Wall clock time and date at job start Sun Mar 29 2020 23:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34772 * 120.00256 * 2 1 4 4 O 1.21278 * 120.00152 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00005 * 179.97438 * 3 2 1 6 6 H 1.09001 * 110.00783 * 350.49147 * 5 3 2 7 7 C 1.54321 * 109.88769 * 111.60508 * 5 3 2 8 8 C 1.55142 * 103.01744 * 141.69027 * 7 5 3 9 9 C 1.54908 * 101.65215 * 324.34752 * 8 7 5 10 10 N 1.47445 * 109.88862 * 229.37489 * 5 3 2 11 11 C 1.46896 * 110.99806 * 3.85424 * 10 5 3 12 12 C 1.53009 * 109.46853 * 163.77078 * 11 10 5 13 13 C 1.50700 * 115.54926 * 305.91410 * 12 11 10 14 14 H 1.07994 * 119.99970 * 144.45466 * 13 12 11 15 15 C 1.37878 * 120.00107 * 324.45851 * 13 12 11 16 16 N 1.31517 * 119.99934 * 1.34053 * 15 13 12 17 17 Si 1.86797 * 120.00118 * 181.34074 * 15 13 12 18 18 H 1.48503 * 109.46924 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47077 * 119.99517 * 17 15 13 20 20 H 1.48495 * 109.47251 * 239.99620 * 17 15 13 21 21 C 1.52998 * 117.49838 * 160.24543 * 12 11 10 22 22 C 1.53000 * 117.49868 * 91.58868 * 12 11 10 23 23 H 1.08993 * 109.47126 * 59.99650 * 1 2 3 24 24 H 1.08999 * 109.47222 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46899 * 300.00033 * 1 2 3 26 26 H 0.97001 * 119.99379 * 180.02562 * 2 1 3 27 27 H 1.09000 * 110.70416 * 260.07572 * 7 5 3 28 28 H 1.09005 * 110.70277 * 23.31058 * 7 5 3 29 29 H 1.08994 * 110.98934 * 82.43859 * 8 7 5 30 30 H 1.09000 * 110.98594 * 206.22286 * 8 7 5 31 31 H 1.09003 * 110.37164 * 278.23697 * 9 8 7 32 32 H 1.08996 * 110.37339 * 155.90520 * 9 8 7 33 33 H 1.09002 * 109.47526 * 283.76498 * 11 10 5 34 34 H 1.08993 * 109.47453 * 43.77242 * 11 10 5 35 35 H 0.97005 * 120.00071 * 185.01478 * 16 15 13 36 36 H 1.09010 * 117.49944 * 0.02562 * 21 12 11 37 37 H 1.08998 * 117.49921 * 145.01577 * 21 12 11 38 38 H 1.08997 * 117.49642 * 214.98124 * 22 12 11 39 39 H 1.08999 * 117.50036 * 359.96898 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5326 2.2175 0.0005 5 6 3.6460 1.1671 0.0006 6 1 4.0188 0.1569 0.1702 7 6 4.1715 1.7011 -1.3486 8 6 5.4056 2.5447 -0.9336 9 6 4.9348 3.1459 0.4142 10 7 4.1472 2.0700 1.0529 11 6 3.0393 2.6257 1.8414 12 6 3.5854 3.2148 3.1436 13 6 4.4213 2.2802 3.9796 14 1 5.2669 2.6609 4.5331 15 6 4.1067 0.9391 4.0377 16 7 3.0930 0.4708 3.3428 17 14 5.1201 -0.2127 5.1033 18 1 6.1957 0.5563 5.7792 19 1 4.2443 -0.8406 6.1251 20 1 5.7253 -1.2693 4.2534 21 6 2.7107 4.2309 3.8808 22 6 3.9685 4.6961 3.1429 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.9500 -0.8401 -0.0004 27 1 4.4680 0.8785 -1.9994 28 1 3.4222 2.3269 -1.8335 29 1 6.2820 1.9120 -0.7941 30 1 5.6052 3.3295 -1.6633 31 1 4.3100 4.0221 0.2412 32 1 5.7928 3.4070 1.0336 33 1 2.5426 3.4088 1.2686 34 1 2.3250 1.8353 2.0716 35 1 2.8262 -0.4568 3.4392 36 1 1.7459 4.4794 3.4382 37 1 2.7401 4.2236 4.9703 38 1 4.8250 4.9946 3.7473 39 1 3.8320 5.2508 2.2146 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259379.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:36:08 Heat of formation + Delta-G solvation = 11.662521 kcal Electronic energy + Delta-G solvation = -20297.637541 eV Core-core repulsion = 17434.695867 eV Total energy + Delta-G solvation = -2862.941674 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.95763 -37.23173 -35.87527 -34.03502 -31.95117 -30.68160 -29.21010 -26.11663 -25.49736 -24.42627 -21.43264 -21.12376 -20.50400 -19.45622 -18.87069 -16.84785 -15.85315 -15.69911 -14.82570 -14.55901 -14.51645 -14.26547 -13.47746 -13.32716 -12.98569 -12.81227 -12.20851 -11.97939 -11.77784 -11.44006 -11.25396 -11.15586 -10.93038 -10.75564 -10.60741 -10.40737 -10.33915 -10.21122 -9.73299 -9.27482 -9.21469 -8.71489 -8.60161 -8.42306 -7.93334 -7.00798 -5.74718 -3.83735 3.25090 3.36185 3.43837 3.48934 3.79653 4.52792 4.90867 5.08381 5.21282 5.24331 5.39673 5.51950 5.68622 5.77623 5.81167 5.91607 6.00451 6.11934 6.14315 6.22454 6.30608 6.39325 6.59185 6.66571 6.72967 6.79569 6.83935 6.90416 7.07012 7.15675 7.32887 7.45923 7.74214 7.97884 8.07933 8.29921 8.32737 8.68393 8.84882 9.11854 9.76001 11.21114 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.016542 B = 0.010222 C = 0.008954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.269322 B = 2738.419533 C = 3126.350251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.731 5.731 3 C 0.520 3.480 4 O -0.547 6.547 5 C 0.067 3.933 6 H 0.089 0.911 7 C -0.130 4.130 8 C -0.127 4.127 9 C 0.045 3.955 10 N -0.458 5.458 11 C 0.097 3.903 12 C 0.062 3.938 13 C -0.466 4.466 14 H 0.052 0.948 15 C 0.084 3.916 16 N -0.874 5.874 17 Si 0.889 3.111 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.286 1.286 21 C -0.210 4.210 22 C -0.217 4.217 23 H 0.050 0.950 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.399 0.601 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.035 0.965 32 H 0.079 0.921 33 H 0.014 0.986 34 H 0.120 0.880 35 H 0.251 0.749 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.620 -2.500 -9.233 9.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.382 5.382 3 C 0.307 3.693 4 O -0.424 6.424 5 C -0.045 4.045 6 H 0.107 0.893 7 C -0.169 4.169 8 C -0.165 4.165 9 C -0.083 4.083 10 N -0.181 5.181 11 C -0.030 4.030 12 C 0.061 3.939 13 C -0.503 4.503 14 H 0.070 0.930 15 C -0.118 4.118 16 N -0.512 5.512 17 Si 0.718 3.282 18 H -0.202 1.202 19 H -0.216 1.216 20 H -0.212 1.212 21 C -0.249 4.249 22 C -0.254 4.254 23 H 0.069 0.931 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.232 0.768 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.031 0.969 34 H 0.137 0.863 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.821 -2.211 -8.961 9.266 hybrid contribution 0.096 -0.563 0.264 0.629 sum -0.725 -2.773 -8.697 9.158 Atomic orbital electron populations 1.21397 0.80800 1.01283 1.01740 1.45805 1.07059 1.08988 1.76390 1.21161 0.90704 0.83235 0.74162 1.90659 1.70730 1.31229 1.49743 1.22522 0.89130 1.00731 0.92149 0.89303 1.22770 0.98166 0.99757 0.96244 1.22702 0.97464 0.98925 0.97443 1.23126 0.98305 0.93761 0.93135 1.63838 1.22312 1.15828 1.16169 1.22353 0.91519 0.98515 0.90639 1.19111 0.95516 0.85387 0.93880 1.20396 1.12023 0.91610 1.26262 0.92964 1.24762 0.95019 0.97413 0.94606 1.69886 1.27385 1.14344 1.39592 0.86604 0.80346 0.81090 0.80143 1.20174 1.21592 1.21185 1.22953 0.92906 1.10897 0.98104 1.22900 0.98453 1.03379 1.00672 0.93138 0.91470 0.92351 0.76821 0.91199 0.91394 0.90881 0.91612 0.94639 0.90309 0.96852 0.86256 0.93896 0.92044 0.90677 0.91073 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.30 10.70 59.85 0.64 1.94 16 2 N -0.73 -11.74 5.71 -67.08 -0.38 -12.12 16 3 C 0.52 10.25 4.90 -10.99 -0.05 10.19 16 4 O -0.55 -12.61 13.73 5.56 0.08 -12.53 16 5 C 0.07 1.27 3.83 -67.87 -0.26 1.01 16 6 H 0.09 1.63 7.97 -51.93 -0.41 1.22 16 7 C -0.13 -2.04 6.46 -24.91 -0.16 -2.20 16 8 C -0.13 -1.96 7.08 -24.59 -0.17 -2.14 16 9 C 0.04 0.88 6.01 -2.30 -0.01 0.86 16 10 N -0.46 -10.19 4.57 -224.72 -1.03 -11.22 16 11 C 0.10 2.41 2.33 -3.82 -0.01 2.40 16 12 C 0.06 1.60 1.85 -155.66 -0.29 1.31 16 13 C -0.47 -12.83 8.74 -34.44 -0.30 -13.14 16 14 H 0.05 1.47 7.81 -52.49 -0.41 1.06 16 15 C 0.08 2.25 5.29 -17.82 -0.09 2.15 16 16 N -0.87 -23.23 10.26 55.43 0.57 -22.66 16 17 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 C -0.21 -5.14 9.96 -26.70 -0.27 -5.40 16 22 C -0.22 -5.06 9.51 -26.70 -0.25 -5.32 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.40 5.39 8.71 -40.82 -0.36 5.04 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 1.11 7.77 -51.93 -0.40 0.71 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.04 0.72 7.42 -51.93 -0.39 0.34 16 32 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 33 H 0.01 0.36 6.02 -51.93 -0.31 0.05 16 34 H 0.12 3.25 4.24 -51.93 -0.22 3.03 16 35 H 0.25 6.41 8.32 -40.82 -0.34 6.07 16 36 H 0.06 1.46 8.14 -51.92 -0.42 1.04 16 37 H 0.07 1.82 8.14 -51.93 -0.42 1.39 16 38 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 39 H 0.06 1.38 8.04 -51.93 -0.42 0.97 16 LS Contribution 309.51 15.07 4.66 4.66 Total: -1.00 -30.61 309.51 -8.64 -39.25 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -6.28 Total: 6.84 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -1.23 Total: -8.31 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: -0.84 Total: -46.00 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.08 Total: -12.53 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.61 -8.64 -39.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259379.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.911 kcal (2) G-P(sol) polarization free energy of solvation -30.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds