Wall clock time and date at job start Sun Mar 29 2020 23:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47077 * 2 1 4 4 N 1.46498 * 109.47590 * 120.00443 * 2 1 3 5 5 N 1.40448 * 126.82060 * 300.00005 * 4 2 1 6 6 C 1.30708 * 106.79137 * 179.97438 * 5 4 2 7 7 N 1.33233 * 108.95078 * 0.02562 * 6 5 4 8 8 C 1.30834 * 109.82996 * 359.97438 * 7 6 5 9 9 C 1.50695 * 125.96516 * 179.73851 * 8 7 6 10 10 N 1.46903 * 109.47021 * 90.02494 * 9 8 7 11 11 C 1.46905 * 111.00089 * 293.95530 * 10 9 8 12 12 C 1.46903 * 110.99923 * 170.00229 * 10 9 8 13 13 H 1.08998 * 109.46940 * 60.00070 * 12 10 9 14 14 C 1.52998 * 109.47249 * 299.99940 * 12 10 9 15 15 C 1.50698 * 109.46827 * 180.02562 * 12 10 9 16 16 H 1.08002 * 120.00487 * 359.97438 * 15 12 10 17 17 C 1.37884 * 119.99887 * 180.02562 * 15 12 10 18 18 N 1.31510 * 119.99891 * 359.97438 * 17 15 12 19 19 Si 1.86801 * 120.00073 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47120 * 59.99483 * 19 17 15 21 21 H 1.48503 * 109.46944 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46723 * 299.99564 * 19 17 15 23 23 H 1.09007 * 109.46851 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47096 * 299.99583 * 1 2 3 25 25 H 1.08995 * 109.46971 * 59.99783 * 1 2 3 26 26 H 1.09008 * 109.47261 * 240.00126 * 2 1 3 27 27 H 1.08998 * 109.47369 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47319 * 299.99805 * 3 2 1 29 29 H 1.09000 * 109.47273 * 60.00524 * 3 2 1 30 30 H 1.08008 * 125.52317 * 179.97438 * 6 5 4 31 31 H 1.08991 * 109.47686 * 210.02392 * 9 8 7 32 32 H 1.09002 * 109.47441 * 330.02801 * 9 8 7 33 33 H 1.08997 * 109.47164 * 59.99875 * 11 10 9 34 34 H 1.08995 * 109.47172 * 180.02562 * 11 10 9 35 35 H 1.08997 * 109.46950 * 299.99876 * 11 10 9 36 36 H 1.08994 * 109.47060 * 180.02562 * 14 12 10 37 37 H 1.09003 * 109.46884 * 300.00562 * 14 12 10 38 38 H 1.08998 * 109.47126 * 59.99981 * 14 12 10 39 39 H 0.96998 * 119.99987 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 7 1.7691 -0.3380 2.5325 6 6 2.3891 -1.2157 3.2766 7 7 3.0088 -2.0918 2.4869 8 6 2.7942 -1.7880 1.2326 9 6 3.3288 -2.5339 0.0373 10 7 2.3749 -3.5806 -0.3534 11 6 2.2720 -4.6137 0.6859 12 6 2.7419 -4.1707 -1.6477 13 1 3.7359 -4.6123 -1.5769 14 6 2.7430 -3.0819 -2.7227 15 6 1.7426 -5.2373 -2.0148 16 1 0.9177 -5.4554 -1.3527 17 6 1.8821 -5.9356 -3.1956 18 7 2.8868 -5.6704 -4.0016 19 14 0.6431 -7.2573 -3.6510 20 1 -0.7105 -6.6544 -3.7484 21 1 1.0141 -7.8538 -4.9593 22 1 0.6405 -8.3139 -2.6075 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 2.3982 -1.2283 4.3566 31 1 3.4668 -1.8402 -0.7920 32 1 4.2852 -2.9906 0.2919 33 1 1.9313 -4.1601 1.6166 34 1 1.5599 -5.3763 0.3709 35 1 3.2490 -5.0714 0.8412 36 1 3.0148 -3.5199 -3.6830 37 1 1.7490 -2.6402 -2.7934 38 1 3.4655 -2.3101 -2.4573 39 1 2.9847 -6.1614 -4.8324 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088593111.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:50:18 Heat of formation + Delta-G solvation = 92.962109 kcal Electronic energy + Delta-G solvation = -19439.416964 eV Core-core repulsion = 16612.293457 eV Total energy + Delta-G solvation = -2827.123508 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.83073 -37.10727 -35.91868 -33.07702 -31.18627 -30.68916 -29.14779 -27.35831 -27.28008 -24.81262 -23.65407 -23.04942 -20.84283 -20.01837 -19.23950 -16.96384 -16.31637 -15.67508 -15.06945 -14.64999 -14.32820 -14.16048 -13.87549 -13.76629 -13.07277 -12.77236 -12.56973 -12.31684 -12.26816 -12.06495 -11.62608 -11.43534 -11.13604 -11.04361 -10.91745 -10.79052 -10.72124 -10.26078 -10.11928 -9.96748 -9.65500 -9.41706 -9.25792 -8.96119 -8.47806 -7.35299 -6.07509 -4.12015 1.91586 2.55001 3.23968 3.29411 3.33803 3.37081 4.34437 4.44884 4.54705 4.90033 4.94534 5.06510 5.16377 5.22010 5.28354 5.50270 5.59664 5.70330 5.76312 5.87739 5.96333 6.13131 6.22290 6.26677 6.44269 6.59406 6.68102 6.74939 6.83734 6.90373 7.02662 7.12040 7.39481 7.57062 7.75638 8.05533 8.21175 8.44128 8.46403 8.93371 9.53144 10.99403 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.027733 B = 0.005984 C = 0.005567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.397103 B = 4677.733406 C = 5028.507072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.152 3.848 3 C -0.159 4.159 4 N -0.361 5.361 5 N -0.330 5.330 6 C 0.189 3.811 7 N -0.549 5.549 8 C 0.305 3.695 9 C 0.119 3.881 10 N -0.531 5.531 11 C 0.038 3.962 12 C 0.213 3.787 13 H 0.004 0.996 14 C -0.136 4.136 15 C -0.505 4.505 16 H 0.064 0.936 17 C 0.061 3.939 18 N -0.893 5.893 19 Si 0.897 3.103 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.112 0.888 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.210 0.790 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.016 0.984 36 H 0.089 0.911 37 H 0.035 0.965 38 H 0.007 0.993 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.000 10.819 6.596 12.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.049 3.951 3 C -0.217 4.217 4 N -0.152 5.152 5 N -0.158 5.158 6 C -0.114 4.114 7 N -0.278 5.278 8 C 0.028 3.972 9 C -0.012 4.012 10 N -0.257 5.257 11 C -0.110 4.110 12 C 0.108 3.892 13 H 0.021 0.979 14 C -0.194 4.194 15 C -0.543 4.543 16 H 0.082 0.918 17 C -0.141 4.141 18 N -0.532 5.532 19 Si 0.725 3.275 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.130 0.870 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.227 0.773 31 H 0.112 0.888 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.035 0.965 36 H 0.107 0.893 37 H 0.055 0.945 38 H 0.026 0.974 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.642 11.348 6.672 13.266 hybrid contribution 0.150 -1.131 -0.295 1.178 sum -1.493 10.217 6.377 12.136 Atomic orbital electron populations 1.22061 0.92962 1.03638 1.02716 1.21441 0.96140 0.93458 0.84025 1.22130 1.01588 0.94718 1.03240 1.50448 1.37444 1.21774 1.05499 1.77859 1.25560 1.25249 0.87167 1.25814 0.94600 0.90051 1.00911 1.70506 1.28406 1.29008 0.99837 1.24455 0.90737 0.86884 0.95087 1.20673 0.94830 0.95416 0.90240 1.62204 1.45963 1.12595 1.04954 1.22244 1.00251 0.94897 0.93655 1.19292 0.95429 0.92116 0.82387 0.97889 1.21911 0.97943 0.96566 1.02985 1.21066 1.10804 1.17489 1.04939 0.91826 1.24908 0.95668 0.97265 0.96230 1.69864 1.29995 1.41477 1.11859 0.86568 0.81532 0.81781 0.77584 1.20245 1.21321 1.20280 0.91273 0.91737 0.90759 0.86997 0.92269 0.90561 0.91396 0.77348 0.88789 0.92076 0.93215 0.90476 0.96493 0.89277 0.94545 0.97405 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.47 37.16 0.35 -1.59 16 2 C 0.15 2.01 3.68 -67.93 -0.25 1.76 16 3 C -0.16 -1.70 9.47 37.16 0.35 -1.35 16 4 N -0.36 -5.75 3.28 -51.88 -0.17 -5.92 16 5 N -0.33 -5.29 12.60 29.29 0.37 -4.92 16 6 C 0.19 2.89 13.03 -91.82 -1.20 1.70 16 7 N -0.55 -9.68 10.46 -11.97 -0.13 -9.80 16 8 C 0.31 5.33 6.61 -155.69 -1.03 4.30 16 9 C 0.12 2.15 4.94 -4.98 -0.02 2.12 16 10 N -0.53 -11.07 4.61 -237.73 -1.10 -12.16 16 11 C 0.04 0.78 9.09 60.07 0.55 1.33 16 12 C 0.21 5.10 2.06 -68.86 -0.14 4.95 16 13 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 14 C -0.14 -3.04 8.76 37.16 0.33 -2.71 16 15 C -0.50 -13.28 7.88 -34.44 -0.27 -13.55 16 16 H 0.06 1.69 6.41 -52.49 -0.34 1.35 16 17 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 18 N -0.89 -24.50 11.32 55.43 0.63 -23.87 16 19 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.11 1.51 6.74 -51.92 -0.35 1.16 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.21 2.32 8.06 -52.48 -0.42 1.89 16 31 H 0.09 1.57 4.81 -51.93 -0.25 1.32 16 32 H 0.06 1.11 8.12 -51.93 -0.42 0.69 16 33 H 0.05 0.99 6.73 -51.93 -0.35 0.64 16 34 H 0.08 1.66 6.10 -51.93 -0.32 1.35 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.09 2.22 6.07 -51.93 -0.32 1.91 16 37 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.01 0.14 6.20 -51.93 -0.32 -0.18 16 39 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 314.26 15.07 4.74 4.74 Total: -1.00 -29.03 314.26 -8.14 -37.17 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -6.02 Total: 0.50 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -1.43 Total: -1.52 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: -0.40 Total: -56.68 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.03 -8.14 -37.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088593111.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.133 kcal (2) G-P(sol) polarization free energy of solvation -29.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds