Wall clock time and date at job start Sun Mar 29 2020 23:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36936 * 120.00054 * 2 1 4 4 H 1.07997 * 120.00490 * 202.48402 * 3 2 1 5 5 C 1.38820 * 119.99775 * 22.48193 * 3 2 1 6 6 N 1.31618 * 119.99814 * 11.33650 * 5 3 2 7 7 Si 1.86800 * 120.00034 * 191.33484 * 5 3 2 8 8 H 1.48495 * 109.47137 * 90.00084 * 7 5 3 9 9 H 1.48495 * 109.46945 * 209.99926 * 7 5 3 10 10 H 1.48502 * 109.46793 * 330.00023 * 7 5 3 11 11 C 1.46500 * 120.00427 * 180.02562 * 2 1 3 12 12 N 1.46497 * 109.47262 * 270.00100 * 11 2 1 13 13 C 1.47039 * 124.35203 * 89.99312 * 12 11 2 14 14 C 1.53338 * 105.23878 * 195.95422 * 13 12 11 15 15 C 1.53142 * 111.46399 * 216.32955 * 14 13 12 16 16 C 1.55153 * 103.89365 * 214.23887 * 15 14 13 17 17 C 1.54996 * 102.90566 * 36.94843 * 16 15 14 18 18 C 1.52750 * 111.68181 * 95.66087 * 14 13 12 19 19 C 1.53510 * 102.99808 * 335.81074 * 14 13 12 20 20 C 1.34559 * 124.34923 * 269.70152 * 12 11 2 21 21 O 1.21284 * 124.94188 * 359.63589 * 20 12 11 22 22 H 1.08994 * 109.46935 * 274.11773 * 1 2 3 23 23 H 1.08997 * 109.47335 * 34.12181 * 1 2 3 24 24 H 1.09004 * 109.46527 * 154.12291 * 1 2 3 25 25 H 0.97000 * 119.99816 * 180.02562 * 6 5 3 26 26 H 1.08996 * 109.47362 * 149.99865 * 11 2 1 27 27 H 1.09006 * 109.46980 * 29.99848 * 11 2 1 28 28 H 1.09002 * 110.29242 * 314.89609 * 13 12 11 29 29 H 1.09002 * 110.29243 * 76.92046 * 13 12 11 30 30 H 1.09003 * 110.54164 * 332.83966 * 15 14 13 31 31 H 1.09002 * 110.54500 * 95.63519 * 15 14 13 32 32 H 1.08999 * 110.72976 * 278.59822 * 16 15 14 33 33 H 1.09007 * 110.73127 * 155.30305 * 16 15 14 34 34 H 1.08997 * 110.48111 * 203.99148 * 17 16 15 35 35 H 1.09003 * 110.47363 * 81.36336 * 17 16 15 36 36 H 1.08996 * 110.12709 * 241.59610 * 18 14 13 37 37 H 1.08995 * 110.12175 * 3.26790 * 18 14 13 38 38 H 1.08998 * 110.52901 * 142.23742 * 19 14 13 39 39 H 1.08998 * 110.53478 * 264.86752 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1681 1.2215 -0.3577 5 6 1.5347 2.3424 0.4597 6 7 0.3862 2.2677 1.0984 7 14 2.3370 4.0046 0.1720 8 1 1.8658 4.5647 -1.1200 9 1 1.9706 4.9287 1.2751 10 1 3.8126 3.8416 0.1322 11 6 2.1976 -1.2687 -0.0006 12 7 2.4418 -1.6922 1.3804 13 6 1.5287 -2.5390 2.1623 14 6 1.9777 -2.3774 3.6196 15 6 1.8393 -3.6893 4.3974 16 6 1.4515 -3.2344 5.8291 17 6 0.5239 -2.0205 5.5674 18 6 1.1583 -1.3136 4.3478 19 6 3.4490 -1.9611 3.4834 20 6 3.5331 -1.3609 2.0945 21 8 4.4498 -0.6796 1.6864 22 1 -0.3633 0.0738 1.0250 23 1 -0.3634 0.8507 -0.5764 24 1 -0.3632 -0.9247 -0.4485 25 1 -0.0437 3.0759 1.4193 26 1 3.1499 -1.1381 -0.5143 27 1 1.6085 -2.0282 -0.5147 28 1 0.5007 -2.1968 2.0433 29 1 1.6185 -3.5797 1.8509 30 1 1.0523 -4.3082 3.9664 31 1 2.7868 -4.2279 4.4107 32 1 2.3353 -2.9305 6.3900 33 1 0.9139 -4.0249 6.3528 34 1 0.5133 -1.3554 6.4308 35 1 -0.4858 -2.3563 5.3309 36 1 1.8068 -0.5029 4.6799 37 1 0.3790 -0.9263 3.6916 38 1 3.7080 -1.2197 4.2392 39 1 4.1013 -2.8307 3.5630 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083108954.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:35:12 Heat of formation + Delta-G solvation = -16.987839 kcal Electronic energy + Delta-G solvation = -19889.678376 eV Core-core repulsion = 17025.494329 eV Total energy + Delta-G solvation = -2864.184047 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.29257 -37.45928 -35.64582 -34.26728 -31.54940 -29.98108 -28.65727 -27.38518 -26.11774 -25.45467 -23.37962 -21.32786 -20.68343 -18.91183 -18.75488 -16.78096 -15.90778 -15.61415 -15.03568 -14.99376 -14.53885 -13.99558 -13.73933 -13.34785 -13.24245 -12.83283 -12.53928 -12.23281 -11.97302 -11.65981 -11.25095 -11.05585 -10.93242 -10.88006 -10.87412 -10.69489 -10.49669 -10.41066 -10.36713 -10.28113 -9.96627 -9.88055 -8.96351 -8.52836 -7.92196 -6.90172 -5.72244 -3.18920 3.39046 3.46721 3.48625 3.54070 3.99429 4.55270 4.59455 4.62102 4.65912 5.14049 5.25186 5.41400 5.43429 5.50953 5.56406 5.61950 5.73133 5.85668 5.89516 5.92312 5.94698 6.01994 6.06918 6.13536 6.14461 6.34257 6.36935 6.49083 6.52553 6.62581 6.66952 7.27456 7.47492 7.69272 7.90118 8.06387 8.39395 9.09883 9.24271 9.82866 10.29507 11.32538 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.024395 B = 0.007262 C = 0.006939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.502962 B = 3854.912946 C = 4034.482946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.584 5.584 3 C -0.248 4.248 4 H 0.074 0.926 5 C 0.005 3.995 6 N -0.908 5.908 7 Si 0.906 3.094 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.277 1.277 11 C 0.358 3.642 12 N -0.618 5.618 13 C 0.115 3.885 14 C -0.073 4.073 15 C -0.107 4.107 16 C -0.124 4.124 17 C -0.123 4.123 18 C -0.108 4.108 19 C -0.145 4.145 20 C 0.518 3.482 21 O -0.539 6.539 22 H 0.030 0.970 23 H 0.048 0.952 24 H -0.003 1.003 25 H 0.251 0.749 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.998 -13.030 7.030 14.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.306 5.306 3 C -0.378 4.378 4 H 0.091 0.909 5 C -0.193 4.193 6 N -0.553 5.553 7 Si 0.736 3.264 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.203 1.203 11 C 0.150 3.850 12 N -0.358 5.358 13 C -0.010 4.010 14 C -0.073 4.073 15 C -0.145 4.145 16 C -0.161 4.161 17 C -0.161 4.161 18 C -0.145 4.145 19 C -0.186 4.186 20 C 0.304 3.696 21 O -0.416 6.416 22 H 0.048 0.952 23 H 0.067 0.933 24 H 0.015 0.985 25 H 0.061 0.939 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.110 0.890 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.670 -12.461 6.708 14.168 hybrid contribution 0.211 1.034 0.136 1.064 sum -0.459 -11.427 6.844 13.328 Atomic orbital electron populations 1.20870 0.82437 0.95740 0.99417 1.44780 1.02354 1.01493 1.82017 1.19308 0.98111 0.84843 1.35551 0.90860 1.25047 0.97589 0.98700 0.97978 1.70062 1.17939 1.27074 1.40221 0.86219 0.79247 0.83797 0.77180 1.21463 1.21782 1.20258 1.21179 0.96192 0.86855 0.80735 1.50534 1.19931 1.49474 1.15878 1.22028 0.95304 0.94136 0.89533 1.21305 0.94906 0.96058 0.95044 1.22293 1.01470 0.95662 0.95060 1.22546 0.99368 0.97633 0.96571 1.22443 0.98794 0.96819 0.98036 1.22103 0.99414 0.96669 0.96346 1.22505 0.96441 1.02080 0.97559 1.20803 0.82250 0.79444 0.87127 1.90661 1.36731 1.38639 1.75536 0.95195 0.93276 0.98453 0.93856 0.91075 0.92303 0.90910 0.92450 0.91191 0.91423 0.91633 0.91908 0.91973 0.91777 0.91531 0.90543 0.89025 0.89045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.85 9.01 59.85 0.54 4.39 16 2 N -0.58 -14.83 3.16 -184.86 -0.58 -15.41 16 3 C -0.25 -7.12 9.67 -15.06 -0.15 -7.27 16 4 H 0.07 2.18 7.84 -52.49 -0.41 1.77 16 5 C 0.01 0.15 5.13 -17.43 -0.09 0.06 16 6 N -0.91 -26.60 10.59 55.49 0.59 -26.01 16 7 Si 0.91 23.04 29.57 -169.99 -5.03 18.01 16 8 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 9 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 10 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 11 C 0.36 7.64 6.51 -63.75 -0.41 7.23 16 12 N -0.62 -12.27 3.18 -176.46 -0.56 -12.83 16 13 C 0.11 1.78 6.37 -3.57 -0.02 1.76 16 14 C -0.07 -1.02 0.83 -154.12 -0.13 -1.14 16 15 C -0.11 -1.13 5.87 -25.52 -0.15 -1.28 16 16 C -0.12 -1.24 6.92 -24.54 -0.17 -1.41 16 17 C -0.12 -1.45 6.86 -24.85 -0.17 -1.62 16 18 C -0.11 -1.64 6.16 -26.03 -0.16 -1.80 16 19 C -0.15 -2.31 5.98 -27.20 -0.16 -2.47 16 20 C 0.52 11.01 8.04 -10.67 -0.09 10.93 16 21 O -0.54 -13.88 17.59 5.55 0.10 -13.79 16 22 H 0.03 0.77 7.42 -51.93 -0.39 0.39 16 23 H 0.05 1.28 7.19 -51.93 -0.37 0.91 16 24 H 0.00 -0.06 7.85 -51.93 -0.41 -0.47 16 25 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.07 1.60 7.81 -51.93 -0.41 1.19 16 27 H 0.06 1.07 7.86 -51.93 -0.41 0.66 16 28 H 0.07 1.20 7.45 -51.93 -0.39 0.81 16 29 H 0.06 0.75 7.85 -51.93 -0.41 0.34 16 30 H 0.07 0.67 7.88 -51.93 -0.41 0.27 16 31 H 0.07 0.65 7.42 -51.93 -0.39 0.27 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 1.12 7.33 -51.93 -0.38 0.73 16 37 H 0.08 1.36 7.34 -51.93 -0.38 0.97 16 38 H 0.09 1.47 7.44 -51.93 -0.39 1.08 16 39 H 0.09 1.22 7.46 -51.93 -0.39 0.84 16 LS Contribution 309.79 15.07 4.67 4.67 Total: -1.00 -32.67 309.79 -8.32 -41.00 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -6.34 Total: -3.00 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -1.16 Total: 7.37 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: -0.56 Total: -54.26 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.10 Total: -13.79 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.03 Total: 18.01 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.67 -8.32 -41.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083108954.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.008 kcal (2) G-P(sol) polarization free energy of solvation -32.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds