Wall clock time and date at job start Sun Mar 29 2020 23:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00606 * 2 1 4 4 C 1.52994 * 109.47640 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.47188 * 66.94445 * 4 3 2 6 6 C 1.46893 * 111.00133 * 53.76328 * 5 4 3 7 7 C 1.50708 * 109.46670 * 66.04877 * 6 5 4 8 8 H 1.07990 * 120.00334 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99856 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99790 * 359.97438 * 9 7 6 11 11 Si 1.86790 * 119.99984 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47305 * 0.02562 * 11 9 7 13 13 H 1.48495 * 109.47230 * 120.00010 * 11 9 7 14 14 H 1.48504 * 109.47435 * 240.00161 * 11 9 7 15 15 C 1.46908 * 110.99815 * 289.81281 * 5 4 3 16 16 C 1.50693 * 109.46823 * 298.53226 * 15 5 4 17 17 C 1.34847 * 125.89190 * 95.67482 * 16 15 5 18 18 C 1.40895 * 107.42044 * 179.97438 * 17 16 15 19 19 C 1.34852 * 107.41655 * 359.97438 * 18 17 16 20 20 N 1.36341 * 125.89080 * 275.35327 * 16 15 5 21 21 C 1.46501 * 125.63592 * 0.02562 * 20 16 15 22 22 H 1.09001 * 109.47099 * 60.00206 * 1 2 3 23 23 H 1.08994 * 109.47463 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.47300 * 300.00403 * 1 2 3 25 25 H 1.08996 * 109.46970 * 59.99278 * 3 2 1 26 26 H 1.09006 * 109.46521 * 300.00127 * 3 2 1 27 27 H 1.09005 * 109.46961 * 306.94833 * 4 3 2 28 28 H 1.08995 * 109.47316 * 186.94913 * 4 3 2 29 29 H 1.08996 * 109.47819 * 186.04370 * 6 5 4 30 30 H 1.08995 * 109.47441 * 306.05138 * 6 5 4 31 31 H 0.97003 * 119.99628 * 180.02562 * 10 9 7 32 32 H 1.08997 * 109.46914 * 58.53569 * 15 5 4 33 33 H 1.09005 * 109.46664 * 178.53021 * 15 5 4 34 34 H 1.08003 * 126.29047 * 359.96479 * 17 16 15 35 35 H 1.07997 * 126.29623 * 180.02562 * 18 17 16 36 36 H 1.07992 * 125.89114 * 179.97438 * 19 18 17 37 37 H 1.08993 * 109.47630 * 89.99670 * 21 20 16 38 38 H 1.09003 * 109.46625 * 209.99681 * 21 20 16 39 39 H 1.08995 * 109.47030 * 329.98948 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9813 0.6049 -1.2735 6 6 3.4515 1.3665 -2.4123 7 6 4.0540 2.7480 -2.4166 8 1 4.7594 3.0318 -1.6498 9 6 3.7036 3.6498 -3.3990 10 7 2.8441 3.3043 -4.3325 11 14 4.4497 5.3622 -3.4038 12 1 5.3816 5.4995 -2.2558 13 1 5.1927 5.5749 -4.6719 14 1 3.3686 6.3737 -3.2880 15 6 3.6055 -0.8121 -1.3673 16 6 4.2746 -1.5837 -0.2592 17 6 3.7238 -1.8951 0.9316 18 6 4.6854 -2.6179 1.6650 19 6 5.7871 -2.7211 0.8942 20 7 5.5391 -2.0924 -0.2900 21 6 6.4775 -1.9796 -1.4094 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.6886 1.8463 0.8899 26 1 1.6886 1.8463 -0.8900 27 1 3.8485 0.5402 0.8222 28 1 3.9782 2.1728 0.1250 29 1 3.7066 0.8562 -3.3410 30 1 2.3677 1.4431 -2.3256 31 1 2.5979 3.9387 -5.0238 32 1 2.5236 -0.9079 -1.2750 33 1 3.9245 -1.2096 -2.3309 34 1 2.7284 -1.6377 1.2624 35 1 4.5626 -3.0169 2.6611 36 1 6.7061 -3.2186 1.1667 37 1 7.0730 -1.0740 -1.2945 38 1 7.1359 -2.8483 -1.4204 39 1 5.9219 -1.9329 -2.3459 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093100244.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:08 Heat of formation + Delta-G solvation = 18.253939 kcal Electronic energy + Delta-G solvation = -19522.539685 eV Core-core repulsion = 16659.883836 eV Total energy + Delta-G solvation = -2862.655848 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.74238 -38.08046 -35.74151 -32.60528 -32.36260 -30.08170 -28.69031 -26.50972 -25.95512 -25.91336 -23.64547 -22.93215 -20.09721 -19.74404 -18.49037 -16.51705 -16.10762 -15.96776 -15.92587 -15.05839 -14.65719 -14.38444 -13.95596 -13.66681 -13.21543 -12.92161 -12.63113 -12.12927 -11.97198 -11.85034 -11.57973 -11.50959 -11.36459 -11.25968 -11.15493 -10.84649 -10.63834 -10.54893 -10.25742 -9.83929 -9.23494 -8.94617 -8.44181 -8.08913 -7.53452 -7.03637 -6.04485 -4.05707 2.74389 3.28456 3.36500 3.41060 3.46132 3.53139 4.28930 4.41892 5.13798 5.21615 5.31585 5.37745 5.52173 5.58100 5.63530 5.67341 5.81295 5.88442 5.93328 5.94603 6.03385 6.10797 6.14667 6.30201 6.46039 6.63946 6.78869 6.82322 6.92608 7.29299 7.41347 7.56679 7.65381 7.78883 7.81117 7.88463 8.10789 8.26979 8.57337 9.03323 9.58851 11.05907 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.020895 B = 0.006974 C = 0.005773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.742225 B = 4014.176607 C = 4848.885232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.380 6.380 3 C 0.020 3.980 4 C 0.068 3.932 5 N -0.528 5.528 6 C 0.188 3.812 7 C -0.504 4.504 8 H 0.062 0.938 9 C 0.055 3.945 10 N -0.898 5.898 11 Si 0.895 3.105 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.285 1.285 15 C 0.107 3.893 16 C 0.051 3.949 17 C -0.197 4.197 18 C -0.208 4.208 19 C -0.033 4.033 20 N -0.442 5.442 21 C 0.079 3.921 22 H 0.038 0.962 23 H 0.077 0.923 24 H 0.033 0.967 25 H 0.036 0.964 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.026 0.974 30 H 0.001 0.999 31 H 0.260 0.740 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.136 0.864 35 H 0.125 0.875 36 H 0.151 0.849 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.945 -9.404 8.111 12.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.299 6.299 3 C -0.058 4.058 4 C -0.060 4.060 5 N -0.252 5.252 6 C 0.063 3.937 7 C -0.543 4.543 8 H 0.081 0.919 9 C -0.146 4.146 10 N -0.538 5.538 11 Si 0.723 3.277 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.212 1.212 15 C -0.021 4.021 16 C -0.062 4.062 17 C -0.222 4.222 18 C -0.233 4.233 19 C -0.163 4.163 20 N -0.117 5.117 21 C -0.063 4.063 22 H 0.056 0.944 23 H 0.096 0.904 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.105 0.895 29 H 0.044 0.956 30 H 0.019 0.981 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.154 0.846 35 H 0.143 0.857 36 H 0.169 0.831 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.746 -9.436 7.610 12.248 hybrid contribution -0.684 1.228 -0.094 1.409 sum 1.061 -8.209 7.516 11.180 Atomic orbital electron populations 1.22665 0.82879 1.01743 0.99551 1.87951 1.18340 1.28627 1.94987 1.23499 0.97121 0.84442 1.00710 1.22146 0.89583 1.00917 0.93397 1.62317 1.59408 1.00106 1.03364 1.19807 0.93801 0.92706 0.87394 1.21209 1.25138 0.96594 1.11363 0.91939 1.24976 0.95310 0.98750 0.95542 1.69972 1.33551 1.35487 1.14819 0.86493 0.79018 0.84259 0.77969 1.19693 1.21069 1.21160 1.20828 0.98847 0.88946 0.93462 1.20449 0.84867 1.02194 0.98644 1.20743 1.00616 1.06354 0.94465 1.20784 0.94752 1.07581 1.00193 1.21597 1.00778 1.06615 0.87326 1.43919 1.12153 1.42512 1.13142 1.21895 0.92941 1.02416 0.89071 0.94367 0.90431 0.94862 0.94531 0.91058 0.91068 0.89514 0.95599 0.98105 0.93037 0.90203 0.92191 0.84647 0.85667 0.83123 0.90769 0.91023 0.89946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.52 16 2 O -0.38 -6.63 6.24 -35.23 -0.22 -6.85 16 3 C 0.02 0.37 5.69 37.15 0.21 0.58 16 4 C 0.07 1.36 5.46 -3.82 -0.02 1.34 16 5 N -0.53 -11.38 4.73 -237.52 -1.12 -12.50 16 6 C 0.19 4.75 4.36 -4.98 -0.02 4.73 16 7 C -0.50 -13.76 8.60 -34.43 -0.30 -14.06 16 8 H 0.06 1.71 7.10 -52.49 -0.37 1.33 16 9 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 10 N -0.90 -26.16 13.29 55.43 0.74 -25.42 16 11 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 15 C 0.11 2.07 4.72 -4.97 -0.02 2.05 16 16 C 0.05 0.91 5.48 -81.79 -0.45 0.46 16 17 C -0.20 -3.40 9.21 -39.78 -0.37 -3.77 16 18 C -0.21 -3.22 10.86 -39.78 -0.43 -3.65 16 19 C -0.03 -0.49 11.44 -16.74 -0.19 -0.68 16 20 N -0.44 -7.07 3.15 -119.91 -0.38 -7.44 16 21 C 0.08 1.04 10.92 59.85 0.65 1.70 16 22 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.07 1.54 5.80 -51.93 -0.30 1.24 16 27 H 0.07 1.38 5.85 -51.93 -0.30 1.08 16 28 H 0.09 1.81 7.05 -51.93 -0.37 1.44 16 29 H 0.03 0.71 7.99 -51.93 -0.42 0.29 16 30 H 0.00 0.04 5.71 -51.93 -0.30 -0.26 16 31 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 32 H 0.08 1.59 5.22 -51.93 -0.27 1.32 16 33 H 0.06 1.15 7.11 -51.93 -0.37 0.78 16 34 H 0.14 2.34 6.95 -52.48 -0.36 1.97 16 35 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 36 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 1.12 7.13 -51.93 -0.37 0.75 16 LS Contribution 310.64 15.07 4.68 4.68 Total: -1.00 -30.03 310.64 -7.19 -37.22 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -5.95 Total: 2.37 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 0.08 Total: -8.35 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: -0.76 Total: -45.37 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.22 Total: -6.85 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.03 -7.19 -37.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100244.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.471 kcal (2) G-P(sol) polarization free energy of solvation -30.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds