Wall clock time and date at job start Sun Mar 29 2020 23:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46963 * 2 1 4 4 N 1.46504 * 109.47117 * 183.61102 * 3 2 1 5 5 C 1.36934 * 119.99964 * 275.01801 * 4 3 2 6 6 H 1.07998 * 120.00143 * 145.33269 * 5 4 3 7 7 C 1.38814 * 120.00440 * 325.33774 * 5 4 3 8 8 N 1.31619 * 120.00722 * 156.36823 * 7 5 4 9 9 Si 1.86807 * 119.99653 * 336.36867 * 7 5 4 10 10 H 1.48504 * 109.46915 * 95.43095 * 9 7 5 11 11 H 1.48493 * 109.47124 * 215.43016 * 9 7 5 12 12 H 1.48496 * 109.47232 * 335.43391 * 9 7 5 13 13 C 1.46495 * 119.99873 * 95.01661 * 4 3 2 14 14 C 1.50695 * 109.47289 * 270.95457 * 13 4 3 15 15 N 1.30834 * 125.96395 * 85.26535 * 14 13 4 16 16 C 1.33236 * 109.83062 * 180.12510 * 15 14 13 17 17 N 1.30713 * 108.94808 * 359.58406 * 16 15 14 18 18 N 1.34436 * 125.96279 * 264.92995 * 14 13 4 19 19 C 1.46495 * 126.82195 * 0.02562 * 18 14 13 20 20 C 1.52997 * 109.47078 * 264.62283 * 19 18 14 21 21 C 1.53001 * 109.47127 * 184.62440 * 20 19 18 22 22 H 1.08995 * 109.47126 * 304.71859 * 1 2 3 23 23 H 1.09003 * 109.46619 * 64.71516 * 1 2 3 24 24 H 1.08993 * 109.47100 * 184.71261 * 1 2 3 25 25 H 1.08996 * 109.47405 * 240.00414 * 2 1 3 26 26 H 1.09004 * 109.47193 * 119.99644 * 2 1 3 27 27 H 1.09002 * 109.46989 * 63.61571 * 3 2 1 28 28 H 1.08999 * 109.47382 * 303.61064 * 3 2 1 29 29 H 0.96994 * 120.00334 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.46828 * 150.95297 * 13 4 3 31 31 H 1.09003 * 109.47229 * 30.95629 * 13 4 3 32 32 H 1.08001 * 125.52271 * 179.85060 * 16 15 14 33 33 H 1.09001 * 109.47086 * 24.62387 * 19 18 14 34 34 H 1.09003 * 109.47372 * 144.62019 * 19 18 14 35 35 H 1.08997 * 109.47244 * 304.62082 * 20 19 18 36 36 H 1.09003 * 109.47237 * 64.62763 * 20 19 18 37 37 H 1.09006 * 109.47214 * 184.72649 * 21 20 19 38 38 H 1.09004 * 109.47034 * 304.71804 * 21 20 19 39 39 H 1.08998 * 109.47239 * 64.72113 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5024 1.4435 -0.0870 5 6 4.2560 1.3155 1.0492 6 1 5.1923 0.7782 1.0184 7 6 3.8164 1.8761 2.2405 8 7 4.2433 1.3978 3.3901 9 14 2.6187 3.3094 2.2123 10 1 1.2323 2.7991 2.3629 11 1 2.9293 4.2360 3.3304 12 1 2.7424 4.0325 0.9212 13 6 4.1586 1.5814 -1.3895 14 6 4.3542 0.2178 -2.0003 15 7 3.4732 -0.4401 -2.7093 16 6 3.9813 -1.6125 -3.0869 17 7 5.2013 -1.7136 -2.6288 18 7 5.4668 -0.5323 -1.9173 19 6 6.7093 -0.1860 -1.2227 20 6 7.6965 0.4263 -2.2183 21 6 9.0334 0.6816 -1.5194 22 1 -0.3633 0.5853 0.8447 23 1 -0.3633 0.4390 -0.9293 24 1 -0.3633 -1.0241 0.0844 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.7305 1.9373 0.9206 28 1 1.6248 1.9748 -0.8558 29 1 3.9363 1.7898 4.2225 30 1 5.1275 2.0635 -1.2589 31 1 3.5365 2.1884 -2.0473 32 1 3.4696 -2.3566 -3.6793 33 1 6.4955 0.5345 -0.4332 34 1 7.1442 -1.0851 -0.7860 35 1 7.8471 -0.2615 -3.0503 36 1 7.2969 1.3685 -2.5934 37 1 9.7093 1.1941 -2.2040 38 1 8.8700 1.3018 -0.6380 39 1 9.4733 -0.2691 -1.2182 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088593072.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:44:31 Heat of formation + Delta-G solvation = 99.630192 kcal Electronic energy + Delta-G solvation = -19548.499883 eV Core-core repulsion = 16721.665525 eV Total energy + Delta-G solvation = -2826.834358 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.49311 -36.58695 -35.43821 -32.66781 -32.07878 -31.59472 -30.39658 -27.07525 -26.06032 -25.53738 -22.30805 -22.02161 -21.05904 -20.68470 -19.58665 -16.83836 -16.52170 -15.70097 -15.16412 -15.08219 -14.37451 -14.09919 -13.81980 -13.56991 -13.15437 -13.00584 -12.68875 -12.35986 -12.21939 -12.09974 -11.67511 -11.45151 -11.38458 -11.26368 -10.95422 -10.68534 -10.59134 -10.44065 -10.18017 -9.76089 -9.48926 -9.38497 -9.10981 -9.03547 -8.53159 -7.10322 -6.12084 -3.54104 2.20188 2.85219 3.27440 3.41846 3.46123 3.51262 4.43107 4.75170 4.86580 4.92361 4.97797 5.15766 5.24490 5.27924 5.50513 5.64257 5.67473 5.80511 5.81390 5.84883 5.99970 6.05205 6.11448 6.18359 6.22016 6.25626 6.33328 6.51112 6.58493 6.68176 6.84941 7.00835 7.06259 7.24079 7.41311 7.88125 8.18770 8.71098 8.79789 9.56292 9.93268 11.02168 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.017666 B = 0.009077 C = 0.006677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.588171 B = 3083.840197 C = 4192.329054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.143 4.143 3 C 0.141 3.859 4 N -0.589 5.589 5 C -0.283 4.283 6 H 0.078 0.922 7 C 0.044 3.956 8 N -0.892 5.892 9 Si 0.883 3.117 10 H -0.284 1.284 11 H -0.302 1.302 12 H -0.268 1.268 13 C 0.214 3.786 14 C 0.285 3.715 15 N -0.550 5.550 16 C 0.186 3.814 17 N -0.342 5.342 18 N -0.368 5.368 19 C 0.124 3.876 20 C -0.135 4.135 21 C -0.149 4.149 22 H 0.045 0.955 23 H 0.047 0.953 24 H 0.044 0.956 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.047 0.953 28 H 0.045 0.955 29 H 0.265 0.735 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.206 0.794 33 H 0.114 0.886 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.386 -0.328 -9.850 10.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.183 4.183 3 C 0.016 3.984 4 N -0.310 5.310 5 C -0.410 4.410 6 H 0.095 0.905 7 C -0.158 4.158 8 N -0.531 5.531 9 Si 0.713 3.287 10 H -0.212 1.212 11 H -0.231 1.231 12 H -0.193 1.193 13 C 0.083 3.917 14 C 0.006 3.994 15 N -0.279 5.279 16 C -0.117 4.117 17 N -0.171 5.171 18 N -0.157 5.157 19 C 0.002 3.998 20 C -0.174 4.174 21 C -0.207 4.207 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.222 0.778 33 H 0.132 0.868 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.623 -0.779 -9.783 10.159 hybrid contribution -0.657 0.530 0.314 0.900 sum 1.967 -0.249 -9.469 9.674 Atomic orbital electron populations 1.21708 0.97451 1.00487 1.00708 1.22016 0.93713 0.99873 1.02685 1.21250 0.83285 0.94908 0.98909 1.44107 1.01120 1.84223 1.01512 1.18663 1.06060 1.30741 0.85573 0.90484 1.25300 0.97775 0.97651 0.95047 1.69884 1.46033 1.39965 0.97254 0.86871 0.80569 0.84058 0.77185 1.21212 1.23074 1.19298 1.19475 0.99172 0.85309 0.87703 1.26340 0.82339 0.98144 0.92596 1.70449 1.31417 1.06789 1.19275 1.25744 0.90454 0.95754 0.99742 1.77849 1.18769 1.04693 1.15742 1.50288 1.13172 1.12660 1.39590 1.21957 0.81099 1.02172 0.94557 1.21877 0.95506 1.01322 0.98702 1.21689 0.95951 1.02018 1.00998 0.93580 0.93381 0.93698 0.91141 0.92245 0.93499 0.93675 0.92495 0.90301 0.90485 0.77797 0.86847 0.89343 0.91557 0.91420 0.92328 0.91758 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.91 37.16 0.37 -2.15 16 2 C -0.14 -2.98 6.23 -26.73 -0.17 -3.14 16 3 C 0.14 3.05 4.73 -4.04 -0.02 3.03 16 4 N -0.59 -13.21 2.12 -174.61 -0.37 -13.58 16 5 C -0.28 -7.28 9.90 -15.06 -0.15 -7.43 16 6 H 0.08 2.09 6.42 -52.49 -0.34 1.76 16 7 C 0.04 1.20 5.32 -17.43 -0.09 1.11 16 8 N -0.89 -25.88 13.97 55.49 0.78 -25.10 16 9 Si 0.88 21.35 25.00 -169.99 -4.25 17.10 16 10 H -0.28 -6.81 6.67 56.52 0.38 -6.44 16 11 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 13 C 0.21 4.04 5.89 -5.20 -0.03 4.01 16 14 C 0.29 5.45 7.36 -155.69 -1.15 4.30 16 15 N -0.55 -10.53 9.84 -11.97 -0.12 -10.64 16 16 C 0.19 3.24 13.03 -91.82 -1.20 2.04 16 17 N -0.34 -6.35 12.70 29.29 0.37 -5.98 16 18 N -0.37 -6.73 3.64 -58.34 -0.21 -6.94 16 19 C 0.12 1.94 6.19 -4.05 -0.03 1.92 16 20 C -0.14 -1.70 6.26 -26.73 -0.17 -1.87 16 21 C -0.15 -1.56 9.91 37.16 0.37 -1.19 16 22 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.07 1.49 6.51 -51.93 -0.34 1.16 16 26 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 27 H 0.05 1.10 2.78 -51.93 -0.14 0.96 16 28 H 0.04 0.88 7.85 -51.93 -0.41 0.48 16 29 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.08 1.37 7.29 -51.93 -0.38 0.99 16 31 H 0.08 1.33 7.87 -51.93 -0.41 0.92 16 32 H 0.21 2.69 8.06 -52.49 -0.42 2.27 16 33 H 0.11 1.91 5.71 -51.93 -0.30 1.62 16 34 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 315.10 15.07 4.75 4.75 Total: -1.00 -30.27 315.10 -7.43 -37.70 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.12 Total: 2.05 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -2.26 Total: 0.64 kcal Atomic # 7 Polarization: -62.69 SS G_CDS: 0.45 Total: -62.24 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.25 Total: 17.10 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.27 -7.43 -37.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088593072.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.330 kcal (2) G-P(sol) polarization free energy of solvation -30.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds