Wall clock time and date at job start Sun Mar 29 2020 23:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46902 * 111.00388 * 2 1 4 4 C 1.53002 * 109.46782 * 293.96059 * 3 2 1 5 5 H 1.08993 * 109.47389 * 54.99777 * 4 3 2 6 6 C 1.47195 * 109.47254 * 294.99261 * 4 3 2 7 7 N 3.66502 * 112.02493 * 284.54484 * 2 1 3 8 8 C 1.53008 * 109.46814 * 174.99661 * 4 3 2 9 9 C 1.50696 * 109.47272 * 184.99824 * 8 4 3 10 10 H 1.08007 * 119.99914 * 0.02562 * 9 8 4 11 11 C 1.37875 * 120.00170 * 180.02562 * 9 8 4 12 12 N 1.31511 * 119.99952 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00080 * 180.02562 * 11 9 8 14 14 H 1.48490 * 109.47436 * 89.99777 * 13 11 9 15 15 H 1.48502 * 109.47019 * 210.00028 * 13 11 9 16 16 H 1.48500 * 109.46799 * 329.99874 * 13 11 9 17 17 C 1.46900 * 111.00391 * 123.95829 * 2 1 3 18 18 C 1.53001 * 109.47186 * 160.29517 * 17 2 1 19 19 H 1.08996 * 109.47068 * 56.98372 * 18 17 2 20 20 O 1.42891 * 109.47148 * 296.97943 * 18 17 2 21 21 C 1.53008 * 109.46918 * 176.97959 * 18 17 2 22 22 C 1.52991 * 117.49891 * 248.74916 * 21 18 17 23 23 C 1.52992 * 117.49785 * 180.08593 * 21 18 17 24 24 H 1.09003 * 109.47669 * 65.73590 * 1 2 3 25 25 H 1.09006 * 109.47559 * 185.73869 * 1 2 3 26 26 H 1.09009 * 109.47120 * 305.73940 * 1 2 3 27 27 H 1.08991 * 109.47489 * 173.95773 * 3 2 1 28 28 H 1.08997 * 109.46762 * 53.95652 * 3 2 1 29 29 H 1.08996 * 109.47113 * 304.99958 * 8 4 3 30 30 H 1.09006 * 109.46814 * 64.99929 * 8 4 3 31 31 H 0.96996 * 120.00113 * 180.02562 * 12 11 9 32 32 H 1.08998 * 109.46882 * 280.29772 * 17 2 1 33 33 H 1.09000 * 109.47043 * 40.29342 * 17 2 1 34 34 H 0.96697 * 114.00786 * 300.00235 * 20 18 17 35 35 H 1.09001 * 115.54797 * 34.41644 * 21 18 17 36 36 H 1.09001 * 117.50185 * 359.97438 * 22 21 18 37 37 H 1.09001 * 117.49894 * 145.02140 * 22 21 18 38 38 H 1.09000 * 117.50115 * 214.98057 * 23 21 18 39 39 H 1.09002 * 117.50188 * 359.97438 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6313 2.0574 -1.3182 5 1 0.5531 2.0058 -1.4690 6 6 2.3154 1.3778 -2.4304 7 7 2.8433 0.8533 -3.2887 8 6 2.0699 3.5225 -1.2688 9 6 1.6030 4.2289 -2.5154 10 1 1.0485 3.6873 -3.2675 11 6 1.8836 5.5667 -2.6958 12 7 2.5592 6.2261 -1.7802 13 14 1.3042 6.4426 -4.2406 14 1 -0.0474 7.0124 -4.0093 15 1 2.2519 7.5360 -4.5746 16 1 1.2477 5.4755 -5.3662 17 6 1.9955 -0.7660 1.1375 18 6 3.4461 -1.1635 0.8570 19 1 4.0366 -0.2686 0.6610 20 8 3.4923 -2.0239 -0.2829 21 6 4.0183 -1.8960 2.0724 22 6 5.1066 -1.1842 2.8783 23 6 5.4683 -2.3767 1.9893 24 1 -0.3634 0.4223 -0.9369 25 1 -0.3634 -1.0225 0.1028 26 1 -0.3634 0.6003 0.8342 27 1 3.0797 1.3444 0.1082 28 1 1.5612 1.9273 0.8309 29 1 1.6330 4.0032 -0.3935 30 1 3.1570 3.5744 -1.2073 31 1 2.7563 7.1674 -1.9069 32 1 1.9542 -0.1536 2.0382 33 1 1.3939 -1.6637 1.2806 34 1 2.9873 -2.8420 -0.1791 35 1 3.3121 -2.5192 2.6211 36 1 5.4154 -0.1942 2.5425 37 1 5.1168 -1.3395 3.9571 38 1 5.7164 -3.3159 2.4836 39 1 6.0147 -2.1715 1.0687 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079785385.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:27:02 Heat of formation + Delta-G solvation = -6.611057 kcal Electronic energy + Delta-G solvation = -18567.691266 eV Core-core repulsion = 15703.957191 eV Total energy + Delta-G solvation = -2863.734076 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.10231 -37.51221 -35.68421 -35.05575 -33.50377 -31.65813 -29.36122 -27.30581 -25.32553 -23.64513 -22.50789 -21.67490 -21.06367 -20.85179 -16.77398 -16.71506 -16.40245 -16.03943 -15.33483 -15.10613 -14.60125 -14.14087 -14.08168 -13.63268 -13.07839 -12.82821 -12.67070 -12.30790 -11.86224 -11.77865 -11.69150 -11.67964 -11.41705 -11.12243 -11.02030 -10.97225 -10.67887 -10.60933 -10.48861 -10.34426 -10.11771 -9.81428 -9.49181 -9.19166 -8.43459 -8.12795 -6.07396 -4.10206 3.30814 3.37734 3.42990 3.52574 3.82885 3.91876 3.98595 4.42275 4.49460 4.58720 4.73148 4.89384 4.95611 5.03546 5.13340 5.24691 5.30926 5.38958 5.48476 5.53618 5.59059 5.67619 5.72884 5.83242 5.84999 5.96488 6.00075 6.06889 6.14668 6.42878 6.53677 7.14975 7.19255 7.44825 7.56111 7.79856 7.88201 8.26207 8.71222 8.94707 9.55132 11.03634 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.028944 B = 0.004587 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.168058 B = 6102.927278 C = 6287.661520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.537 5.537 3 C 0.061 3.939 4 C 0.012 3.988 5 H 0.099 0.901 6 C 0.254 3.746 7 N -0.475 5.475 8 C 0.031 3.969 9 C -0.525 4.525 10 H 0.057 0.943 11 C 0.062 3.938 12 N -0.893 5.893 13 Si 0.891 3.109 14 H -0.279 1.279 15 H -0.286 1.286 16 H -0.273 1.273 17 C 0.028 3.972 18 C 0.141 3.859 19 H 0.098 0.902 20 O -0.540 6.540 21 C -0.193 4.193 22 C -0.175 4.175 23 C -0.166 4.166 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.027 0.973 27 H 0.077 0.923 28 H 0.052 0.948 29 H 0.036 0.964 30 H 0.025 0.975 31 H 0.262 0.738 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.367 0.633 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.192 -14.680 12.029 19.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.260 5.260 3 C -0.067 4.067 4 C -0.010 4.010 5 H 0.117 0.883 6 C -0.063 4.063 7 N -0.151 5.151 8 C -0.008 4.008 9 C -0.563 4.563 10 H 0.075 0.925 11 C -0.139 4.139 12 N -0.531 5.531 13 Si 0.719 3.281 14 H -0.205 1.205 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.100 4.100 18 C 0.081 3.919 19 H 0.115 0.885 20 O -0.343 6.343 21 C -0.212 4.212 22 C -0.212 4.212 23 C -0.203 4.203 24 H 0.093 0.907 25 H 0.080 0.920 26 H 0.046 0.954 27 H 0.095 0.905 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.212 0.788 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.204 -15.043 10.101 18.121 hybrid contribution -1.165 0.805 0.608 1.541 sum -0.961 -14.238 10.708 17.841 Atomic orbital electron populations 1.22450 0.87299 1.01164 1.01630 1.61922 1.07678 1.14292 1.42139 1.22309 1.00703 0.86950 0.96757 1.19197 0.99156 0.96633 0.86043 0.88339 1.28762 0.92887 0.91083 0.93591 1.80974 1.10363 1.12044 1.11758 1.19173 0.97683 0.85471 0.98423 1.21145 1.35857 0.94812 1.04454 0.92495 1.24947 0.94929 0.97564 0.96506 1.69937 1.39482 1.09581 1.34134 0.86595 0.78528 0.79403 0.83601 1.20507 1.21153 1.19807 1.22776 0.96458 0.98391 0.92396 1.21460 0.94504 0.92465 0.83443 0.88450 1.86703 1.74745 1.34040 1.38805 1.23079 0.92629 1.04656 1.00886 1.22973 1.02745 0.97601 0.97855 1.22849 0.97125 0.98275 1.02088 0.90714 0.91987 0.95404 0.90499 0.92952 0.94581 0.95618 0.92834 0.93655 0.90889 0.78759 0.87895 0.88423 0.88800 0.88997 0.88283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.23 60.06 0.55 0.82 16 2 N -0.54 -7.32 4.31 -242.92 -1.05 -8.37 16 3 C 0.06 0.95 4.15 -3.82 -0.02 0.93 16 4 C 0.01 0.22 2.13 -93.40 -0.20 0.02 16 5 H 0.10 1.77 6.46 -51.93 -0.34 1.43 16 6 C 0.25 5.58 13.67 -20.76 -0.28 5.30 16 7 N -0.47 -11.37 18.54 42.15 0.78 -10.59 16 8 C 0.03 0.73 4.42 -27.88 -0.12 0.61 16 9 C -0.52 -14.18 8.60 -34.44 -0.30 -14.48 16 10 H 0.06 1.54 7.59 -52.48 -0.40 1.14 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.89 -25.76 13.29 55.43 0.74 -25.03 16 13 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 17 C 0.03 0.31 4.63 -3.82 -0.02 0.29 16 18 C 0.14 1.65 3.24 -26.73 -0.09 1.56 16 19 H 0.10 1.34 6.47 -51.93 -0.34 1.00 16 20 O -0.54 -7.27 13.17 -35.23 -0.46 -7.73 16 21 C -0.19 -1.79 5.36 -90.62 -0.49 -2.28 16 22 C -0.17 -1.57 10.18 -26.70 -0.27 -1.84 16 23 C -0.17 -1.54 10.16 -26.70 -0.27 -1.81 16 24 H 0.07 0.95 6.65 -51.93 -0.35 0.60 16 25 H 0.06 0.62 7.84 -51.93 -0.41 0.22 16 26 H 0.03 0.30 8.07 -51.92 -0.42 -0.12 16 27 H 0.08 1.23 6.59 -51.93 -0.34 0.88 16 28 H 0.05 0.74 8.06 -51.93 -0.42 0.33 16 29 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.05 0.47 8.00 -51.93 -0.42 0.05 16 33 H 0.07 0.67 7.74 -51.93 -0.40 0.27 16 34 H 0.37 3.56 9.05 45.56 0.41 3.97 16 35 H 0.10 0.82 8.11 -51.93 -0.42 0.39 16 36 H 0.10 0.93 8.05 -51.93 -0.42 0.51 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 329.07 15.07 4.96 4.96 Total: -1.00 -31.78 329.07 -7.14 -38.93 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -5.49 Total: 0.57 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -1.59 Total: -9.23 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: 0.47 Total: -43.98 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.46 Total: -7.73 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.78 -7.14 -38.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079785385.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.314 kcal (2) G-P(sol) polarization free energy of solvation -31.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds