Wall clock time and date at job start Sun Mar 29 2020 23:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 111.75952 * 2 1 4 4 C 1.56945 * 112.02632 * 126.66221 * 2 1 3 5 5 H 1.09005 * 116.22684 * 297.12413 * 4 2 1 6 6 C 1.55920 * 101.41242 * 170.50226 * 4 2 1 7 7 C 1.54587 * 104.64449 * 325.98077 * 6 4 2 8 8 C 1.56952 * 112.02719 * 233.33664 * 2 1 3 9 9 C 1.53002 * 116.86433 * 63.26130 * 8 2 1 10 10 C 1.55919 * 100.65136 * 296.82708 * 8 2 1 11 11 H 1.09001 * 110.50237 * 207.38044 * 10 8 2 12 12 O 1.42898 * 110.40381 * 85.01172 * 10 8 2 13 13 C 1.42906 * 113.99824 * 153.32624 * 12 10 8 14 14 C 1.53006 * 109.46752 * 180.02562 * 13 12 10 15 15 C 1.50699 * 109.46866 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99963 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00270 * 179.97438 * 15 14 13 18 18 N 1.31522 * 119.99835 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00496 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47183 * 60.00274 * 19 17 15 21 21 H 1.48496 * 109.47425 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47216 * 300.00267 * 19 17 15 23 23 C 1.54581 * 104.64363 * 326.22161 * 10 8 2 24 24 H 1.08998 * 109.47586 * 294.79100 * 1 2 3 25 25 H 1.09007 * 109.47220 * 54.79181 * 1 2 3 26 26 H 1.09007 * 109.47211 * 174.78844 * 1 2 3 27 27 H 1.09006 * 109.46648 * 185.20426 * 3 2 1 28 28 H 1.09000 * 109.47272 * 305.20902 * 3 2 1 29 29 H 1.08996 * 109.47029 * 65.21182 * 3 2 1 30 30 H 1.09003 * 110.40449 * 84.77529 * 6 4 2 31 31 H 1.09000 * 110.40973 * 207.07387 * 6 4 2 32 32 H 1.09004 * 110.39932 * 118.78952 * 7 6 4 33 33 H 1.08998 * 110.40088 * 241.08889 * 7 6 4 34 34 H 1.09000 * 109.47324 * 300.51879 * 9 8 2 35 35 H 1.08995 * 109.47154 * 60.52340 * 9 8 2 36 36 H 1.09007 * 109.46569 * 180.52037 * 9 8 2 37 37 H 1.08993 * 109.47732 * 60.00254 * 13 12 10 38 38 H 1.09000 * 109.47141 * 299.99893 * 13 12 10 39 39 H 1.09000 * 109.47050 * 299.99753 * 14 13 12 40 40 H 1.09001 * 109.46801 * 59.99865 * 14 13 12 41 41 H 0.96992 * 120.00038 * 180.02562 * 18 17 15 42 42 H 1.09003 * 110.40748 * 118.79475 * 23 10 8 43 43 H 1.08999 * 110.40539 * 241.09112 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0972 1.4210 0.0000 4 6 2.1186 -0.8687 1.1671 5 1 1.8860 -0.5371 2.1791 6 6 3.6317 -0.9042 0.7924 7 6 3.6515 -0.9118 -0.7533 8 6 2.1186 -0.8688 -1.1671 9 6 1.8087 -0.4112 -2.5938 10 6 1.5857 -2.2800 -0.7730 11 1 2.2478 -3.0580 -1.1529 12 8 0.2597 -2.4688 -1.2711 13 6 -0.0842 -3.8360 -1.5047 14 6 -1.5174 -3.9180 -2.0342 15 6 -1.8799 -5.3598 -2.2812 16 1 -1.1600 -6.1395 -2.0810 17 6 -3.1306 -5.6834 -2.7627 18 7 -4.0072 -4.7338 -3.0070 19 14 -3.5798 -7.4704 -3.0695 20 1 -3.4766 -8.2320 -1.7988 21 1 -4.9708 -7.5501 -3.5833 22 1 -2.6488 -8.0499 -4.0709 23 6 1.5856 -2.2800 0.7729 24 1 -0.3634 0.4309 0.9329 25 1 -0.3634 0.5925 -0.8397 26 1 -0.3634 -1.0235 -0.0934 27 1 3.1825 1.3790 -0.0932 28 1 1.6816 1.9781 -0.8396 29 1 1.8317 1.9181 0.9329 30 1 4.1388 -0.0183 1.1747 31 1 4.0993 -1.8074 1.1845 32 1 4.1683 -0.0294 -1.1310 33 1 4.1302 -1.8187 -1.1227 34 1 0.7292 -0.3962 -2.7442 35 1 2.2112 0.5896 -2.7499 36 1 2.2649 -1.1012 -3.3038 37 1 -0.0088 -4.3943 -0.5717 38 1 0.5990 -4.2622 -2.2394 39 1 -2.2010 -3.4918 -1.2999 40 1 -1.5924 -3.3598 -2.9674 41 1 -4.8872 -4.9615 -3.3454 42 1 0.5742 -2.4241 1.1529 43 1 2.2478 -3.0580 1.1529 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123894843.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:57:57 Heat of formation + Delta-G solvation = -64.897112 kcal Electronic energy + Delta-G solvation = -19911.888905 eV Core-core repulsion = 17149.167700 eV Total energy + Delta-G solvation = -2762.721205 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.183 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.92127 -36.64753 -33.17238 -31.94058 -31.26151 -30.56509 -29.11987 -26.34418 -25.72481 -24.49632 -23.31579 -21.71578 -20.78954 -18.88946 -17.64473 -16.60216 -15.83834 -15.33641 -15.16896 -14.48075 -14.32493 -14.17854 -13.57368 -13.00651 -12.62472 -12.39584 -12.25073 -12.21855 -12.12896 -11.97861 -11.74050 -11.48517 -11.14935 -11.04241 -10.95186 -10.83336 -10.79765 -10.50477 -10.26736 -10.17561 -10.02762 -9.96370 -9.47403 -9.36594 -9.15932 -8.71847 -8.32568 -6.01161 -4.04560 3.33032 3.37307 3.39455 4.18883 4.44887 4.47434 4.51752 4.78924 5.15035 5.19692 5.22628 5.33355 5.34797 5.42786 5.46445 5.51668 5.61129 5.77265 5.78771 5.83568 5.92641 5.98682 6.01507 6.05552 6.09821 6.15545 6.19230 6.27303 6.28139 6.38163 6.39693 6.43712 6.48903 6.54812 6.70757 6.90632 7.04880 7.60400 7.82927 7.88629 8.18851 8.39898 9.01978 9.58990 11.10386 Molecular weight = 252.18amu Principal moments of inertia in cm(-1) A = 0.038510 B = 0.004718 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.916698 B = 5933.653974 C = 6079.046954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.058 4.058 3 C -0.135 4.135 4 C -0.093 4.093 5 H 0.092 0.908 6 C -0.120 4.120 7 C -0.117 4.117 8 C -0.058 4.058 9 C -0.115 4.115 10 C 0.091 3.909 11 H 0.054 0.946 12 O -0.372 6.372 13 C 0.066 3.934 14 C 0.028 3.972 15 C -0.524 4.524 16 H 0.054 0.946 17 C 0.060 3.940 18 N -0.891 5.891 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 C -0.143 4.143 24 H 0.042 0.958 25 H 0.050 0.950 26 H 0.093 0.907 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.031 0.969 38 H 0.032 0.968 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.262 0.738 42 H 0.076 0.924 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.632 10.215 6.569 19.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.058 4.058 3 C -0.192 4.192 4 C -0.111 4.111 5 H 0.110 0.890 6 C -0.157 4.157 7 C -0.155 4.155 8 C -0.058 4.058 9 C -0.173 4.173 10 C 0.032 3.968 11 H 0.072 0.928 12 O -0.292 6.292 13 C -0.009 4.009 14 C -0.010 4.010 15 C -0.562 4.562 16 H 0.073 0.927 17 C -0.142 4.142 18 N -0.530 5.530 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.181 4.181 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.112 0.888 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 14.324 10.376 6.461 18.830 hybrid contribution -0.075 -1.325 -0.062 1.329 sum 14.249 9.051 6.399 18.052 Atomic orbital electron populations 1.21899 0.93278 1.04959 1.00162 1.22440 0.95747 0.93579 0.94071 1.21723 1.00622 0.95685 1.01194 1.23517 0.94457 0.95419 0.97736 0.88957 1.22597 0.96333 1.01064 0.95723 1.23099 0.95652 1.01285 0.95425 1.23446 0.93459 0.94059 0.94803 1.21194 1.02915 0.99735 0.93409 1.23107 0.85511 0.95772 0.92368 0.92807 1.87964 1.28669 1.27662 1.84890 1.22888 0.99830 0.80578 0.97620 1.19037 0.88206 0.96897 0.96816 1.21034 0.98856 0.92125 1.44206 0.92736 1.24980 0.96376 0.97397 0.95450 1.69971 1.06079 1.32103 1.44855 0.86613 0.77478 0.85030 0.78607 1.20206 1.21187 1.20206 1.23232 1.01853 0.96290 0.96731 0.93903 0.93087 0.88833 0.92556 0.92807 0.93104 0.92093 0.92053 0.91689 0.91963 0.90961 0.93056 0.92779 0.95019 0.95009 0.95880 0.95856 0.92840 0.90553 0.92096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.23 37.16 0.31 -1.83 16 2 C -0.06 -0.74 0.80 -150.23 -0.12 -0.86 16 3 C -0.14 -1.45 8.45 37.16 0.31 -1.13 16 4 C -0.09 -1.10 4.45 -85.36 -0.38 -1.48 16 5 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 6 C -0.12 -1.24 5.55 -24.34 -0.14 -1.38 16 7 C -0.12 -1.30 5.38 -22.66 -0.12 -1.42 16 8 C -0.06 -0.77 0.85 -147.57 -0.13 -0.89 16 9 C -0.12 -1.56 9.10 37.16 0.34 -1.22 16 10 C 0.09 1.42 2.39 -24.34 -0.06 1.36 16 11 H 0.05 0.84 7.57 -51.93 -0.39 0.45 16 12 O -0.37 -7.26 6.85 -35.23 -0.24 -7.50 16 13 C 0.07 1.46 5.74 37.16 0.21 1.67 16 14 C 0.03 0.74 5.34 -27.88 -0.15 0.59 16 15 C -0.52 -15.03 9.11 -34.44 -0.31 -15.35 16 16 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 19 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 23 C -0.14 -2.00 5.41 -24.34 -0.13 -2.14 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.09 1.63 4.21 -51.93 -0.22 1.41 16 27 H 0.06 0.55 5.49 -51.93 -0.29 0.27 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.56 7.57 -51.93 -0.39 0.17 16 31 H 0.06 0.61 7.83 -51.93 -0.41 0.21 16 32 H 0.06 0.65 7.32 -51.93 -0.38 0.27 16 33 H 0.06 0.68 7.87 -51.93 -0.41 0.28 16 34 H 0.07 1.12 7.79 -51.93 -0.40 0.72 16 35 H 0.05 0.59 8.08 -51.93 -0.42 0.17 16 36 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.03 0.68 8.10 -51.93 -0.42 0.26 16 39 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.08 1.19 7.38 -51.93 -0.38 0.80 16 43 H 0.06 0.79 7.82 -51.93 -0.41 0.38 16 LS Contribution 323.61 15.07 4.88 4.88 Total: -1.00 -29.56 323.61 -7.98 -37.54 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -7.87 Total: -2.85 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: -0.46 Total: -22.44 kcal Atomic # 7 Polarization: -27.06 SS G_CDS: 0.74 Total: -26.32 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: -0.24 Total: -7.50 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.56 -7.98 -37.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123894843.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.361 kcal (2) G-P(sol) polarization free energy of solvation -29.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds