Wall clock time and date at job start Sun Mar 29 2020 23:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46839 * 2 1 4 4 C 1.36938 * 120.00037 * 84.21578 * 3 2 1 5 5 H 1.07997 * 119.99949 * 169.78982 * 4 3 2 6 6 C 1.38812 * 120.00208 * 349.78700 * 4 3 2 7 7 N 1.31621 * 119.99644 * 2.08663 * 6 4 3 8 8 Si 1.86794 * 120.00298 * 182.08482 * 6 4 3 9 9 H 1.48501 * 109.46847 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47629 * 120.00046 * 8 6 4 11 11 H 1.48503 * 109.46954 * 240.00206 * 8 6 4 12 12 C 1.46503 * 119.99951 * 264.21130 * 3 2 1 13 13 C 1.50694 * 109.47425 * 271.49896 * 12 3 2 14 14 N 1.30835 * 125.96478 * 84.19479 * 13 12 3 15 15 C 1.33234 * 109.83044 * 180.12553 * 14 13 12 16 16 N 1.30717 * 108.95000 * 359.59730 * 15 14 13 17 17 N 1.34438 * 125.95908 * 263.87414 * 13 12 3 18 18 C 1.46493 * 126.82609 * 359.97438 * 17 13 12 19 19 C 1.53005 * 109.46859 * 265.09146 * 18 17 13 20 20 C 1.53004 * 109.47094 * 175.48579 * 19 18 17 21 21 C 1.52999 * 109.46757 * 295.48368 * 19 18 17 22 22 H 1.08998 * 109.47597 * 307.30819 * 1 2 3 23 23 H 1.08999 * 109.47386 * 67.31239 * 1 2 3 24 24 H 1.09005 * 109.46895 * 187.31275 * 1 2 3 25 25 H 1.09002 * 109.47153 * 240.00122 * 2 1 3 26 26 H 1.09004 * 109.46996 * 119.99637 * 2 1 3 27 27 H 0.96998 * 119.99622 * 180.02562 * 7 6 4 28 28 H 1.09007 * 109.46906 * 151.49676 * 12 3 2 29 29 H 1.08999 * 109.46631 * 31.50249 * 12 3 2 30 30 H 1.08005 * 125.52456 * 179.85529 * 15 14 13 31 31 H 1.09003 * 109.47357 * 25.08271 * 18 17 13 32 32 H 1.08994 * 109.47496 * 145.08978 * 18 17 13 33 33 H 1.08993 * 109.47427 * 55.48369 * 19 18 17 34 34 H 1.08993 * 109.47155 * 59.99623 * 20 19 18 35 35 H 1.08995 * 109.46909 * 179.97438 * 20 19 18 36 36 H 1.09003 * 109.46819 * 299.99742 * 20 19 18 37 37 H 1.08998 * 109.47682 * 60.00253 * 21 19 18 38 38 H 1.09007 * 109.46968 * 180.02562 * 21 19 18 39 39 H 1.09004 * 109.47036 * 299.99691 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1338 2.0666 1.1799 5 1 2.6443 3.0180 1.2039 6 6 1.5947 1.5386 2.3450 7 7 1.0086 0.3603 2.3238 8 14 1.7011 2.5002 3.9429 9 1 2.4038 3.7859 3.7009 10 1 0.3319 2.7715 4.4495 11 1 2.4530 1.7073 4.9485 12 6 2.3831 2.0292 -1.2623 13 6 3.8314 1.7495 -1.5704 14 7 4.2983 0.6811 -2.1640 15 6 5.6236 0.7660 -2.2706 16 7 6.0195 1.8985 -1.7517 17 7 4.8686 2.5570 -1.2886 18 6 4.8100 3.8645 -0.6306 19 6 4.7637 4.9671 -1.6904 20 6 4.5892 6.3247 -1.0066 21 6 6.0689 4.9622 -2.4887 22 1 -0.3634 0.6228 0.8174 23 1 -0.3634 0.3964 -0.9481 24 1 -0.3633 -1.0194 0.1308 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8901 27 1 0.6316 -0.0086 3.1378 28 1 2.2312 3.1052 -1.1755 29 1 1.7585 1.6378 -2.0653 30 1 6.2662 0.0218 -2.7175 31 1 3.9155 3.9193 -0.0101 32 1 5.6938 3.9972 -0.0066 33 1 3.9253 4.7890 -2.3637 34 1 5.4276 6.5028 -0.3333 35 1 4.5567 7.1102 -1.7615 36 1 3.6594 6.3282 -0.4378 37 1 6.1933 3.9951 -2.9759 38 1 6.0361 5.7481 -3.2434 39 1 6.9074 5.1404 -1.8153 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088593066.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:54:38 Heat of formation + Delta-G solvation = 110.801362 kcal Electronic energy + Delta-G solvation = -19571.006801 eV Core-core repulsion = 16744.656861 eV Total energy + Delta-G solvation = -2826.349940 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.42251 -36.55963 -36.11864 -32.32209 -31.88332 -30.38771 -29.09805 -27.15246 -26.71114 -25.66978 -23.36222 -21.49016 -20.83539 -20.35877 -19.29667 -16.76042 -16.47667 -15.56650 -15.22895 -14.88064 -14.05817 -13.78287 -13.70635 -13.27755 -13.08358 -13.06414 -12.39382 -12.18594 -12.01242 -11.77262 -11.40123 -11.31816 -11.03171 -11.01687 -10.93637 -10.72412 -10.70710 -10.42521 -10.01826 -9.68654 -9.55856 -9.31127 -9.06582 -8.83838 -8.42364 -7.00802 -5.70794 -3.25688 2.27829 2.90172 3.30484 3.35304 3.38809 3.62111 4.39285 4.75348 4.80112 4.87863 5.00082 5.24218 5.30778 5.49910 5.50497 5.58873 5.61288 5.73018 5.78559 5.86166 5.93354 6.03804 6.24246 6.32421 6.33643 6.36550 6.72804 6.93101 7.06856 7.10822 7.17091 7.29929 7.49319 7.53664 7.90883 8.15565 8.39384 8.81703 9.17157 9.73696 10.16826 11.19148 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.018704 B = 0.008166 C = 0.006478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.639819 B = 3427.916443 C = 4321.125887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.165 3.835 3 N -0.582 5.582 4 C -0.253 4.253 5 H 0.072 0.928 6 C -0.001 4.001 7 N -0.898 5.898 8 Si 0.910 3.090 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.291 1.291 12 C 0.217 3.783 13 C 0.283 3.717 14 N -0.552 5.552 15 C 0.185 3.815 16 N -0.342 5.342 17 N -0.370 5.370 18 C 0.132 3.868 19 C -0.111 4.111 20 C -0.144 4.144 21 C -0.143 4.143 22 H 0.082 0.918 23 H 0.000 1.000 24 H 0.022 0.978 25 H 0.010 0.990 26 H 0.099 0.901 27 H 0.250 0.750 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.205 0.795 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.050 0.950 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.153 7.672 -6.929 11.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.041 3.959 3 N -0.302 5.302 4 C -0.382 4.382 5 H 0.090 0.910 6 C -0.198 4.198 7 N -0.545 5.545 8 Si 0.740 3.260 9 H -0.205 1.205 10 H -0.215 1.215 11 H -0.218 1.218 12 C 0.084 3.916 13 C 0.004 3.996 14 N -0.280 5.280 15 C -0.118 4.118 16 N -0.171 5.171 17 N -0.160 5.160 18 C 0.009 3.991 19 C -0.130 4.130 20 C -0.202 4.202 21 C -0.201 4.201 22 H 0.100 0.900 23 H 0.019 0.981 24 H 0.041 0.959 25 H 0.028 0.972 26 H 0.117 0.883 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.221 0.779 31 H 0.124 0.876 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.604 7.604 -6.785 11.630 hybrid contribution 0.123 0.426 1.019 1.111 sum 5.727 8.030 -5.766 11.425 Atomic orbital electron populations 1.22282 0.98931 0.99190 0.98594 1.21079 0.92473 0.83334 0.99044 1.44232 1.73343 1.12185 1.00461 1.19306 1.30791 1.02232 0.85868 0.91043 1.24862 0.99408 0.97283 0.98219 1.70276 1.41638 1.16504 1.26044 0.86103 0.77362 0.78969 0.83577 1.20516 1.21487 1.21753 1.19416 0.83546 0.97653 0.90971 1.26829 0.95731 0.86203 0.90854 1.70488 1.09532 1.23839 1.24182 1.25749 0.91846 0.95147 0.99044 1.77815 1.08214 1.09902 1.21173 1.50269 1.04374 1.16408 1.44914 1.21904 1.04933 0.77907 0.94348 1.21502 0.99456 0.94695 0.97367 1.21769 1.02296 0.95522 1.00627 1.21811 0.96421 1.02098 0.99726 0.89976 0.98065 0.95899 0.97154 0.88287 0.93817 0.91410 0.90556 0.77901 0.87581 0.89449 0.90693 0.92422 0.92224 0.91940 0.91892 0.93128 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 9.29 37.16 0.35 -2.71 16 2 C 0.16 4.04 5.70 -4.04 -0.02 4.02 16 3 N -0.58 -13.85 2.52 -174.61 -0.44 -14.30 16 4 C -0.25 -6.38 9.77 -15.06 -0.15 -6.53 16 5 H 0.07 1.71 6.23 -52.49 -0.33 1.38 16 6 C 0.00 -0.02 5.21 -17.43 -0.09 -0.11 16 7 N -0.90 -24.22 7.34 55.49 0.41 -23.82 16 8 Si 0.91 20.78 29.55 -169.99 -5.02 15.76 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 C 0.22 4.33 5.84 -5.20 -0.03 4.30 16 13 C 0.28 5.69 7.57 -155.69 -1.18 4.51 16 14 N -0.55 -11.36 11.19 -11.97 -0.13 -11.50 16 15 C 0.19 3.36 13.03 -91.82 -1.20 2.16 16 16 N -0.34 -6.37 11.45 29.29 0.34 -6.03 16 17 N -0.37 -6.81 3.30 -58.34 -0.19 -7.00 16 18 C 0.13 2.01 5.58 -4.04 -0.02 1.99 16 19 C -0.11 -1.37 3.13 -90.62 -0.28 -1.66 16 20 C -0.14 -1.47 9.19 37.16 0.34 -1.12 16 21 C -0.14 -1.76 9.00 37.16 0.33 -1.43 16 22 H 0.08 2.12 6.15 -51.93 -0.32 1.81 16 23 H 0.00 0.01 8.14 -51.93 -0.42 -0.42 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.01 0.24 8.03 -51.93 -0.42 -0.17 16 26 H 0.10 2.74 5.89 -51.93 -0.31 2.44 16 27 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 28 H 0.07 1.22 7.25 -51.93 -0.38 0.84 16 29 H 0.08 1.46 8.08 -51.93 -0.42 1.04 16 30 H 0.20 2.83 8.06 -52.48 -0.42 2.41 16 31 H 0.11 1.70 5.75 -51.93 -0.30 1.40 16 32 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.92 6.71 -51.93 -0.35 0.57 16 38 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 313.73 15.07 4.73 4.73 Total: -1.00 -28.85 313.73 -8.45 -37.30 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -6.17 Total: 1.44 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -1.95 Total: 3.42 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: -0.02 Total: -62.64 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.85 -8.45 -37.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088593066.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.101 kcal (2) G-P(sol) polarization free energy of solvation -28.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds