Wall clock time and date at job start Sun Mar 29 2020 23:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 113.99692 * 2 1 4 4 C 1.53099 * 109.52624 * 269.67929 * 3 2 1 5 5 C 1.53038 * 109.28740 * 182.43859 * 4 3 2 6 6 N 1.46843 * 109.51815 * 59.18281 * 5 4 3 7 7 C 1.46900 * 110.99969 * 174.15987 * 6 5 4 8 8 C 1.53004 * 109.47015 * 176.32401 * 7 6 5 9 9 H 1.09004 * 109.47182 * 301.94275 * 8 7 6 10 10 C 1.47204 * 109.46664 * 61.94275 * 8 7 6 11 11 N 6.78730 * 158.11936 * 336.67442 * 2 1 3 12 12 C 1.53002 * 109.47256 * 181.93789 * 8 7 6 13 13 C 1.50693 * 109.47089 * 174.99919 * 12 8 7 14 14 H 1.07997 * 120.00257 * 0.02562 * 13 12 8 15 15 C 1.37886 * 119.99893 * 180.02562 * 13 12 8 16 16 N 1.31516 * 119.99670 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00032 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.46886 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47251 * 119.99769 * 17 15 13 20 20 H 1.48496 * 109.47278 * 240.00162 * 17 15 13 21 21 C 1.46838 * 111.19726 * 298.26260 * 6 5 4 22 22 C 1.53039 * 109.52740 * 61.74131 * 21 6 5 23 23 H 1.08995 * 109.47310 * 299.99835 * 1 2 3 24 24 H 1.08998 * 109.47173 * 60.00230 * 1 2 3 25 25 H 1.09000 * 109.46847 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.57799 * 29.84109 * 3 2 1 27 27 H 1.08995 * 109.48844 * 62.49746 * 4 3 2 28 28 H 1.09001 * 109.49972 * 302.38329 * 4 3 2 29 29 H 1.08992 * 109.46619 * 299.16706 * 5 4 3 30 30 H 1.09007 * 109.45789 * 179.19416 * 5 4 3 31 31 H 1.08996 * 109.47432 * 296.32519 * 7 6 5 32 32 H 1.09006 * 109.47192 * 56.33013 * 7 6 5 33 33 H 1.08998 * 109.47645 * 295.00820 * 12 8 7 34 34 H 1.09011 * 109.46429 * 55.00241 * 12 8 7 35 35 H 0.96998 * 119.99467 * 179.97438 * 16 15 13 36 36 H 1.09007 * 109.46700 * 181.76104 * 21 6 5 37 37 H 1.08999 * 109.46365 * 301.73297 * 21 6 5 38 38 H 1.09001 * 109.50002 * 60.76452 * 22 21 6 39 39 H 1.09001 * 109.50435 * 180.84291 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 2.2257 1.7696 -1.4429 5 6 2.9037 3.1416 -1.4366 6 7 4.1908 3.0496 -0.7359 7 6 4.9330 4.3138 -0.8299 8 6 6.2228 4.2099 -0.0135 9 1 5.9790 3.9752 1.0227 10 6 7.0720 3.1447 -0.5712 11 7 7.7274 2.3227 -1.0016 12 6 6.9721 5.5426 -0.0719 13 6 8.1778 5.4809 0.8300 14 1 8.3889 4.5811 1.3886 15 6 9.0117 6.5734 0.9419 16 7 8.7544 7.6693 0.2620 17 14 10.5067 6.4967 2.0593 18 1 10.5724 5.1620 2.7071 19 1 11.7364 6.7179 1.2567 20 1 10.4000 7.5487 3.1018 21 6 4.0052 2.6512 0.6652 22 6 3.3601 1.2646 0.7216 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.3449 2.0014 0.5110 27 1 1.2632 1.8416 -1.9493 28 1 2.8596 1.0528 -1.9649 29 1 2.2631 3.8610 -0.9266 30 1 3.0714 3.4685 -2.4629 31 1 5.1783 4.5144 -1.8728 32 1 4.3195 5.1253 -0.4383 33 1 7.2935 5.7343 -1.0956 34 1 6.3123 6.3452 0.2580 35 1 9.3407 8.4380 0.3411 36 1 4.9731 2.6220 1.1658 37 1 3.3594 3.3727 1.1655 38 1 4.0118 0.5399 0.2336 39 1 3.2088 0.9756 1.7617 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078289174.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:36:48 Heat of formation + Delta-G solvation = -30.923860 kcal Electronic energy + Delta-G solvation = -18635.444603 eV Core-core repulsion = 15770.656246 eV Total energy + Delta-G solvation = -2864.788358 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.61064 -37.73464 -35.95778 -33.86629 -32.69999 -31.16262 -30.60143 -27.27714 -26.37902 -24.18102 -23.23811 -22.06433 -21.47017 -19.96152 -16.96075 -16.72990 -16.39619 -15.89943 -15.29361 -15.04458 -14.76322 -14.50797 -14.25041 -13.69977 -13.16923 -12.92145 -12.80082 -12.47853 -12.18722 -12.09131 -11.92159 -11.54600 -11.36046 -11.22072 -11.12403 -11.04789 -10.91099 -10.69020 -10.58252 -10.49904 -10.09372 -9.62205 -9.52660 -9.20825 -8.46928 -8.19131 -6.10664 -4.13717 3.27980 3.36391 3.41001 3.57137 3.73987 3.82433 3.97735 4.40675 4.68333 4.70307 4.90029 4.95699 5.07536 5.12433 5.18188 5.27647 5.29927 5.31788 5.43400 5.48869 5.52625 5.67060 5.71163 5.78860 5.90916 5.93495 6.03953 6.11920 6.25878 6.38336 6.48867 7.05894 7.16789 7.18780 7.41359 7.51737 7.84819 8.22100 8.59006 8.91260 9.51901 11.00291 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.041208 B = 0.004188 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.310783 B = 6683.896266 C = 6804.343520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.089 3.911 4 C -0.137 4.137 5 C 0.060 3.940 6 N -0.542 5.542 7 C 0.063 3.937 8 C 0.005 3.995 9 H 0.102 0.898 10 C 0.254 3.746 11 N -0.475 5.475 12 C 0.031 3.969 13 C -0.526 4.526 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.891 5.891 17 Si 0.891 3.109 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.050 3.950 22 C -0.113 4.113 23 H 0.039 0.961 24 H 0.039 0.961 25 H 0.083 0.917 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.034 0.966 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.053 0.947 33 H 0.027 0.973 34 H 0.037 0.963 35 H 0.262 0.738 36 H 0.090 0.910 37 H 0.037 0.963 38 H 0.079 0.921 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.679 -8.251 -0.036 19.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.031 3.969 4 C -0.175 4.175 5 C -0.068 4.068 6 N -0.267 5.267 7 C -0.065 4.065 8 C -0.017 4.017 9 H 0.119 0.881 10 C -0.063 4.063 11 N -0.152 5.152 12 C -0.007 4.007 13 C -0.564 4.564 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.719 3.281 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.078 4.078 22 C -0.151 4.151 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.101 0.899 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.052 0.948 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.045 0.955 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.056 0.944 38 H 0.098 0.902 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.241 -9.847 -0.949 19.016 hybrid contribution -0.080 1.295 1.104 1.704 sum -16.320 -8.551 0.155 18.426 Atomic orbital electron populations 1.22754 0.81536 1.02480 0.99768 1.87933 1.19251 1.28146 1.95068 1.22235 0.94891 0.84065 0.95716 1.22068 1.00498 0.97708 0.97203 1.21991 0.89538 0.95799 0.99498 1.61996 1.18666 1.32194 1.13820 1.22239 0.93391 0.89346 1.01530 1.19351 0.90873 0.93183 0.98305 0.88081 1.28799 0.92384 0.92585 0.92556 1.80984 1.11325 1.12712 1.10198 1.19176 0.94982 0.87995 0.98580 1.21177 1.09297 0.99489 1.26416 0.92441 1.24958 0.97867 0.95383 0.95780 1.69949 1.38248 1.03530 1.41288 0.86537 0.82836 0.78159 0.80569 1.19643 1.20955 1.20862 1.22194 1.01159 0.95063 0.89384 1.21651 0.94909 0.98050 1.00449 0.94222 0.94212 0.89869 0.92522 0.91764 0.90179 0.94813 0.90313 0.89937 0.92925 0.95492 0.94460 0.92849 0.89150 0.94440 0.90211 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.35 16 2 O -0.39 -4.46 10.35 -35.23 -0.36 -4.83 16 3 C 0.09 0.96 2.68 -26.62 -0.07 0.89 16 4 C -0.14 -1.46 5.72 -26.66 -0.15 -1.62 16 5 C 0.06 0.67 5.46 -3.84 -0.02 0.65 16 6 N -0.54 -7.37 4.38 -234.67 -1.03 -8.40 16 7 C 0.06 0.94 4.52 -3.82 -0.02 0.92 16 8 C 0.00 0.09 1.76 -93.40 -0.16 -0.08 16 9 H 0.10 1.72 6.07 -51.93 -0.32 1.41 16 10 C 0.25 5.32 13.46 -20.76 -0.28 5.04 16 11 N -0.48 -10.87 18.54 42.15 0.78 -10.09 16 12 C 0.03 0.72 4.42 -27.89 -0.12 0.60 16 13 C -0.53 -13.93 8.60 -34.44 -0.30 -14.23 16 14 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -25.42 13.29 55.43 0.74 -24.69 16 17 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C 0.05 0.62 5.03 -3.84 -0.02 0.61 16 22 C -0.11 -1.33 5.75 -26.65 -0.15 -1.49 16 23 H 0.04 0.28 8.09 -51.93 -0.42 -0.14 16 24 H 0.04 0.28 7.96 -51.93 -0.41 -0.13 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.56 7.79 -51.93 -0.40 0.15 16 27 H 0.06 0.59 7.96 -51.93 -0.41 0.17 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.04 0.86 8.14 -51.92 -0.42 0.44 16 35 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.09 1.22 5.71 -51.93 -0.30 0.93 16 37 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 320.10 15.07 4.82 4.82 Total: -1.00 -30.38 320.10 -6.82 -37.20 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -6.45 Total: -4.50 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -0.30 Total: -5.75 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.49 Total: -43.17 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: -0.36 Total: -4.83 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.38 -6.82 -37.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078289174.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.274 kcal (2) G-P(sol) polarization free energy of solvation -30.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds