Wall clock time and date at job start Mon Mar 30 2020 00:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00083 * 2 1 4 4 H 1.48501 * 109.46879 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47056 * 299.99975 * 3 2 1 6 6 H 1.48501 * 109.46841 * 60.00181 * 3 2 1 7 7 C 1.38811 * 119.99703 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00117 * 163.00054 * 7 2 1 9 9 N 1.36938 * 120.00216 * 342.99329 * 7 2 1 10 10 C 1.46927 * 120.62913 * 151.75688 * 9 7 2 11 11 C 1.53190 * 108.77452 * 126.37365 * 10 9 7 12 12 C 1.53043 * 109.31685 * 54.63301 * 11 10 9 13 13 C 1.53039 * 109.53640 * 298.63533 * 12 11 10 14 14 H 1.08998 * 109.49987 * 301.41595 * 13 12 11 15 15 N 1.46901 * 109.52645 * 181.33150 * 13 12 11 16 16 C 1.48000 * 110.99602 * 303.80129 * 15 13 12 17 17 C 1.50453 * 112.82380 * 191.34280 * 16 15 13 18 18 C 1.54310 * 108.49539 * 93.72936 * 17 16 15 19 19 C 1.45876 * 112.18454 * 281.45724 * 18 17 16 20 20 C 1.54316 * 112.17978 * 61.12825 * 19 18 17 21 21 C 1.47991 * 111.00140 * 175.08278 * 15 13 12 22 22 C 1.46921 * 120.63033 * 331.73778 * 9 7 2 23 23 H 0.97002 * 120.00070 * 359.97438 * 1 2 3 24 24 H 1.09009 * 109.58434 * 246.15834 * 10 9 7 25 25 H 1.09000 * 109.58875 * 6.43729 * 10 9 7 26 26 H 1.09004 * 109.49681 * 174.58364 * 11 10 9 27 27 H 1.08996 * 109.49739 * 294.68027 * 11 10 9 28 28 H 1.08997 * 109.46203 * 178.61671 * 12 11 10 29 29 H 1.09003 * 109.45853 * 58.65356 * 12 11 10 30 30 H 1.08999 * 108.81513 * 312.20852 * 16 15 13 31 31 H 1.08999 * 108.81170 * 70.48094 * 16 15 13 32 32 H 1.08995 * 109.63167 * 334.02277 * 17 16 15 33 33 H 1.09000 * 109.79614 * 213.52255 * 17 16 15 34 34 H 1.09007 * 108.93722 * 160.76979 * 18 17 16 35 35 H 1.08997 * 108.93993 * 42.16308 * 18 17 16 36 36 H 1.08995 * 108.94361 * 300.42906 * 19 18 17 37 37 H 1.08995 * 108.93980 * 181.81971 * 19 18 17 38 38 H 1.09003 * 109.63096 * 161.75600 * 20 19 18 39 39 H 1.08999 * 109.79764 * 41.26018 * 20 19 18 40 40 H 1.09002 * 108.80985 * 205.70090 * 21 15 13 41 41 H 1.09004 * 108.81168 * 323.97184 * 21 15 13 42 42 H 1.08999 * 109.58998 * 113.84428 * 22 9 7 43 43 H 1.08999 * 109.58814 * 353.40945 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0548 -1.2226 -0.2740 9 7 1.3704 -2.3623 0.3458 10 6 1.8125 -3.6527 -0.2002 11 6 2.0693 -4.6177 0.9616 12 6 0.8164 -4.7015 1.8365 13 6 0.5036 -3.3200 2.4161 14 1 1.3550 -2.9688 2.9990 15 7 -0.6804 -3.4072 3.2812 16 6 -1.8359 -3.9658 2.5441 17 6 -3.1315 -3.8239 3.2956 18 6 -3.8234 -2.5231 2.8372 19 6 -3.2401 -1.3399 3.4599 20 6 -1.7485 -1.1692 3.1030 21 6 -0.9433 -2.1146 3.9522 22 6 0.2290 -2.3403 1.2707 23 1 -0.4850 0.8401 0.0004 24 1 1.0369 -4.0600 -0.8489 25 1 2.7302 -3.5127 -0.7714 26 1 2.3049 -5.6064 0.5679 27 1 2.9060 -4.2542 1.5582 28 1 0.9880 -5.4062 2.6500 29 1 -0.0256 -5.0413 1.2333 30 1 -1.9257 -3.4498 1.5881 31 1 -1.6536 -5.0235 2.3543 32 1 -2.9305 -3.7743 4.3658 33 1 -3.7767 -4.6763 3.0832 34 1 -4.8809 -2.5744 3.0968 35 1 -3.7305 -2.4355 1.7547 36 1 -3.3374 -1.4252 4.5421 37 1 -3.7869 -0.4582 3.1257 38 1 -1.4392 -0.1433 3.3029 39 1 -1.5923 -1.4000 2.0492 40 1 -1.4856 -2.3035 4.8787 41 1 0.0096 -1.6443 4.1949 42 1 -0.6756 -2.6407 0.7420 43 1 0.1034 -1.3348 1.6723 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069873525.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:04:34 Heat of formation + Delta-G solvation = 19.527637 kcal Electronic energy + Delta-G solvation = -20768.326047 eV Core-core repulsion = 18041.558525 eV Total energy + Delta-G solvation = -2726.767522 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.51615 -36.86898 -33.98552 -32.70577 -31.67907 -30.00085 -28.77876 -25.74892 -25.17046 -24.49618 -22.09066 -21.39695 -20.19921 -19.47378 -18.33440 -16.68579 -15.81749 -15.33161 -14.74740 -14.39152 -13.99431 -13.69670 -13.48015 -13.09482 -13.00845 -12.65370 -12.44144 -12.27536 -12.02737 -11.72023 -11.37347 -11.01997 -10.94535 -10.77096 -10.69293 -10.43251 -10.31056 -10.25144 -10.10888 -10.00519 -9.89959 -9.74303 -9.61334 -9.14638 -8.45572 -7.62789 -6.56818 -5.77318 -3.20329 3.35831 3.44271 3.46359 4.40818 4.50970 5.05249 5.08604 5.28041 5.36510 5.51609 5.54466 5.62446 5.71953 5.76289 5.79783 5.87023 5.98323 6.03610 6.06638 6.18000 6.29986 6.31039 6.36047 6.42091 6.43969 6.51374 6.52601 6.56506 6.62730 6.64991 6.72232 6.81737 6.92469 7.03845 7.06284 7.30570 7.56761 7.76686 7.80668 7.83066 8.46205 9.22573 9.85921 10.43210 11.29265 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018995 B = 0.009441 C = 0.006996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.696069 B = 2965.010857 C = 4001.147880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.002 3.998 3 Si 0.898 3.102 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.250 4.250 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.143 3.857 11 C -0.133 4.133 12 C -0.101 4.101 13 C 0.059 3.941 14 H 0.072 0.928 15 N -0.544 5.544 16 C 0.054 3.946 17 C -0.117 4.117 18 C -0.119 4.119 19 C -0.113 4.113 20 C -0.163 4.163 21 C 0.067 3.933 22 C 0.143 3.857 23 H 0.252 0.748 24 H 0.014 0.986 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.061 0.939 39 H 0.102 0.898 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.017 0.983 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.630 -6.621 6.555 10.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.728 3.272 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.380 4.380 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.017 3.983 11 C -0.173 4.173 12 C -0.139 4.139 13 C -0.051 4.051 14 H 0.090 0.910 15 N -0.268 5.268 16 C -0.073 4.073 17 C -0.155 4.155 18 C -0.157 4.157 19 C -0.151 4.151 20 C -0.202 4.202 21 C -0.061 4.061 22 C 0.016 3.984 23 H 0.062 0.938 24 H 0.032 0.968 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.120 0.880 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.035 0.965 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.641 -6.789 6.899 10.734 hybrid contribution 0.178 1.532 -0.672 1.682 sum -4.463 -5.257 6.227 9.292 Atomic orbital electron populations 1.70031 1.05127 1.25192 1.54175 1.25011 0.95298 0.98237 1.01059 0.86279 0.79478 0.84151 0.77251 1.20274 1.21781 1.21598 1.19239 0.92599 0.84831 1.41297 0.91719 1.44045 1.36061 1.01607 1.49745 1.20935 0.97405 0.87033 0.92952 1.22006 0.97660 0.98827 0.98814 1.21459 0.97661 0.96672 0.98120 1.22475 0.91686 0.96425 0.94464 0.90962 1.62193 1.04797 1.26347 1.33468 1.21801 0.89629 0.99371 0.96502 1.21403 0.96005 0.97043 1.01027 1.20597 0.98809 0.95124 1.01140 1.20512 0.96957 0.97728 0.99874 1.22289 0.94095 0.99939 1.03863 1.21741 0.99479 0.88278 0.96589 1.21688 0.88795 0.99231 0.88656 0.93824 0.96762 0.92957 0.93117 0.92427 0.93047 0.92896 0.93528 0.91846 0.91253 0.91924 0.92982 0.92046 0.92968 0.92883 0.92036 0.88017 0.92076 0.91980 0.96493 0.88328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.54 11.21 55.49 0.62 -24.92 16 2 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 3 Si 0.90 21.69 29.59 -169.99 -5.03 16.67 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.25 -6.88 9.58 -15.06 -0.14 -7.02 16 8 H 0.07 1.76 7.89 -52.48 -0.41 1.35 16 9 N -0.59 -14.92 2.99 -172.31 -0.52 -15.44 16 10 C 0.14 3.07 6.52 -3.71 -0.02 3.05 16 11 C -0.13 -2.40 6.08 -26.61 -0.16 -2.56 16 12 C -0.10 -1.80 4.78 -26.69 -0.13 -1.93 16 13 C 0.06 1.16 2.32 -67.59 -0.16 1.01 16 14 H 0.07 1.53 7.93 -51.93 -0.41 1.11 16 15 N -0.54 -9.49 4.73 -227.77 -1.08 -10.56 16 16 C 0.05 0.88 4.07 -4.49 -0.02 0.86 16 17 C -0.12 -1.60 5.63 -27.32 -0.15 -1.75 16 18 C -0.12 -1.66 5.30 -29.42 -0.16 -1.82 16 19 C -0.11 -1.66 5.30 -29.41 -0.16 -1.82 16 20 C -0.16 -2.88 4.59 -27.32 -0.13 -3.01 16 21 C 0.07 1.13 4.92 -4.50 -0.02 1.11 16 22 C 0.14 3.35 2.89 -3.71 -0.01 3.34 16 23 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 24 H 0.01 0.31 8.14 -51.92 -0.42 -0.11 16 25 H 0.05 1.10 7.93 -51.93 -0.41 0.68 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.94 6.66 -51.93 -0.35 0.60 16 30 H 0.05 0.87 4.39 -51.93 -0.23 0.64 16 31 H 0.06 0.99 6.90 -51.93 -0.36 0.63 16 32 H 0.07 0.94 7.08 -51.93 -0.37 0.58 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.95 7.52 -51.93 -0.39 0.56 16 36 H 0.05 0.70 7.52 -51.93 -0.39 0.31 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.10 2.14 4.14 -51.93 -0.21 1.93 16 40 H 0.06 0.93 6.59 -51.93 -0.34 0.59 16 41 H 0.06 1.10 7.72 -51.93 -0.40 0.70 16 42 H 0.02 0.43 5.71 -51.93 -0.30 0.14 16 43 H 0.10 2.52 3.86 -51.93 -0.20 2.32 16 LS Contribution 302.00 15.07 4.55 4.55 Total: -1.00 -28.05 302.00 -10.08 -38.13 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -7.29 Total: 2.13 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -1.34 Total: -10.56 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.97 Total: -50.92 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.05 -10.08 -38.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069873525.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.660 kcal (2) G-P(sol) polarization free energy of solvation -28.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds