Wall clock time and date at job start Sun Mar 29 2020 23:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21283 * 120.00374 * 2 1 4 4 N 1.34783 * 120.00054 * 180.02562 * 2 1 3 5 5 C 1.47073 * 120.88030 * 186.57052 * 4 2 1 6 6 C 1.53245 * 108.51799 * 231.16339 * 5 4 2 7 7 N 1.46896 * 109.34000 * 306.16827 * 6 5 4 8 8 C 1.46902 * 111.00359 * 187.25525 * 7 6 5 9 9 C 1.52999 * 109.47426 * 162.04664 * 8 7 6 10 10 C 1.50699 * 115.54905 * 62.30093 * 9 8 7 11 11 H 1.08009 * 119.99664 * 232.04718 * 10 9 8 12 12 C 1.37869 * 120.00332 * 52.04642 * 10 9 8 13 13 N 1.31519 * 119.99904 * 354.46376 * 12 10 9 14 14 Si 1.86800 * 120.00474 * 174.74432 * 12 10 9 15 15 H 1.48499 * 109.47185 * 59.99701 * 14 12 10 16 16 H 1.48491 * 109.47196 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.46603 * 299.99958 * 14 12 10 18 18 C 1.52994 * 117.49776 * 207.97350 * 9 8 7 19 19 C 1.53003 * 117.49517 * 276.63353 * 9 8 7 20 20 C 1.46897 * 111.26778 * 63.10668 * 7 6 5 21 21 C 1.47079 * 120.87916 * 6.54691 * 4 2 1 22 22 H 1.09000 * 109.47462 * 185.78310 * 1 2 3 23 23 H 1.08996 * 109.47217 * 305.78667 * 1 2 3 24 24 H 1.09003 * 109.47251 * 65.78779 * 1 2 3 25 25 H 1.08992 * 109.63269 * 111.45467 * 5 4 2 26 26 H 1.09000 * 109.63174 * 350.86632 * 5 4 2 27 27 H 1.09007 * 109.49036 * 186.21394 * 6 5 4 28 28 H 1.08997 * 109.51711 * 66.14452 * 6 5 4 29 29 H 1.09005 * 109.46936 * 42.04448 * 8 7 6 30 30 H 1.09002 * 109.46934 * 282.04915 * 8 7 6 31 31 H 0.97001 * 120.00346 * 185.00497 * 13 12 10 32 32 H 1.09002 * 117.49883 * 215.00353 * 18 9 8 33 33 H 1.08997 * 117.50171 * 0.02562 * 18 9 8 34 34 H 1.08998 * 117.50308 * 359.97241 * 19 9 8 35 35 H 1.09001 * 117.49878 * 144.97496 * 19 9 8 36 36 H 1.08998 * 109.49615 * 56.85313 * 20 7 6 37 37 H 1.09005 * 109.49657 * 176.93905 * 20 7 6 38 38 H 1.09002 * 109.62536 * 248.54902 * 21 4 2 39 39 H 1.08998 * 109.62778 * 9.12319 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6442 -1.1940 0.1439 6 6 4.2294 -2.0472 -0.9866 7 7 3.5810 -3.3653 -0.9869 8 6 4.2313 -4.2719 -1.9426 9 6 3.8531 -5.7173 -1.6130 10 6 2.3859 -6.0452 -1.7175 11 1 1.8784 -6.5197 -0.8906 12 6 1.6915 -5.7394 -2.8686 13 7 2.2801 -5.0648 -3.8321 14 14 -0.0877 -6.2763 -3.0567 15 1 -0.9044 -5.6717 -1.9738 16 1 -0.6033 -5.8282 -4.3752 17 1 -0.1697 -7.7567 -2.9708 18 6 4.8508 -6.8129 -1.9938 19 6 4.6601 -6.4279 -0.5245 20 6 2.1429 -3.2517 -1.2641 21 6 1.4722 -2.4479 -0.1450 22 1 -0.3634 -1.0224 0.1035 23 1 -0.3633 0.6009 0.8336 24 1 -0.3634 0.4215 -0.9373 25 1 3.9093 -1.6306 1.1068 26 1 4.0374 -0.1795 0.0779 27 1 5.3015 -2.1693 -0.8326 28 1 4.0530 -1.5549 -1.9430 29 1 5.3130 -4.1550 -1.8757 30 1 3.9017 -4.0315 -2.9534 31 1 1.7717 -4.7867 -4.6100 32 1 4.4460 -7.7709 -2.3200 33 1 5.7768 -6.5040 -2.4787 34 1 5.4606 -5.8659 -0.0436 35 1 4.1297 -7.1324 0.1162 36 1 1.9951 -2.7425 -2.2164 37 1 1.7017 -4.2474 -1.3113 38 1 1.5284 -3.0050 0.7902 39 1 0.4293 -2.2624 -0.4018 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259244.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:37 Heat of formation + Delta-G solvation = 10.178005 kcal Electronic energy + Delta-G solvation = -19816.554679 eV Core-core repulsion = 16953.548632 eV Total energy + Delta-G solvation = -2863.006047 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.75596 -37.79285 -36.10273 -33.58019 -32.41897 -31.02943 -29.33589 -27.32902 -25.81184 -23.73564 -22.89294 -21.13334 -20.61943 -19.04475 -18.40222 -16.91613 -16.11026 -15.55729 -15.19029 -14.82696 -14.36301 -14.18067 -13.94230 -13.41900 -13.21463 -12.96523 -12.92804 -12.45434 -11.92057 -11.70410 -11.54658 -11.27278 -11.03356 -10.82210 -10.78936 -10.58719 -10.43688 -10.30058 -10.08414 -9.53077 -9.42966 -8.87667 -8.70165 -8.30450 -8.09304 -7.27038 -6.10841 -4.16428 2.85079 3.16891 3.25226 3.27360 3.33623 4.23483 4.70844 4.83881 5.03147 5.24140 5.34430 5.48460 5.53306 5.61346 5.68504 5.76706 5.84962 5.96709 6.05691 6.08729 6.23298 6.33689 6.40273 6.59890 6.63513 6.76942 6.80268 6.86404 6.97158 7.19166 7.34543 7.37837 7.48616 7.72207 7.80298 8.15771 8.19921 8.39953 8.41148 8.77739 9.36129 10.85570 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.020743 B = 0.008310 C = 0.006514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.539244 B = 3368.435302 C = 4297.276196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.509 3.491 3 O -0.566 6.566 4 N -0.608 5.608 5 C 0.119 3.881 6 C 0.039 3.961 7 N -0.521 5.521 8 C 0.091 3.909 9 C 0.060 3.940 10 C -0.477 4.477 11 H 0.062 0.938 12 C 0.068 3.932 13 N -0.877 5.877 14 Si 0.885 3.115 15 H -0.273 1.273 16 H -0.286 1.286 17 H -0.275 1.275 18 C -0.198 4.198 19 C -0.198 4.198 20 C 0.025 3.975 21 C 0.102 3.898 22 H 0.083 0.917 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.026 0.974 29 H 0.029 0.971 30 H 0.083 0.917 31 H 0.263 0.737 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.024 0.976 37 H 0.150 0.850 38 H 0.073 0.927 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.950 4.365 5.182 7.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.299 3.701 3 O -0.446 6.446 4 N -0.341 5.341 5 C -0.004 4.004 6 C -0.090 4.090 7 N -0.245 5.245 8 C -0.036 4.036 9 C 0.059 3.941 10 C -0.515 4.515 11 H 0.080 0.920 12 C -0.135 4.135 13 N -0.514 5.514 14 Si 0.712 3.288 15 H -0.198 1.198 16 H -0.212 1.212 17 H -0.200 1.200 18 C -0.236 4.236 19 C -0.235 4.235 20 C -0.102 4.102 21 C -0.020 4.020 22 H 0.102 0.898 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.088 0.912 26 H 0.103 0.897 27 H 0.092 0.908 28 H 0.044 0.956 29 H 0.048 0.952 30 H 0.101 0.899 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.043 0.957 37 H 0.166 0.834 38 H 0.091 0.909 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.604 4.744 5.416 7.376 hybrid contribution -0.919 -0.032 -1.036 1.385 sum -2.523 4.711 4.380 6.910 Atomic orbital electron populations 1.21983 0.92411 1.04628 1.04739 1.20760 0.90553 0.83203 0.75634 1.90654 1.70794 1.31361 1.51744 1.48375 1.07942 1.06655 1.71143 1.21661 0.79376 1.00379 0.98954 1.22425 0.98617 0.91375 0.96605 1.61800 1.02865 1.07496 1.52324 1.21741 0.93761 0.91916 0.96206 1.18810 0.91746 0.88378 0.95149 1.20447 0.92669 1.38690 0.99707 0.91979 1.24989 0.98145 0.95004 0.95378 1.69828 1.35825 1.36852 1.08906 0.86772 0.84805 0.79666 0.77596 1.19815 1.21159 1.20025 1.22891 1.01549 1.02130 0.97061 1.22765 1.04063 1.05345 0.91323 1.23235 0.89081 1.04590 0.93298 1.22266 0.95804 0.82880 1.01058 0.89788 0.89136 0.89127 0.91189 0.89731 0.90818 0.95568 0.95230 0.89884 0.92697 0.90576 0.91979 0.91492 0.90963 0.95731 0.83356 0.90897 0.90081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.12 9.98 36.00 0.36 -1.76 16 2 C 0.51 8.38 7.80 -10.99 -0.09 8.29 16 3 O -0.57 -11.18 16.56 5.55 0.09 -11.09 16 4 N -0.61 -10.05 3.01 -172.47 -0.52 -10.57 16 5 C 0.12 1.95 6.61 -3.60 -0.02 1.93 16 6 C 0.04 0.70 5.60 -3.70 -0.02 0.67 16 7 N -0.52 -10.45 4.57 -234.31 -1.07 -11.52 16 8 C 0.09 2.01 4.72 -3.82 -0.02 1.99 16 9 C 0.06 1.38 1.86 -155.66 -0.29 1.09 16 10 C -0.48 -11.64 6.45 -34.44 -0.22 -11.86 16 11 H 0.06 1.53 7.82 -52.48 -0.41 1.12 16 12 C 0.07 1.64 3.69 -17.82 -0.07 1.58 16 13 N -0.88 -22.22 10.77 55.43 0.60 -21.62 16 14 Si 0.88 19.01 29.54 -169.99 -5.02 13.99 16 15 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 16 H -0.29 -6.24 7.11 56.52 0.40 -5.83 16 17 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 18 C -0.20 -4.35 9.94 -26.69 -0.27 -4.61 16 19 C -0.20 -4.16 9.96 -26.69 -0.27 -4.42 16 20 C 0.03 0.51 4.67 -3.70 -0.02 0.49 16 21 C 0.10 1.66 6.36 -3.60 -0.02 1.63 16 22 H 0.08 0.88 5.42 -51.93 -0.28 0.60 16 23 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.08 1.39 7.04 -51.93 -0.37 1.03 16 27 H 0.07 1.20 7.91 -51.93 -0.41 0.79 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.03 0.62 7.78 -51.93 -0.40 0.22 16 30 H 0.08 2.07 5.77 -51.93 -0.30 1.77 16 31 H 0.26 6.51 8.32 -40.82 -0.34 6.17 16 32 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.15 3.31 3.48 -51.93 -0.18 3.13 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.08 1.13 5.42 -51.93 -0.28 0.85 16 LS Contribution 303.78 15.07 4.58 4.58 Total: -1.00 -27.15 303.78 -8.28 -35.43 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -6.00 Total: 5.78 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -0.94 Total: -4.98 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: -0.99 Total: -43.72 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.09 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.15 -8.28 -35.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259244.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.611 kcal (2) G-P(sol) polarization free energy of solvation -27.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds