Wall clock time and date at job start Mon Mar 30 2020 00:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 119.99948 * 2 1 4 4 H 1.48492 * 109.47162 * 239.99814 * 3 2 1 5 5 H 1.48498 * 109.46674 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47156 * 119.99631 * 3 2 1 7 7 C 1.38814 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99743 * 163.08273 * 7 2 1 9 9 N 1.36940 * 119.99647 * 343.08217 * 7 2 1 10 10 C 1.46926 * 120.63342 * 331.84222 * 9 7 2 11 11 C 1.53193 * 108.77441 * 233.58698 * 10 9 7 12 12 C 1.53036 * 109.31306 * 305.36643 * 11 10 9 13 13 C 1.53040 * 109.53002 * 61.37518 * 12 11 10 14 14 H 1.08996 * 109.49747 * 58.57150 * 13 12 11 15 15 N 1.46896 * 109.50027 * 178.67480 * 13 12 11 16 16 C 1.48002 * 111.00100 * 308.71723 * 15 13 12 17 17 C 1.50441 * 112.82575 * 191.34549 * 16 15 13 18 18 C 1.54305 * 108.50138 * 93.73142 * 17 16 15 19 19 C 1.45882 * 112.18080 * 281.46123 * 18 17 16 20 20 C 1.54312 * 112.18696 * 61.11972 * 19 18 17 21 21 C 1.48001 * 111.00292 * 179.97438 * 15 13 12 22 22 C 1.46923 * 120.62487 * 151.82393 * 9 7 2 23 23 H 0.97004 * 120.00436 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.58435 * 113.80293 * 10 9 7 25 25 H 1.09000 * 109.69948 * 353.44635 * 10 9 7 26 26 H 1.08998 * 109.49406 * 185.40870 * 11 10 9 27 27 H 1.09004 * 109.52242 * 65.33804 * 11 10 9 28 28 H 1.09000 * 109.45761 * 181.38220 * 12 11 10 29 29 H 1.08997 * 109.45972 * 301.35487 * 12 11 10 30 30 H 1.08994 * 108.81201 * 312.20978 * 16 15 13 31 31 H 1.09002 * 108.80947 * 70.48398 * 16 15 13 32 32 H 1.09000 * 109.63421 * 334.02098 * 17 16 15 33 33 H 1.09007 * 109.79234 * 213.52900 * 17 16 15 34 34 H 1.08995 * 108.94084 * 160.76678 * 18 17 16 35 35 H 1.09001 * 108.86866 * 42.10372 * 18 17 16 36 36 H 1.09004 * 108.93743 * 300.41885 * 19 18 17 37 37 H 1.08996 * 108.86359 * 181.77195 * 19 18 17 38 38 H 1.08995 * 109.63037 * 161.76034 * 20 19 18 39 39 H 1.09000 * 109.79571 * 41.25977 * 20 19 18 40 40 H 1.08994 * 108.81102 * 205.70570 * 21 15 13 41 41 H 1.09003 * 108.80588 * 323.97360 * 21 15 13 42 42 H 1.09001 * 109.58565 * 246.19526 * 22 9 7 43 43 H 1.08997 * 109.58946 * 6.48001 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2224 -0.2716 9 7 1.3700 -2.3622 0.3462 10 6 0.2259 -2.3400 1.2678 11 6 0.4972 -3.3191 2.4143 12 6 0.8118 -4.7007 1.8362 13 6 2.0675 -4.6171 0.9652 14 1 2.9021 -4.2531 1.5643 15 7 2.3870 -5.9497 0.4363 16 6 2.4298 -6.9549 1.5217 17 6 3.0142 -8.2683 1.0782 18 6 4.5234 -8.2661 1.3995 19 6 5.2932 -7.5025 0.4235 20 6 4.8717 -6.0187 0.3809 21 6 3.5983 -5.9068 -0.4131 22 6 1.8139 -3.6528 -0.1979 23 1 -0.4851 0.8400 0.0004 24 1 -0.6771 -2.6406 0.7365 25 1 0.0965 -1.3346 1.6686 26 1 -0.3834 -3.3840 3.0533 27 1 1.3466 -2.9678 3.0001 28 1 0.9812 -5.4051 2.6506 29 1 -0.0282 -5.0408 1.2306 30 1 3.0308 -6.5617 2.3415 31 1 1.4155 -7.1256 1.8828 32 1 2.8684 -8.3902 0.0049 33 1 2.5279 -9.0868 1.6091 34 1 4.8847 -9.2944 1.4087 35 1 4.6729 -7.8301 2.3872 36 1 5.1464 -7.9406 -0.5638 37 1 6.3501 -7.5628 0.6832 38 1 5.6542 -5.4294 -0.0970 39 1 4.7050 -5.6531 1.3941 40 1 3.5558 -6.7290 -1.1275 41 1 3.6083 -4.9660 -0.9636 42 1 1.0403 -4.0605 -0.8487 43 1 2.7333 -3.5129 -0.7664 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069873524.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:04:29 Heat of formation + Delta-G solvation = 15.762986 kcal Electronic energy + Delta-G solvation = -20062.591525 eV Core-core repulsion = 17335.660755 eV Total energy + Delta-G solvation = -2726.930770 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.51298 -37.10460 -34.24233 -32.43895 -32.02528 -30.35480 -28.84964 -25.72379 -25.55494 -24.44147 -21.73381 -21.66657 -20.46813 -19.63853 -18.53633 -16.90279 -15.92722 -15.52838 -14.84446 -14.49613 -14.29319 -13.79022 -13.52439 -13.29485 -13.11395 -12.90809 -12.52742 -12.34271 -12.14625 -11.93736 -11.83061 -11.08444 -11.02008 -10.84576 -10.73365 -10.56397 -10.53900 -10.43596 -10.25986 -10.14838 -9.99522 -9.83875 -9.54463 -9.24951 -8.42211 -7.76827 -6.61316 -5.74543 -3.16888 3.40448 3.46043 3.47292 4.11852 4.55126 4.68367 4.75008 4.97157 5.19454 5.28883 5.40128 5.46709 5.51470 5.55181 5.64717 5.67675 5.75163 5.81404 5.95976 5.97356 6.01230 6.07680 6.09446 6.11698 6.18838 6.25734 6.33401 6.38395 6.42670 6.52258 6.67993 6.75882 6.86123 6.93118 7.01774 7.43680 7.57556 7.59997 7.72537 7.83243 8.50138 9.26121 9.89827 10.47039 11.33992 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.032257 B = 0.005735 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.822914 B = 4881.064647 C = 5442.180795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.252 4.252 8 H 0.063 0.937 9 N -0.591 5.591 10 C 0.170 3.830 11 C -0.142 4.142 12 C -0.102 4.102 13 C 0.074 3.926 14 H 0.034 0.966 15 N -0.544 5.544 16 C 0.064 3.936 17 C -0.120 4.120 18 C -0.120 4.120 19 C -0.116 4.116 20 C -0.148 4.148 21 C 0.054 3.946 22 C 0.158 3.842 23 H 0.254 0.746 24 H 0.018 0.982 25 H 0.085 0.915 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.028 0.972 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.026 0.974 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.418 -14.701 3.173 16.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.731 3.269 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.382 4.382 8 H 0.081 0.919 9 N -0.314 5.314 10 C 0.045 3.955 11 C -0.182 4.182 12 C -0.140 4.140 13 C -0.035 4.035 14 H 0.052 0.948 15 N -0.269 5.269 16 C -0.063 4.063 17 C -0.158 4.158 18 C -0.157 4.157 19 C -0.153 4.153 20 C -0.187 4.187 21 C -0.073 4.073 22 C 0.031 3.969 23 H 0.064 0.936 24 H 0.036 0.964 25 H 0.103 0.897 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.046 0.954 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.044 0.956 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.942 -14.678 2.860 16.091 hybrid contribution 1.132 1.088 0.615 1.686 sum 7.073 -13.590 3.475 15.710 Atomic orbital electron populations 1.70029 1.05234 1.25524 1.53849 1.25020 0.95257 0.98300 1.00952 0.86387 0.78927 0.83473 0.78085 1.20902 1.21611 1.21115 1.19117 0.92434 0.84854 1.41780 0.91919 1.44007 1.35772 1.01270 1.50329 1.20779 0.88646 0.98124 0.87989 1.22205 0.99911 0.96164 0.99907 1.21512 0.97557 0.97190 0.97744 1.22174 0.96334 0.87579 0.97419 0.94789 1.61878 1.34907 1.06510 1.23639 1.21723 1.00302 0.91566 0.92750 1.21434 0.94816 0.96996 1.02537 1.20601 0.95732 0.99854 0.99520 1.20542 0.99243 0.95658 0.99863 1.21910 0.99072 0.96082 1.01603 1.21953 0.86924 1.02751 0.95710 1.20914 0.97680 0.86083 0.92235 0.93624 0.96383 0.89657 0.93192 0.93053 0.93817 0.92027 0.95405 0.91248 0.90766 0.91605 0.92548 0.92502 0.92112 0.92769 0.91618 0.91886 0.91495 0.90443 0.95622 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.51 11.19 55.49 0.62 -25.89 16 2 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 3 Si 0.90 21.91 29.59 -169.99 -5.03 16.88 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.25 -7.04 9.58 -15.06 -0.14 -7.18 16 8 H 0.06 1.72 7.88 -52.49 -0.41 1.30 16 9 N -0.59 -15.18 2.99 -172.32 -0.52 -15.70 16 10 C 0.17 4.18 5.30 -3.71 -0.02 4.16 16 11 C -0.14 -2.83 6.08 -26.61 -0.16 -2.99 16 12 C -0.10 -1.83 4.70 -26.69 -0.13 -1.96 16 13 C 0.07 1.37 2.04 -67.59 -0.14 1.23 16 14 H 0.03 0.68 7.73 -51.93 -0.40 0.28 16 15 N -0.54 -8.47 4.58 -227.75 -1.04 -9.52 16 16 C 0.06 0.85 3.95 -4.49 -0.02 0.83 16 17 C -0.12 -1.31 5.63 -27.33 -0.15 -1.46 16 18 C -0.12 -1.21 5.31 -29.42 -0.16 -1.36 16 19 C -0.12 -1.21 5.30 -29.41 -0.16 -1.36 16 20 C -0.15 -1.86 5.58 -27.30 -0.15 -2.01 16 21 C 0.05 0.77 5.00 -4.47 -0.02 0.74 16 22 C 0.16 3.45 5.50 -3.71 -0.02 3.43 16 23 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.09 2.32 6.07 -51.93 -0.31 2.01 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.04 0.70 6.46 -51.93 -0.34 0.36 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.03 0.39 6.49 -51.93 -0.34 0.05 16 31 H 0.07 0.93 6.84 -51.93 -0.36 0.58 16 32 H 0.07 0.85 7.08 -51.93 -0.37 0.48 16 33 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.60 7.51 -51.93 -0.39 0.21 16 36 H 0.06 0.61 7.52 -51.93 -0.39 0.22 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.89 6.63 -51.93 -0.34 0.54 16 40 H 0.07 0.87 6.59 -51.93 -0.34 0.53 16 41 H 0.08 1.21 5.55 -51.93 -0.29 0.92 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.05 1.10 6.06 -51.93 -0.31 0.79 16 LS Contribution 308.56 15.07 4.65 4.65 Total: -1.00 -28.90 308.56 -10.21 -39.10 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -7.54 Total: -1.60 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -1.35 Total: -7.93 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: -0.94 Total: -51.10 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.90 -10.21 -39.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069873524.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.864 kcal (2) G-P(sol) polarization free energy of solvation -28.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds