Wall clock time and date at job start Sun Mar 29 2020 22:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47207 * 2 1 4 4 C 1.46494 * 119.99898 * 275.88820 * 3 2 1 5 5 C 1.50703 * 109.47343 * 269.99850 * 4 3 2 6 6 H 1.08001 * 119.99532 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00284 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99648 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 119.99907 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47123 * 90.00397 * 9 7 5 11 11 H 1.48500 * 109.47355 * 209.99953 * 9 7 5 12 12 H 1.48498 * 109.47369 * 330.00500 * 9 7 5 13 13 C 1.34775 * 120.00091 * 95.88768 * 3 2 1 14 14 O 1.21275 * 120.00068 * 185.00731 * 13 3 2 15 15 C 1.50704 * 119.99871 * 5.00643 * 13 3 2 16 16 H 1.08996 * 110.66916 * 36.67383 * 15 13 3 17 17 C 1.54838 * 110.61168 * 159.62559 * 15 13 3 18 18 C 1.55848 * 103.51685 * 118.50633 * 17 15 13 19 19 H 1.09010 * 115.57495 * 158.88746 * 18 17 15 20 20 C 1.55844 * 105.03504 * 288.26947 * 18 17 15 21 21 C 1.55856 * 103.60319 * 72.33826 * 20 18 17 22 22 C 1.55849 * 103.04291 * 359.11494 * 21 20 18 23 23 H 1.08999 * 115.58367 * 159.77047 * 22 21 20 24 24 N 1.50646 * 101.03059 * 32.99530 * 18 17 15 25 25 H 1.09002 * 109.46904 * 295.43096 * 1 2 3 26 26 H 1.08994 * 109.46929 * 55.43443 * 1 2 3 27 27 H 1.09000 * 109.46615 * 175.43032 * 1 2 3 28 28 H 1.09004 * 109.47321 * 239.99681 * 2 1 3 29 29 H 1.08998 * 109.46908 * 120.00215 * 2 1 3 30 30 H 1.09001 * 109.47176 * 30.00084 * 4 3 2 31 31 H 1.08998 * 109.47288 * 150.00050 * 4 3 2 32 32 H 0.97003 * 119.99866 * 180.02562 * 8 7 5 33 33 H 1.09000 * 110.61446 * 359.97438 * 17 15 13 34 34 H 1.09000 * 110.74261 * 237.08130 * 17 15 13 35 35 H 1.08993 * 110.61248 * 190.24237 * 20 18 17 36 36 H 1.08998 * 110.61318 * 313.06722 * 20 18 17 37 37 H 1.09008 * 110.08599 * 241.11589 * 21 20 18 38 38 H 1.08993 * 111.59786 * 117.82258 * 21 20 18 39 39 H 1.00900 * 111.00374 * 62.34410 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1398 2.1151 -1.2620 5 6 3.5140 1.8957 -1.8405 6 1 4.2255 1.2716 -1.3203 7 6 3.8625 2.4909 -3.0344 8 7 2.9959 3.2505 -3.6681 9 14 5.5660 2.2195 -3.7511 10 1 5.5462 1.0277 -4.6369 11 1 5.9685 3.4136 -4.5368 12 1 6.5375 2.0013 -2.6494 13 6 2.3559 1.9766 1.1610 14 8 2.6732 3.1471 1.1724 15 6 2.3390 1.1880 2.4451 16 1 2.6746 0.1654 2.2730 17 6 3.2165 1.8763 3.5192 18 6 2.2048 2.2111 4.6564 19 1 2.6410 2.3695 5.6427 20 6 1.3359 3.3764 4.0943 21 6 0.4404 2.6826 3.0239 22 6 0.9143 1.1989 3.0769 23 1 0.2149 0.4666 2.6734 24 7 1.2465 1.0546 4.5393 25 1 -0.3633 0.4413 0.9281 26 1 -0.3633 0.5830 -0.8462 27 1 -0.3632 -1.0244 -0.0819 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.3881 1.7561 -1.9649 31 1 1.9881 3.1790 -1.0797 32 1 3.2409 3.6690 -4.5082 33 1 3.6641 2.7876 3.1227 34 1 3.9887 1.1970 3.8802 35 1 0.7145 3.8053 4.8804 36 1 1.9667 4.1429 3.6443 37 1 0.6321 3.1117 2.0403 38 1 -0.6173 2.7568 3.2764 39 1 1.7133 0.1784 4.7193 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083870613.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:58 Heat of formation + Delta-G solvation = -17.432204 kcal Electronic energy + Delta-G solvation = -19878.752736 eV Core-core repulsion = 17014.549420 eV Total energy + Delta-G solvation = -2864.203316 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.86920 -38.07199 -35.29670 -32.82941 -30.56580 -30.16608 -29.68020 -29.31913 -26.98649 -23.54042 -22.90497 -21.76929 -20.74826 -19.66948 -17.73983 -17.15616 -16.57689 -16.31858 -15.66733 -15.29343 -14.31501 -14.08296 -13.43319 -13.21930 -12.89047 -12.60217 -12.35711 -12.16329 -11.92161 -11.84795 -11.66415 -11.59304 -11.26899 -11.19334 -10.95750 -10.86191 -10.65325 -10.56812 -10.46242 -10.14237 -9.89114 -9.63230 -9.14431 -8.56856 -8.45019 -7.64326 -6.05831 -4.10756 3.28115 3.34044 3.36231 3.41680 3.87293 4.18011 4.43504 4.65395 4.73868 4.97453 5.09826 5.22052 5.26064 5.30391 5.34665 5.46750 5.49391 5.59870 5.66265 5.77227 5.79608 5.85879 6.07067 6.11484 6.19508 6.24858 6.30990 6.33383 6.42602 6.52684 6.67793 7.08544 7.24936 7.45191 7.55728 7.91131 8.22661 8.44491 8.88992 9.11052 9.54579 11.02136 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.029765 B = 0.006410 C = 0.005961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.488240 B = 4367.366020 C = 4695.849547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.105 3.895 3 N -0.596 5.596 4 C 0.246 3.754 5 C -0.527 4.527 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.521 3.479 14 O -0.540 6.540 15 C -0.148 4.148 16 H 0.089 0.911 17 C -0.143 4.143 18 C 0.048 3.952 19 H 0.112 0.888 20 C -0.108 4.108 21 C -0.122 4.122 22 C 0.062 3.938 23 H 0.116 0.884 24 N -0.649 5.649 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.031 0.969 31 H 0.044 0.956 32 H 0.263 0.737 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.401 -6.753 13.392 15.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.020 4.020 3 N -0.327 5.327 4 C 0.127 3.873 5 C -0.566 4.566 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.200 1.200 13 C 0.308 3.692 14 O -0.417 6.417 15 C -0.171 4.171 16 H 0.107 0.893 17 C -0.182 4.182 18 C -0.062 4.062 19 H 0.129 0.871 20 C -0.146 4.146 21 C -0.159 4.159 22 C -0.048 4.048 23 H 0.133 0.867 24 N -0.275 5.275 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.931 -5.737 13.573 15.539 hybrid contribution 1.864 -0.667 -1.156 2.293 sum -3.067 -6.403 12.417 14.304 Atomic orbital electron populations 1.22289 0.96680 1.01545 1.02447 1.21439 0.93705 0.84403 1.02419 1.48220 1.62951 1.13266 1.08265 1.19246 0.96709 0.92989 0.78364 1.21440 0.98966 1.30292 1.05914 0.92596 1.24932 0.97422 0.94913 0.96814 1.69933 1.34842 1.31805 1.16710 0.86510 0.84321 0.77658 0.79013 1.20625 1.21048 1.19957 1.19881 0.77458 0.87522 0.84372 1.90628 1.48543 1.16451 1.86125 1.23162 0.98395 1.00276 0.95252 0.89320 1.23309 0.97593 1.02267 0.95070 1.24287 0.91785 0.92598 0.97487 0.87060 1.22680 0.97631 0.96730 0.97586 1.22870 0.99012 0.93493 1.00565 1.24272 0.94087 0.98619 0.87805 0.86652 1.66043 1.37515 1.05631 1.18275 0.92785 0.91890 0.92210 0.90344 0.91630 0.95121 0.93815 0.92713 0.88726 0.91788 0.92022 0.90510 0.90051 0.91533 0.85905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.23 37.16 0.38 -1.94 16 2 C 0.10 1.67 6.08 -4.04 -0.02 1.65 16 3 N -0.60 -12.41 2.46 -175.06 -0.43 -12.84 16 4 C 0.25 6.40 5.22 -5.20 -0.03 6.38 16 5 C -0.53 -14.95 9.39 -34.44 -0.32 -15.27 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 9 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.52 10.59 5.38 -10.98 -0.06 10.53 16 14 O -0.54 -13.08 13.94 5.56 0.08 -13.00 16 15 C -0.15 -2.23 2.28 -89.28 -0.20 -2.44 16 16 H 0.09 1.21 6.37 -51.93 -0.33 0.88 16 17 C -0.14 -2.04 5.86 -24.24 -0.14 -2.18 16 18 C 0.05 0.60 5.59 -62.56 -0.35 0.25 16 19 H 0.11 1.16 8.14 -51.92 -0.42 0.73 16 20 C -0.11 -1.51 6.46 -23.69 -0.15 -1.66 16 21 C -0.12 -1.81 6.19 -23.69 -0.15 -1.95 16 22 C 0.06 0.83 4.91 -62.56 -0.31 0.52 16 23 H 0.12 1.38 6.23 -51.93 -0.32 1.06 16 24 N -0.65 -7.76 7.70 -88.23 -0.68 -8.44 16 25 H 0.05 0.69 5.80 -51.93 -0.30 0.39 16 26 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 1.31 8.12 -51.93 -0.42 0.89 16 29 H 0.07 0.88 5.68 -51.93 -0.29 0.58 16 30 H 0.03 0.81 8.02 -51.93 -0.42 0.39 16 31 H 0.04 1.29 7.36 -51.93 -0.38 0.91 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.09 1.62 6.42 -51.93 -0.33 1.29 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 1.19 7.82 -51.93 -0.41 0.79 16 37 H 0.08 1.47 5.60 -51.92 -0.29 1.18 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.33 3.36 8.66 -39.29 -0.34 3.02 16 LS Contribution 302.28 15.07 4.56 4.56 Total: -1.00 -31.74 302.28 -8.13 -39.88 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -5.92 Total: 3.31 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -1.45 Total: -4.47 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: -0.37 Total: -47.14 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.08 Total: -13.00 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.74 -8.13 -39.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083870613.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.446 kcal (2) G-P(sol) polarization free energy of solvation -31.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds