Wall clock time and date at job start Sun Mar 29 2020 22:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47207 * 2 1 4 4 C 1.46494 * 119.99898 * 275.88820 * 3 2 1 5 5 C 1.50703 * 109.47343 * 269.99850 * 4 3 2 6 6 H 1.08001 * 119.99532 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00284 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99648 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 119.99907 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47123 * 90.00397 * 9 7 5 11 11 H 1.48500 * 109.47355 * 209.99953 * 9 7 5 12 12 H 1.48498 * 109.47369 * 330.00500 * 9 7 5 13 13 C 1.34775 * 120.00091 * 95.88768 * 3 2 1 14 14 O 1.21275 * 120.00068 * 185.00731 * 13 3 2 15 15 C 1.50704 * 119.99871 * 5.00643 * 13 3 2 16 16 H 1.08996 * 110.66916 * 36.67383 * 15 13 3 17 17 C 1.54838 * 110.61168 * 159.62559 * 15 13 3 18 18 C 1.55848 * 103.51685 * 118.50633 * 17 15 13 19 19 H 1.09010 * 115.57495 * 158.88746 * 18 17 15 20 20 C 1.55844 * 105.03504 * 288.26947 * 18 17 15 21 21 C 1.55856 * 103.60319 * 72.33826 * 20 18 17 22 22 C 1.55849 * 103.04291 * 359.11494 * 21 20 18 23 23 H 1.08999 * 115.58367 * 159.77047 * 22 21 20 24 24 N 1.50646 * 101.03059 * 32.99530 * 18 17 15 25 25 H 1.09002 * 109.46904 * 295.43096 * 1 2 3 26 26 H 1.08994 * 109.46929 * 55.43443 * 1 2 3 27 27 H 1.09000 * 109.46615 * 175.43032 * 1 2 3 28 28 H 1.09004 * 109.47321 * 239.99681 * 2 1 3 29 29 H 1.08998 * 109.46908 * 120.00215 * 2 1 3 30 30 H 1.09001 * 109.47176 * 30.00084 * 4 3 2 31 31 H 1.08998 * 109.47288 * 150.00050 * 4 3 2 32 32 H 0.97003 * 119.99866 * 180.02562 * 8 7 5 33 33 H 1.09000 * 110.61446 * 359.97438 * 17 15 13 34 34 H 1.09000 * 110.74261 * 237.08130 * 17 15 13 35 35 H 1.08993 * 110.61248 * 190.24237 * 20 18 17 36 36 H 1.08998 * 110.61318 * 313.06722 * 20 18 17 37 37 H 1.09008 * 110.08599 * 241.11589 * 21 20 18 38 38 H 1.08993 * 111.59786 * 117.82258 * 21 20 18 39 39 H 1.00900 * 111.00374 * 62.34410 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1398 2.1151 -1.2620 5 6 3.5140 1.8957 -1.8405 6 1 4.2255 1.2716 -1.3203 7 6 3.8625 2.4909 -3.0344 8 7 2.9959 3.2505 -3.6681 9 14 5.5660 2.2195 -3.7511 10 1 5.5462 1.0277 -4.6369 11 1 5.9685 3.4136 -4.5368 12 1 6.5375 2.0013 -2.6494 13 6 2.3559 1.9766 1.1610 14 8 2.6732 3.1471 1.1724 15 6 2.3390 1.1880 2.4451 16 1 2.6746 0.1654 2.2730 17 6 3.2165 1.8763 3.5192 18 6 2.2048 2.2111 4.6564 19 1 2.6410 2.3695 5.6427 20 6 1.3359 3.3764 4.0943 21 6 0.4404 2.6826 3.0239 22 6 0.9143 1.1989 3.0769 23 1 0.2149 0.4666 2.6734 24 7 1.2465 1.0546 4.5393 25 1 -0.3633 0.4413 0.9281 26 1 -0.3633 0.5830 -0.8462 27 1 -0.3632 -1.0244 -0.0819 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.3881 1.7561 -1.9649 31 1 1.9881 3.1790 -1.0797 32 1 3.2409 3.6690 -4.5082 33 1 3.6641 2.7876 3.1227 34 1 3.9887 1.1970 3.8802 35 1 0.7145 3.8053 4.8804 36 1 1.9667 4.1429 3.6443 37 1 0.6321 3.1117 2.0403 38 1 -0.6173 2.7568 3.2764 39 1 1.7133 0.1784 4.7193 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083870613.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:58 Heat of formation + Delta-G solvation = -39.964126 kcal Electronic energy + Delta-G solvation = -19879.729793 eV Core-core repulsion = 17014.549420 eV Total energy + Delta-G solvation = -2865.180373 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.13093 -39.55512 -36.95233 -34.93892 -31.92334 -31.58190 -30.85745 -30.38539 -28.88318 -25.40391 -24.23437 -23.20054 -21.84518 -20.92325 -19.21004 -18.62317 -18.33106 -17.77660 -17.06228 -16.95974 -16.17700 -15.54015 -14.82945 -14.68648 -14.31630 -13.85811 -13.77214 -13.59742 -13.27670 -13.21939 -13.09157 -12.96273 -12.82573 -12.65990 -12.53709 -12.43123 -12.17821 -12.03313 -11.80607 -11.73397 -11.67661 -11.00085 -10.66960 -10.61061 -9.76964 -9.40480 -8.24995 -6.40583 1.33548 1.36629 1.46814 1.83165 2.28493 2.42492 3.03946 3.09451 3.53115 3.59272 3.84201 3.91233 4.04003 4.11950 4.21079 4.32680 4.38022 4.41674 4.51184 4.62605 4.70768 4.80352 4.94393 4.97516 4.99225 5.05059 5.08672 5.17204 5.19677 5.23595 5.28281 5.40946 5.56077 5.56513 5.86407 6.04545 6.40923 6.67972 6.82792 7.26108 7.51724 8.81952 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.029765 B = 0.006410 C = 0.005961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.488240 B = 4367.366020 C = 4695.849547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.098 3.902 3 N -0.603 5.603 4 C 0.264 3.736 5 C -0.544 4.544 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.968 3.032 10 H -0.262 1.262 11 H -0.281 1.281 12 H -0.273 1.273 13 C 0.513 3.487 14 O -0.591 6.591 15 C -0.140 4.140 16 H 0.115 0.885 17 C -0.146 4.146 18 C 0.061 3.939 19 H 0.141 0.859 20 C -0.113 4.113 21 C -0.128 4.128 22 C 0.073 3.927 23 H 0.138 0.862 24 N -0.636 5.636 25 H 0.064 0.936 26 H 0.035 0.965 27 H 0.096 0.904 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.018 0.982 31 H -0.006 1.006 32 H 0.267 0.733 33 H 0.057 0.943 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.038 0.962 38 H 0.079 0.921 39 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.065 -9.545 15.314 18.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.025 4.025 3 N -0.333 5.333 4 C 0.142 3.858 5 C -0.583 4.583 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.793 3.207 10 H -0.187 1.187 11 H -0.206 1.206 12 H -0.198 1.198 13 C 0.302 3.698 14 O -0.473 6.473 15 C -0.163 4.163 16 H 0.132 0.868 17 C -0.185 4.185 18 C -0.049 4.049 19 H 0.159 0.841 20 C -0.151 4.151 21 C -0.166 4.166 22 C -0.037 4.037 23 H 0.155 0.845 24 N -0.263 5.263 25 H 0.083 0.917 26 H 0.054 0.946 27 H 0.115 0.885 28 H 0.086 0.914 29 H 0.121 0.879 30 H 0.036 0.964 31 H 0.012 0.988 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.097 0.903 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.613 -8.586 15.519 18.326 hybrid contribution 1.716 0.258 -1.750 2.464 sum -2.897 -8.329 13.769 16.351 Atomic orbital electron populations 1.22228 0.94638 1.03460 1.01818 1.21772 0.95390 0.81583 1.03708 1.48241 1.63351 1.15005 1.06752 1.18636 0.95620 0.90901 0.80600 1.21717 0.99771 1.30453 1.06359 0.92940 1.25882 1.01716 0.94396 0.97206 1.70060 1.37011 1.32557 1.17185 0.85404 0.78857 0.78216 0.78270 1.18677 1.20593 1.19774 1.20852 0.75907 0.87326 0.85702 1.90602 1.50566 1.19053 1.87044 1.23219 1.00417 1.00386 0.92265 0.86751 1.23343 0.98522 1.01193 0.95420 1.24340 0.90762 0.91804 0.97961 0.84129 1.22676 0.97721 0.97004 0.97675 1.22848 1.00053 0.95028 0.98638 1.24306 0.92988 0.97763 0.88638 0.84470 1.65997 1.37468 1.06338 1.16501 0.91743 0.94615 0.88523 0.91363 0.87945 0.96362 0.98759 0.92387 0.92433 0.89129 0.90420 0.93413 0.94281 0.90275 0.83928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.13 10.23 71.98 0.74 -3.39 16 2 C 0.10 2.99 6.08 86.38 0.53 3.51 16 3 N -0.60 -25.79 2.46 -826.16 -2.03 -27.82 16 4 C 0.26 14.56 5.22 85.63 0.45 15.01 16 5 C -0.54 -31.91 9.39 25.60 0.24 -31.67 16 6 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.41 5.46 84.66 0.46 0.87 16 8 N -0.93 -57.07 13.29 21.45 0.28 -56.78 16 9 Si 0.97 45.36 29.54 68.60 2.03 47.39 16 10 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 13 C 0.51 21.39 5.38 87.66 0.47 21.87 16 14 O -0.59 -30.65 13.94 -3.01 -0.04 -30.70 16 15 C -0.14 -3.97 2.28 -9.92 -0.02 -4.00 16 16 H 0.11 2.67 6.37 -2.39 -0.02 2.65 16 17 C -0.15 -3.89 5.86 32.21 0.19 -3.71 16 18 C 0.06 1.34 5.59 46.15 0.26 1.59 16 19 H 0.14 2.34 8.14 -2.38 -0.02 2.32 16 20 C -0.11 -3.08 6.46 32.57 0.21 -2.87 16 21 C -0.13 -3.75 6.19 32.57 0.20 -3.55 16 22 C 0.07 1.74 4.91 46.15 0.23 1.97 16 23 H 0.14 2.70 6.23 -2.39 -0.01 2.68 16 24 N -0.64 -12.52 7.70 -433.05 -3.34 -15.86 16 25 H 0.06 1.48 5.80 -2.39 -0.01 1.47 16 26 H 0.03 1.09 8.09 -2.39 -0.02 1.07 16 27 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.07 2.23 8.12 -2.39 -0.02 2.21 16 29 H 0.10 2.37 5.68 -2.39 -0.01 2.36 16 30 H 0.02 1.03 8.02 -2.39 -0.02 1.01 16 31 H -0.01 -0.37 7.36 -2.39 -0.02 -0.38 16 32 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 33 H 0.06 2.02 6.42 -2.39 -0.02 2.00 16 34 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.05 1.57 7.82 -2.39 -0.02 1.55 16 37 H 0.04 1.49 5.60 -2.38 -0.01 1.47 16 38 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 39 H 0.34 5.20 8.66 -89.69 -0.78 4.43 16 Total: -1.00 -74.11 302.28 1.12 -72.99 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.27 Total: 15.16 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: 3.94 Total: -4.37 kcal Atomic # 7 Polarization: -95.39 SS G_CDS: -5.08 Total: -100.47 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.04 Total: -30.70 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -74.11 1.12 -72.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083870613.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.023 kcal (2) G-P(sol) polarization free energy of solvation -74.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds