Wall clock time and date at job start Sun Mar 29 2020 23:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34772 * 120.00256 * 2 1 4 4 O 1.21278 * 120.00152 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00005 * 179.97438 * 3 2 1 6 6 H 1.09001 * 110.00783 * 350.49147 * 5 3 2 7 7 C 1.54321 * 109.88769 * 111.60508 * 5 3 2 8 8 C 1.55142 * 103.01744 * 141.69027 * 7 5 3 9 9 C 1.54908 * 101.65215 * 324.34752 * 8 7 5 10 10 N 1.47445 * 109.88862 * 229.37489 * 5 3 2 11 11 C 1.46896 * 110.99806 * 3.85424 * 10 5 3 12 12 C 1.53009 * 109.46853 * 163.77078 * 11 10 5 13 13 C 1.50700 * 115.54926 * 305.91410 * 12 11 10 14 14 H 1.07994 * 119.99970 * 144.45466 * 13 12 11 15 15 C 1.37878 * 120.00107 * 324.45851 * 13 12 11 16 16 N 1.31517 * 119.99934 * 1.34053 * 15 13 12 17 17 Si 1.86797 * 120.00118 * 181.34074 * 15 13 12 18 18 H 1.48503 * 109.46924 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47077 * 119.99517 * 17 15 13 20 20 H 1.48495 * 109.47251 * 239.99620 * 17 15 13 21 21 C 1.52998 * 117.49838 * 160.24543 * 12 11 10 22 22 C 1.53000 * 117.49868 * 91.58868 * 12 11 10 23 23 H 1.08993 * 109.47126 * 59.99650 * 1 2 3 24 24 H 1.08999 * 109.47222 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46899 * 300.00033 * 1 2 3 26 26 H 0.97001 * 119.99379 * 180.02562 * 2 1 3 27 27 H 1.09000 * 110.70416 * 260.07572 * 7 5 3 28 28 H 1.09005 * 110.70277 * 23.31058 * 7 5 3 29 29 H 1.08994 * 110.98934 * 82.43859 * 8 7 5 30 30 H 1.09000 * 110.98594 * 206.22286 * 8 7 5 31 31 H 1.09003 * 110.37164 * 278.23697 * 9 8 7 32 32 H 1.08996 * 110.37339 * 155.90520 * 9 8 7 33 33 H 1.09002 * 109.47526 * 283.76498 * 11 10 5 34 34 H 1.08993 * 109.47453 * 43.77242 * 11 10 5 35 35 H 0.97005 * 120.00071 * 185.01478 * 16 15 13 36 36 H 1.09010 * 117.49944 * 0.02562 * 21 12 11 37 37 H 1.08998 * 117.49921 * 145.01577 * 21 12 11 38 38 H 1.08997 * 117.49642 * 214.98124 * 22 12 11 39 39 H 1.08999 * 117.50036 * 359.96898 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5326 2.2175 0.0005 5 6 3.6460 1.1671 0.0006 6 1 4.0188 0.1569 0.1702 7 6 4.1715 1.7011 -1.3486 8 6 5.4056 2.5447 -0.9336 9 6 4.9348 3.1459 0.4142 10 7 4.1472 2.0700 1.0529 11 6 3.0393 2.6257 1.8414 12 6 3.5854 3.2148 3.1436 13 6 4.4213 2.2802 3.9796 14 1 5.2669 2.6609 4.5331 15 6 4.1067 0.9391 4.0377 16 7 3.0930 0.4708 3.3428 17 14 5.1201 -0.2127 5.1033 18 1 6.1957 0.5563 5.7792 19 1 4.2443 -0.8406 6.1251 20 1 5.7253 -1.2693 4.2534 21 6 2.7107 4.2309 3.8808 22 6 3.9685 4.6961 3.1429 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.9500 -0.8401 -0.0004 27 1 4.4680 0.8785 -1.9994 28 1 3.4222 2.3269 -1.8335 29 1 6.2820 1.9120 -0.7941 30 1 5.6052 3.3295 -1.6633 31 1 4.3100 4.0221 0.2412 32 1 5.7928 3.4070 1.0336 33 1 2.5426 3.4088 1.2686 34 1 2.3250 1.8353 2.0716 35 1 2.8262 -0.4568 3.4392 36 1 1.7459 4.4794 3.4382 37 1 2.7401 4.2236 4.9703 38 1 4.8250 4.9946 3.7473 39 1 3.8320 5.2508 2.2146 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259379.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:36:08 Heat of formation + Delta-G solvation = -9.486787 kcal Electronic energy + Delta-G solvation = -20298.554644 eV Core-core repulsion = 17434.695867 eV Total energy + Delta-G solvation = -2863.858777 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.49868 -38.87678 -37.62497 -35.46773 -33.99538 -32.24745 -30.64386 -27.55126 -27.36897 -26.22195 -23.02316 -22.86722 -21.97422 -21.03315 -20.72713 -18.51932 -17.65875 -17.14243 -16.58082 -16.24375 -15.99994 -15.80895 -15.26923 -15.01625 -14.50804 -14.35219 -13.86967 -13.39677 -13.12076 -13.05169 -12.91736 -12.89801 -12.73504 -12.47815 -12.25898 -12.18953 -11.90612 -11.75021 -11.58312 -11.15305 -10.87028 -10.62269 -10.47979 -9.96068 -9.93200 -8.70631 -7.76976 -5.93677 1.47876 1.51082 1.60243 1.74416 2.48320 2.55361 3.14190 3.45296 3.71798 3.78453 3.92324 4.01354 4.30157 4.38656 4.49464 4.51403 4.61096 4.64425 4.71906 4.84859 4.89443 4.89955 4.94136 4.98204 5.04212 5.06920 5.13339 5.27478 5.37499 5.44536 5.51200 5.60444 5.73164 6.15308 6.43329 6.51408 6.68396 6.70347 7.05128 7.41558 7.67152 9.16587 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.016542 B = 0.010222 C = 0.008954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.269322 B = 2738.419533 C = 3126.350251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.720 5.720 3 C 0.514 3.486 4 O -0.589 6.589 5 C 0.059 3.941 6 H 0.096 0.904 7 C -0.121 4.121 8 C -0.114 4.114 9 C 0.041 3.959 10 N -0.479 5.479 11 C 0.122 3.878 12 C 0.036 3.964 13 C -0.490 4.490 14 H 0.038 0.962 15 C 0.051 3.949 16 N -0.880 5.880 17 Si 0.947 3.053 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.215 4.215 22 C -0.197 4.197 23 H 0.054 0.946 24 H 0.109 0.891 25 H 0.030 0.970 26 H 0.413 0.587 27 H 0.107 0.893 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.020 0.980 32 H 0.067 0.933 33 H -0.011 1.011 34 H 0.096 0.904 35 H 0.253 0.747 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.243 -4.001 -10.387 11.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.371 5.371 3 C 0.302 3.698 4 O -0.469 6.469 5 C -0.053 4.053 6 H 0.114 0.886 7 C -0.159 4.159 8 C -0.152 4.152 9 C -0.087 4.087 10 N -0.202 5.202 11 C -0.006 4.006 12 C 0.036 3.964 13 C -0.527 4.527 14 H 0.056 0.944 15 C -0.151 4.151 16 N -0.517 5.517 17 Si 0.775 3.225 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.204 1.204 21 C -0.254 4.254 22 C -0.234 4.234 23 H 0.072 0.928 24 H 0.128 0.872 25 H 0.049 0.951 26 H 0.248 0.752 27 H 0.125 0.875 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.038 0.962 32 H 0.086 0.914 33 H 0.007 0.993 34 H 0.114 0.886 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.039 -3.753 -10.127 10.800 hybrid contribution -0.212 -0.124 0.632 0.679 sum -0.173 -3.878 -9.494 10.257 Atomic orbital electron populations 1.21536 0.79478 1.03709 1.00566 1.45760 1.08062 1.08653 1.74668 1.21333 0.91185 0.83519 0.73784 1.90638 1.71481 1.32861 1.51957 1.22655 0.88914 1.00447 0.93249 0.88579 1.22755 0.97677 1.00720 0.94777 1.22680 0.97637 0.99578 0.95301 1.23122 0.97265 0.93030 0.95308 1.63694 1.21706 1.16763 1.18029 1.21895 0.91673 0.96765 0.90258 1.19296 0.96288 0.86341 0.94511 1.20461 1.12318 0.92628 1.27322 0.94413 1.25313 0.95932 0.98293 0.95542 1.70008 1.27621 1.14596 1.39521 0.85713 0.78852 0.79265 0.78705 1.20729 1.21393 1.20371 1.22952 0.93365 1.11037 0.98034 1.22835 0.97864 1.01937 1.00742 0.92762 0.87218 0.95082 0.75206 0.87475 0.92366 0.89457 0.88991 0.96206 0.91420 0.99288 0.88596 0.93662 0.92005 0.90842 0.90572 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.45 10.70 127.77 1.37 3.82 16 2 N -0.72 -22.27 5.71 -484.53 -2.77 -25.04 16 3 C 0.51 20.10 4.90 87.66 0.43 20.52 16 4 O -0.59 -27.73 13.73 -3.02 -0.04 -27.77 16 5 C 0.06 2.17 3.83 44.51 0.17 2.34 16 6 H 0.10 3.35 7.97 -2.39 -0.02 3.33 16 7 C -0.12 -3.46 6.46 31.78 0.21 -3.25 16 8 C -0.11 -3.21 7.08 31.98 0.23 -2.99 16 9 C 0.04 1.58 6.01 86.77 0.52 2.10 16 10 N -0.48 -21.22 4.57 -864.89 -3.95 -25.18 16 11 C 0.12 6.21 2.33 86.31 0.20 6.41 16 12 C 0.04 1.92 1.85 -52.93 -0.10 1.82 16 13 C -0.49 -27.27 8.74 25.60 0.22 -27.05 16 14 H 0.04 2.15 7.81 -2.91 -0.02 2.13 16 15 C 0.05 2.69 5.29 84.65 0.45 3.14 16 16 N -0.88 -46.57 10.26 21.45 0.22 -46.35 16 17 Si 0.95 43.03 29.54 68.60 2.03 45.05 16 18 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 19 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 20 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 21 C -0.22 -10.72 9.96 30.62 0.30 -10.42 16 22 C -0.20 -9.26 9.51 30.62 0.29 -8.97 16 23 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.41 10.31 8.71 -92.71 -0.81 9.50 16 27 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.06 1.80 7.77 -2.38 -0.02 1.78 16 29 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.02 0.81 7.42 -2.39 -0.02 0.80 16 32 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 33 H -0.01 -0.59 6.02 -2.39 -0.01 -0.60 16 34 H 0.10 5.33 4.24 -2.39 -0.01 5.32 16 35 H 0.25 12.75 8.32 -92.70 -0.77 11.98 16 36 H 0.06 3.02 8.14 -2.38 -0.02 3.00 16 37 H 0.07 3.61 8.14 -2.39 -0.02 3.59 16 38 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 39 H 0.07 3.21 8.04 -2.39 -0.02 3.20 16 Total: -1.00 -66.65 309.51 0.00 -66.65 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.23 Total: 25.15 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: 4.29 Total: -12.52 kcal Atomic # 7 Polarization: -90.07 SS G_CDS: -6.50 Total: -96.57 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.04 Total: -27.77 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -66.65 0.00 -66.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259379.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.163 kcal (2) G-P(sol) polarization free energy of solvation -66.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds