Wall clock time and date at job start Sun Mar 29 2020 23:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47437 * 2 1 4 4 C 1.53003 * 109.47325 * 120.00084 * 2 1 3 5 5 N 1.46899 * 109.46710 * 65.43316 * 4 2 1 6 6 C 1.46899 * 110.99978 * 209.19245 * 5 4 2 7 7 C 1.50702 * 109.47009 * 72.34882 * 6 5 4 8 8 H 1.08002 * 119.99964 * 5.12736 * 7 6 5 9 9 C 1.37878 * 119.99816 * 185.12783 * 7 6 5 10 10 N 1.31517 * 119.99644 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 120.00314 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47328 * 89.99680 * 11 9 7 13 13 H 1.48502 * 109.47378 * 210.00087 * 11 9 7 14 14 H 1.48504 * 109.47144 * 330.00001 * 11 9 7 15 15 C 1.46903 * 110.99641 * 85.24666 * 5 4 2 16 16 C 1.50706 * 109.46822 * 287.38952 * 15 5 4 17 17 N 1.30828 * 125.95752 * 99.81122 * 16 15 5 18 18 C 1.33245 * 109.82973 * 179.97438 * 17 16 15 19 19 N 1.30713 * 108.94302 * 0.02562 * 18 17 16 20 20 N 1.34422 * 125.96362 * 279.78660 * 16 15 5 21 21 C 1.46503 * 126.82301 * 0.02562 * 20 16 15 22 22 H 1.08997 * 109.46956 * 304.53157 * 1 2 3 23 23 H 1.09005 * 109.46800 * 64.52751 * 1 2 3 24 24 H 1.08999 * 109.47175 * 184.52764 * 1 2 3 25 25 H 1.09002 * 109.46985 * 239.99943 * 2 1 3 26 26 H 1.08994 * 109.47499 * 179.97438 * 3 2 1 27 27 H 1.09008 * 109.47194 * 300.00311 * 3 2 1 28 28 H 1.08998 * 109.47190 * 59.99525 * 3 2 1 29 29 H 1.09004 * 109.46445 * 305.44155 * 4 2 1 30 30 H 1.08999 * 109.47109 * 185.43789 * 4 2 1 31 31 H 1.08996 * 109.47148 * 192.35266 * 6 5 4 32 32 H 1.09007 * 109.47158 * 312.35174 * 6 5 4 33 33 H 0.96996 * 120.00045 * 180.02562 * 10 9 7 34 34 H 1.09001 * 109.47143 * 167.39552 * 15 5 4 35 35 H 1.08996 * 109.47356 * 47.39337 * 15 5 4 36 36 H 1.07999 * 125.52942 * 179.73734 * 18 17 16 37 37 H 1.08999 * 109.47144 * 89.99823 * 21 20 16 38 38 H 1.08996 * 109.47544 * 210.00278 * 21 20 16 39 39 H 1.09003 * 109.47225 * 330.00036 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6604 -2.1389 1.1854 6 6 1.4835 -2.6977 2.5323 7 6 0.2150 -2.1551 3.1387 8 1 -0.4406 -1.5303 2.5502 9 6 -0.1085 -2.4562 4.4447 10 7 -1.2153 -1.9822 4.9740 11 14 1.0257 -3.5362 5.4628 12 1 2.0192 -2.6859 6.1662 13 1 0.2261 -4.2918 6.4603 14 1 1.7334 -4.4897 4.5710 15 6 2.6457 -2.9137 0.4193 16 6 2.5119 -2.5875 -1.0459 17 7 3.2702 -1.7630 -1.7218 18 6 2.8680 -1.7165 -2.9912 19 7 1.8433 -2.5139 -3.1412 20 7 1.5929 -3.0933 -1.8866 21 6 0.5393 -4.0570 -1.5590 22 1 -0.3633 0.5825 0.8466 23 1 -0.3633 0.4420 -0.9278 24 1 -0.3633 -1.0244 0.0811 25 1 1.8933 -0.5139 -0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.5993 -0.2667 2.1365 30 1 3.1257 -0.6377 1.2992 31 1 1.4205 -3.7840 2.4696 32 1 2.3327 -2.4184 3.1560 33 1 -1.4428 -2.1937 5.8928 34 1 2.4690 -3.9784 0.5721 35 1 3.6502 -2.6599 0.7578 36 1 3.3133 -1.1137 -3.7689 37 1 -0.3582 -3.5224 -1.2477 38 1 0.3152 -4.6629 -2.4369 39 1 0.8768 -4.7029 -0.7484 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088572301.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:42:20 Heat of formation + Delta-G solvation = 95.011268 kcal Electronic energy + Delta-G solvation = -19716.499494 eV Core-core repulsion = 16889.464844 eV Total energy + Delta-G solvation = -2827.034650 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.95119 -37.59270 -34.28832 -33.63607 -32.63794 -31.30725 -28.30835 -27.12846 -26.55708 -26.31407 -23.88637 -21.75020 -20.83423 -20.02998 -19.40235 -16.98145 -16.64935 -15.89715 -14.98304 -14.77781 -14.45214 -14.27751 -13.84140 -13.66182 -13.26160 -12.95490 -12.88544 -12.52131 -12.40842 -11.96531 -11.69746 -11.49864 -11.48145 -11.07816 -10.78309 -10.67897 -10.34983 -10.21504 -10.00257 -9.89526 -9.79009 -9.41216 -9.37869 -9.01201 -8.63918 -7.59279 -6.11078 -4.09048 1.84063 2.56281 3.13701 3.22659 3.30503 3.31633 4.26936 4.35342 4.67370 4.80710 5.01977 5.20148 5.27495 5.34298 5.49986 5.58238 5.64830 5.76015 5.78066 5.82085 6.03557 6.17001 6.35943 6.42205 6.42886 6.47705 6.53079 6.65647 6.68349 6.71295 6.83682 6.94900 7.02681 7.11881 7.49821 7.75883 7.86789 8.34503 8.57017 9.01010 9.50083 11.01768 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.023742 B = 0.007152 C = 0.006397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.042856 B = 3913.906779 C = 4375.857523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.101 4.101 3 C -0.140 4.140 4 C 0.068 3.932 5 N -0.521 5.521 6 C 0.165 3.835 7 C -0.508 4.508 8 H 0.085 0.915 9 C 0.070 3.930 10 N -0.897 5.897 11 Si 0.873 3.127 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.268 1.268 15 C 0.120 3.880 16 C 0.307 3.693 17 N -0.546 5.546 18 C 0.192 3.808 19 N -0.332 5.332 20 N -0.365 5.365 21 C 0.101 3.899 22 H 0.050 0.950 23 H 0.029 0.971 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.050 0.950 29 H 0.086 0.914 30 H 0.029 0.971 31 H 0.027 0.973 32 H -0.010 1.010 33 H 0.264 0.736 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.211 0.789 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.817 -1.519 -11.172 13.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.120 4.120 3 C -0.198 4.198 4 C -0.060 4.060 5 N -0.245 5.245 6 C 0.039 3.961 7 C -0.546 4.546 8 H 0.103 0.897 9 C -0.132 4.132 10 N -0.536 5.536 11 Si 0.700 3.300 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.193 1.193 15 C -0.011 4.011 16 C 0.031 3.969 17 N -0.275 5.275 18 C -0.111 4.111 19 N -0.161 5.161 20 N -0.154 5.154 21 C -0.041 4.041 22 H 0.069 0.931 23 H 0.048 0.952 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.104 0.896 30 H 0.047 0.953 31 H 0.045 0.955 32 H 0.008 0.992 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.227 0.773 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.065 -1.567 -11.758 13.322 hybrid contribution 1.133 -0.548 1.191 1.733 sum 7.198 -2.115 -10.566 12.959 Atomic orbital electron populations 1.21661 0.95209 1.02577 0.99407 1.21336 0.96189 0.95091 0.99368 1.21742 1.00399 0.96762 1.00849 1.22157 0.96956 0.88009 0.98849 1.61876 1.42393 1.02114 1.18143 1.20244 0.97031 0.95227 0.83582 1.20994 1.04906 1.31753 0.96975 0.89738 1.24888 0.95078 0.95716 0.97518 1.69884 1.23951 1.45151 1.14621 0.86911 0.81140 0.81290 0.80627 1.20330 1.21213 1.19299 1.20678 0.97053 0.99367 0.83996 1.24258 0.86366 0.90934 0.95341 1.70493 1.30493 1.21998 1.04517 1.25800 0.93032 0.97809 0.94460 1.77968 1.20336 1.16074 1.01713 1.50112 1.25154 1.34021 1.06157 1.21931 0.89402 0.90803 1.01970 0.93115 0.95159 0.91536 0.90426 0.93222 0.93615 0.93078 0.89599 0.95291 0.95515 0.99214 0.92621 0.89158 0.91576 0.77278 0.89467 0.89768 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 9.14 37.16 0.34 -2.06 16 2 C -0.10 -1.75 2.85 -90.62 -0.26 -2.01 16 3 C -0.14 -2.14 9.19 37.16 0.34 -1.80 16 4 C 0.07 1.28 4.20 -3.82 -0.02 1.26 16 5 N -0.52 -9.84 3.74 -237.51 -0.89 -10.73 16 6 C 0.16 3.61 3.75 -4.98 -0.02 3.59 16 7 C -0.51 -13.37 8.89 -34.44 -0.31 -13.68 16 8 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 9 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 10 N -0.90 -26.37 13.96 55.43 0.77 -25.60 16 11 Si 0.87 20.36 27.37 -169.99 -4.65 15.71 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.27 -5.91 6.69 56.52 0.38 -5.53 16 15 C 0.12 1.91 5.16 -4.97 -0.03 1.89 16 16 C 0.31 4.89 5.46 -155.70 -0.85 4.04 16 17 N -0.55 -8.78 9.62 -11.97 -0.12 -8.89 16 18 C 0.19 2.76 12.73 -91.81 -1.17 1.59 16 19 N -0.33 -5.16 12.70 29.29 0.37 -4.79 16 20 N -0.36 -5.52 4.04 -65.10 -0.26 -5.78 16 21 C 0.10 1.22 11.33 59.85 0.68 1.90 16 22 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.07 1.33 7.65 -51.93 -0.40 0.93 16 25 H 0.08 1.38 3.80 -51.93 -0.20 1.18 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.09 1.83 7.07 -51.93 -0.37 1.46 16 30 H 0.03 0.52 7.59 -51.93 -0.39 0.13 16 31 H 0.03 0.57 7.12 -51.93 -0.37 0.20 16 32 H -0.01 -0.22 7.19 -51.92 -0.37 -0.59 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.09 1.27 7.03 -51.93 -0.36 0.91 16 35 H 0.07 1.03 7.73 -51.93 -0.40 0.63 16 36 H 0.21 2.18 8.06 -52.49 -0.42 1.76 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.09 0.99 7.32 -51.93 -0.38 0.61 16 LS Contribution 314.42 15.07 4.74 4.74 Total: -1.00 -30.23 314.42 -7.63 -37.85 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -6.21 Total: 0.95 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -1.38 Total: -3.46 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: -0.12 Total: -55.79 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.65 Total: 15.71 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.23 -7.63 -37.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088572301.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.865 kcal (2) G-P(sol) polarization free energy of solvation -30.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds