -1.36 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: -0.10 Total: -52.96 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.09 Total: -12.64 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.03 Total: 17.80 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.18 -8.60 -41.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972450.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.163 kcal (2) G-P(sol) polarization free energy of solvation -33.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds