Wall clock time and date at job start Sun Mar 29 2020 22:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46896 * 109.46977 * 2 1 4 4 C 1.46901 * 111.00614 * 298.11927 * 3 2 1 5 5 C 1.50707 * 109.46862 * 292.92316 * 4 3 2 6 6 H 1.08002 * 119.99765 * 354.95811 * 5 4 3 7 7 C 1.37869 * 119.99663 * 174.95419 * 5 4 3 8 8 N 1.31510 * 120.00551 * 0.02562 * 7 5 4 9 9 Si 1.86810 * 119.99831 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46708 * 60.00137 * 9 7 5 11 11 H 1.48492 * 109.47219 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47148 * 300.00690 * 9 7 5 13 13 C 1.46901 * 111.00038 * 62.07498 * 3 2 1 14 14 C 1.50699 * 109.47099 * 66.04098 * 13 3 2 15 15 N 1.34483 * 126.16881 * 270.00128 * 14 13 3 16 16 C 1.30246 * 108.70226 * 180.02562 * 15 14 13 17 17 O 1.33968 * 108.76398 * 359.73401 * 16 15 14 18 18 C 1.34337 * 126.16578 * 90.00427 * 14 13 3 19 19 C 1.50695 * 126.44013 * 359.97438 * 18 14 13 20 20 C 1.53006 * 109.46971 * 120.00329 * 19 18 14 21 21 C 1.52996 * 109.47506 * 240.00146 * 19 18 14 22 22 H 1.08999 * 109.47512 * 179.64999 * 1 2 3 23 23 H 1.08998 * 109.47073 * 299.64762 * 1 2 3 24 24 H 1.09001 * 109.47277 * 59.64692 * 1 2 3 25 25 H 1.08999 * 109.46654 * 239.99974 * 2 1 3 26 26 H 1.08992 * 109.47001 * 120.00271 * 2 1 3 27 27 H 1.09003 * 109.46707 * 52.91530 * 4 3 2 28 28 H 1.08994 * 109.47589 * 172.92001 * 4 3 2 29 29 H 0.97001 * 120.00118 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.46965 * 306.04669 * 13 3 2 31 31 H 1.09001 * 109.47504 * 186.04244 * 13 3 2 32 32 H 1.08002 * 125.61821 * 180.02562 * 16 15 14 33 33 H 1.09001 * 109.47747 * 0.02562 * 19 18 14 34 34 H 1.08994 * 109.47211 * 180.02562 * 20 19 18 35 35 H 1.09001 * 109.46615 * 59.99638 * 20 19 18 36 36 H 1.09003 * 109.46794 * 300.00183 * 20 19 18 37 37 H 1.09000 * 109.47410 * 180.02562 * 21 19 18 38 38 H 1.09001 * 109.47247 * 300.00438 * 21 19 18 39 39 H 1.08997 * 109.47007 * 60.00257 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5858 2.0969 -1.2095 5 6 2.2653 1.4996 -2.4149 6 1 3.0114 0.7292 -2.2876 7 6 1.9344 1.9368 -3.6798 8 7 1.0262 2.8753 -3.8347 9 14 2.7772 1.1970 -5.1739 10 1 2.5130 -0.2637 -5.2185 11 1 2.2483 1.8341 -6.4066 12 1 4.2405 1.4328 -5.0841 13 6 1.5896 2.0954 1.2117 14 6 2.2533 1.4804 2.4168 15 7 1.7699 0.4685 3.1592 16 6 2.6168 0.2096 4.1143 17 8 3.6603 1.0422 4.0024 18 6 3.4345 1.8441 2.9433 19 6 4.3396 2.9389 2.4401 20 6 4.5320 3.9866 3.5385 21 6 5.6968 2.3440 2.0595 22 1 -0.3634 -1.0276 -0.0063 23 1 -0.3633 0.5083 0.8931 24 1 -0.3634 0.5193 -0.8868 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 0.5052 2.0034 -1.3181 28 1 1.8529 3.1503 -1.1266 29 1 0.7937 3.1831 -4.7247 30 1 0.5072 2.0173 1.3138 31 1 1.8728 3.1453 1.1373 32 1 2.4995 -0.5540 4.8690 33 1 3.8902 3.4086 1.5652 34 1 5.1863 4.7787 3.1745 35 1 4.9812 3.5171 4.4137 36 1 3.5650 4.4104 3.8096 37 1 6.3517 3.1359 1.6960 38 1 6.1461 1.8746 2.9347 39 1 5.5598 1.5976 1.2771 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092799113.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:31 Heat of formation + Delta-G solvation = -6.032730 kcal Electronic energy + Delta-G solvation = -19287.727209 eV Core-core repulsion = 16424.018212 eV Total energy + Delta-G solvation = -2863.708997 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.24301 -39.04214 -36.57703 -35.71325 -34.61114 -31.65874 -30.72764 -28.81895 -28.03739 -26.43662 -25.01878 -24.24908 -22.65226 -21.40685 -20.58374 -18.38868 -17.85086 -17.57531 -16.89545 -16.58666 -16.16978 -15.88411 -15.55241 -15.05887 -14.71099 -14.35953 -14.02220 -13.88763 -13.32533 -13.13883 -13.04263 -12.90921 -12.81628 -12.54928 -12.51611 -12.47298 -12.15754 -11.99217 -11.91866 -11.82853 -11.51869 -11.36504 -11.23771 -10.57349 -9.58356 -8.94633 -8.16750 -6.25837 0.62164 1.41789 1.44246 1.52086 1.75422 1.92374 2.42517 3.15770 3.27934 3.55829 3.74462 3.84578 4.02739 4.18880 4.28601 4.39946 4.42125 4.50847 4.63423 4.69770 4.78285 4.82566 4.91718 4.94793 4.97254 5.03699 5.04496 5.19526 5.22909 5.34559 5.35949 5.38795 5.44508 5.52663 5.69428 6.08578 6.34430 6.62682 6.86558 6.89917 7.43091 8.93511 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.023575 B = 0.006168 C = 0.005444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.390616 B = 4538.467156 C = 5142.127001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.072 3.928 3 N -0.532 5.532 4 C 0.205 3.795 5 C -0.518 4.518 6 H 0.057 0.943 7 C 0.006 3.994 8 N -0.933 5.933 9 Si 0.963 3.037 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.268 1.268 13 C 0.133 3.867 14 C -0.021 4.021 15 N -0.512 5.512 16 C 0.172 3.828 17 O -0.206 6.206 18 C -0.019 4.019 19 C -0.012 4.012 20 C -0.139 4.139 21 C -0.138 4.138 22 H 0.066 0.934 23 H 0.052 0.948 24 H 0.036 0.964 25 H 0.056 0.944 26 H 0.066 0.934 27 H -0.019 1.019 28 H 0.004 0.996 29 H 0.264 0.736 30 H 0.036 0.964 31 H 0.081 0.919 32 H 0.294 0.706 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.350 -2.026 16.203 17.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.057 4.057 3 N -0.256 5.256 4 C 0.079 3.921 5 C -0.556 4.556 6 H 0.076 0.924 7 C -0.192 4.192 8 N -0.573 5.573 9 Si 0.788 3.212 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.193 1.193 13 C 0.005 3.995 14 C -0.139 4.139 15 N -0.241 5.241 16 C -0.054 4.054 17 O -0.093 6.093 18 C -0.073 4.073 19 C -0.030 4.030 20 C -0.196 4.196 21 C -0.196 4.196 22 H 0.085 0.915 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.075 0.925 26 H 0.084 0.916 27 H -0.002 1.002 28 H 0.022 0.978 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.309 0.691 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.244 -2.242 15.989 17.311 hybrid contribution -0.441 0.018 -0.936 1.035 sum 5.803 -2.224 15.053 16.285 Atomic orbital electron populations 1.22163 0.98372 1.01874 1.00484 1.21809 0.92972 0.90339 1.00531 1.62284 1.59374 1.02562 1.01367 1.19438 0.93172 0.92686 0.86771 1.21355 1.21880 1.21239 0.91149 0.92447 1.25806 0.95849 0.95572 1.02005 1.70065 1.33254 1.30379 1.23637 0.85531 0.78962 0.78617 0.78085 1.19605 1.20820 1.19343 1.20235 0.96421 0.96741 0.86115 1.21219 0.95514 0.97714 0.99488 1.70285 1.31975 1.15273 1.06557 1.28972 0.80733 0.96026 0.99718 1.84389 1.43689 1.39044 1.42140 1.23346 0.97596 0.97239 0.89147 1.19830 0.93998 0.90398 0.98810 1.21828 1.02441 0.97869 0.97480 1.21764 0.94909 1.01462 1.01433 0.91463 0.92881 0.94500 0.92534 0.91571 1.00162 0.97785 0.92752 0.94575 0.90026 0.69118 0.89069 0.89875 0.91713 0.92678 0.90027 0.91695 0.93977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.80 9.26 71.98 0.67 -6.14 16 2 C 0.07 3.04 5.71 86.31 0.49 3.54 16 3 N -0.53 -23.89 4.68 -905.37 -4.24 -28.13 16 4 C 0.21 10.95 4.53 85.56 0.39 11.33 16 5 C -0.52 -29.50 8.40 25.60 0.21 -29.29 16 6 H 0.06 3.25 7.38 -2.91 -0.02 3.23 16 7 C 0.01 0.33 5.46 84.65 0.46 0.79 16 8 N -0.93 -56.04 13.29 21.44 0.28 -55.76 16 9 Si 0.96 44.58 29.54 68.60 2.03 46.60 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 13 C 0.13 5.19 4.94 85.56 0.42 5.61 16 14 C -0.02 -0.72 5.71 41.26 0.24 -0.48 16 15 N -0.51 -16.14 10.53 -304.07 -3.20 -19.34 16 16 C 0.17 3.92 13.23 130.48 1.73 5.64 16 17 O -0.21 -5.29 10.78 -3.73 -0.04 -5.33 16 18 C -0.02 -0.57 5.89 24.79 0.15 -0.42 16 19 C -0.01 -0.30 3.27 -11.54 -0.04 -0.34 16 20 C -0.14 -2.72 9.18 71.98 0.66 -2.06 16 21 C -0.14 -3.30 9.18 71.98 0.66 -2.64 16 22 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 23 H 0.05 2.05 6.34 -2.39 -0.02 2.03 16 24 H 0.04 1.67 6.28 -2.39 -0.01 1.65 16 25 H 0.06 2.59 6.99 -2.39 -0.02 2.57 16 26 H 0.07 2.66 6.63 -2.39 -0.02 2.64 16 27 H -0.02 -1.11 6.01 -2.39 -0.01 -1.13 16 28 H 0.00 0.23 7.91 -2.39 -0.02 0.21 16 29 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 30 H 0.04 1.46 6.07 -2.39 -0.01 1.45 16 31 H 0.08 3.07 6.93 -2.39 -0.02 3.05 16 32 H 0.29 3.00 8.06 -2.91 -0.02 2.97 16 33 H 0.09 2.68 6.82 -2.39 -0.02 2.66 16 34 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -67.56 315.60 1.89 -65.67 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 1.03 Total: 10.75 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 6.04 Total: -14.45 kcal Atomic # 7 Polarization: -96.07 SS G_CDS: -7.16 Total: -103.23 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -0.04 Total: -5.33 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -67.56 1.89 -65.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092799113.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.633 kcal (2) G-P(sol) polarization free energy of solvation -67.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds