Wall clock time and date at job start Sun Mar 29 2020 23:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 111.75952 * 2 1 4 4 C 1.56945 * 112.02632 * 126.66221 * 2 1 3 5 5 H 1.09005 * 116.22684 * 297.12413 * 4 2 1 6 6 C 1.55920 * 101.41242 * 170.50226 * 4 2 1 7 7 C 1.54587 * 104.64449 * 325.98077 * 6 4 2 8 8 C 1.56952 * 112.02719 * 233.33664 * 2 1 3 9 9 C 1.53002 * 116.86433 * 63.26130 * 8 2 1 10 10 C 1.55919 * 100.65136 * 296.82708 * 8 2 1 11 11 H 1.09001 * 110.50237 * 207.38044 * 10 8 2 12 12 O 1.42898 * 110.40381 * 85.01172 * 10 8 2 13 13 C 1.42906 * 113.99824 * 153.32624 * 12 10 8 14 14 C 1.53006 * 109.46752 * 180.02562 * 13 12 10 15 15 C 1.50699 * 109.46866 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99963 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00270 * 179.97438 * 15 14 13 18 18 N 1.31522 * 119.99835 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00496 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47183 * 60.00274 * 19 17 15 21 21 H 1.48496 * 109.47425 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47216 * 300.00267 * 19 17 15 23 23 C 1.54581 * 104.64363 * 326.22161 * 10 8 2 24 24 H 1.08998 * 109.47586 * 294.79100 * 1 2 3 25 25 H 1.09007 * 109.47220 * 54.79181 * 1 2 3 26 26 H 1.09007 * 109.47211 * 174.78844 * 1 2 3 27 27 H 1.09006 * 109.46648 * 185.20426 * 3 2 1 28 28 H 1.09000 * 109.47272 * 305.20902 * 3 2 1 29 29 H 1.08996 * 109.47029 * 65.21182 * 3 2 1 30 30 H 1.09003 * 110.40449 * 84.77529 * 6 4 2 31 31 H 1.09000 * 110.40973 * 207.07387 * 6 4 2 32 32 H 1.09004 * 110.39932 * 118.78952 * 7 6 4 33 33 H 1.08998 * 110.40088 * 241.08889 * 7 6 4 34 34 H 1.09000 * 109.47324 * 300.51879 * 9 8 2 35 35 H 1.08995 * 109.47154 * 60.52340 * 9 8 2 36 36 H 1.09007 * 109.46569 * 180.52037 * 9 8 2 37 37 H 1.08993 * 109.47732 * 60.00254 * 13 12 10 38 38 H 1.09000 * 109.47141 * 299.99893 * 13 12 10 39 39 H 1.09000 * 109.47050 * 299.99753 * 14 13 12 40 40 H 1.09001 * 109.46801 * 59.99865 * 14 13 12 41 41 H 0.96992 * 120.00038 * 180.02562 * 18 17 15 42 42 H 1.09003 * 110.40748 * 118.79475 * 23 10 8 43 43 H 1.08999 * 110.40539 * 241.09112 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0972 1.4210 0.0000 4 6 2.1186 -0.8687 1.1671 5 1 1.8860 -0.5371 2.1791 6 6 3.6317 -0.9042 0.7924 7 6 3.6515 -0.9118 -0.7533 8 6 2.1186 -0.8688 -1.1671 9 6 1.8087 -0.4112 -2.5938 10 6 1.5857 -2.2800 -0.7730 11 1 2.2478 -3.0580 -1.1529 12 8 0.2597 -2.4688 -1.2711 13 6 -0.0842 -3.8360 -1.5047 14 6 -1.5174 -3.9180 -2.0342 15 6 -1.8799 -5.3598 -2.2812 16 1 -1.1600 -6.1395 -2.0810 17 6 -3.1306 -5.6834 -2.7627 18 7 -4.0072 -4.7338 -3.0070 19 14 -3.5798 -7.4704 -3.0695 20 1 -3.4766 -8.2320 -1.7988 21 1 -4.9708 -7.5501 -3.5833 22 1 -2.6488 -8.0499 -4.0709 23 6 1.5856 -2.2800 0.7729 24 1 -0.3634 0.4309 0.9329 25 1 -0.3634 0.5925 -0.8397 26 1 -0.3634 -1.0235 -0.0934 27 1 3.1825 1.3790 -0.0932 28 1 1.6816 1.9781 -0.8396 29 1 1.8317 1.9181 0.9329 30 1 4.1388 -0.0183 1.1747 31 1 4.0993 -1.8074 1.1845 32 1 4.1683 -0.0294 -1.1310 33 1 4.1302 -1.8187 -1.1227 34 1 0.7292 -0.3962 -2.7442 35 1 2.2112 0.5896 -2.7499 36 1 2.2649 -1.1012 -3.3038 37 1 -0.0088 -4.3943 -0.5717 38 1 0.5990 -4.2622 -2.2394 39 1 -2.2010 -3.4918 -1.2999 40 1 -1.5924 -3.3598 -2.9674 41 1 -4.8872 -4.9615 -3.3454 42 1 0.5742 -2.4241 1.1529 43 1 2.2478 -3.0580 1.1529 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123894843.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:57:57 Heat of formation + Delta-G solvation = -80.077201 kcal Electronic energy + Delta-G solvation = -19912.547163 eV Core-core repulsion = 17149.167700 eV Total energy + Delta-G solvation = -2763.379463 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.183 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.98411 -38.19090 -35.32310 -32.93666 -32.41108 -32.16072 -30.61084 -27.37093 -26.96859 -26.38946 -24.35111 -22.98749 -22.62708 -19.89920 -18.90137 -18.45653 -17.40035 -16.66983 -16.52228 -16.17874 -15.76954 -15.29289 -14.74638 -14.43044 -14.17947 -13.97717 -13.50866 -13.36068 -13.24578 -13.16918 -12.95264 -12.83911 -12.78787 -12.58966 -12.46051 -12.13388 -11.96676 -11.83731 -11.72311 -11.55275 -11.41422 -11.23449 -11.06083 -10.89125 -10.62190 -10.52290 -10.17880 -8.24200 -6.37609 1.39273 1.43408 1.51482 2.36930 2.91422 3.09279 3.45744 3.51302 3.63862 4.13111 4.20101 4.22078 4.29385 4.38290 4.41794 4.48925 4.52601 4.54228 4.66546 4.76864 4.78538 4.89193 4.90716 4.94115 4.97720 5.05350 5.08951 5.11963 5.17862 5.20721 5.22435 5.31660 5.39112 5.40682 5.48694 5.56658 5.59019 5.62582 5.73914 5.79004 6.12783 6.57405 6.78272 7.32189 8.88528 Molecular weight = 252.18amu Principal moments of inertia in cm(-1) A = 0.038510 B = 0.004718 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.916698 B = 5933.653974 C = 6079.046954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.059 4.059 3 C -0.130 4.130 4 C -0.087 4.087 5 H 0.106 0.894 6 C -0.113 4.113 7 C -0.111 4.111 8 C -0.063 4.063 9 C -0.114 4.114 10 C 0.078 3.922 11 H 0.053 0.947 12 O -0.386 6.386 13 C 0.086 3.914 14 C 0.034 3.966 15 C -0.548 4.548 16 H 0.064 0.936 17 C 0.002 3.998 18 N -0.932 5.932 19 Si 0.973 3.027 20 H -0.265 1.265 21 H -0.281 1.281 22 H -0.264 1.264 23 C -0.143 4.143 24 H 0.052 0.948 25 H 0.040 0.960 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.040 0.960 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.036 0.964 38 H 0.037 0.963 39 H -0.009 1.009 40 H -0.008 1.008 41 H 0.266 0.734 42 H 0.052 0.948 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.934 10.098 7.423 21.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.059 4.059 3 C -0.187 4.187 4 C -0.105 4.105 5 H 0.124 0.876 6 C -0.150 4.150 7 C -0.148 4.148 8 C -0.063 4.063 9 C -0.171 4.171 10 C 0.020 3.980 11 H 0.071 0.929 12 O -0.306 6.306 13 C 0.009 3.991 14 C -0.003 4.003 15 C -0.586 4.586 16 H 0.083 0.917 17 C -0.196 4.196 18 N -0.571 5.571 19 Si 0.796 3.204 20 H -0.189 1.189 21 H -0.206 1.206 22 H -0.189 1.189 23 C -0.181 4.181 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.010 0.990 40 H 0.010 0.990 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 16.649 10.269 7.325 20.887 hybrid contribution -0.822 -1.221 -0.330 1.508 sum 15.827 9.047 6.995 19.527 Atomic orbital electron populations 1.21839 0.95493 1.02612 1.00221 1.22452 0.94007 0.95211 0.94236 1.21688 1.01492 0.93838 1.01696 1.23554 0.95665 0.93236 0.98029 0.87594 1.22589 0.94907 1.02582 0.94961 1.23097 0.93277 1.02336 0.96101 1.23532 0.95595 0.92437 0.94772 1.21162 1.00946 1.01114 0.93886 1.23488 0.83345 0.97507 0.93641 0.92870 1.87973 1.31427 1.25722 1.85442 1.22415 0.96764 0.82316 0.97562 1.18869 0.90935 0.95981 0.94565 1.21451 0.99607 0.92927 1.44579 0.91742 1.26026 0.96126 1.02734 0.94750 1.70122 1.06609 1.34870 1.45493 0.85388 0.77380 0.78527 0.79066 1.18935 1.20613 1.18921 1.23208 1.00991 0.98571 0.95309 0.92914 0.94105 0.92124 0.90823 0.93092 0.92096 0.89871 0.91280 0.89792 0.91815 0.94045 0.90738 0.92993 0.94539 0.94512 0.99012 0.98981 0.92551 0.92922 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.33 8.23 71.98 0.59 -3.74 16 2 C -0.06 -1.41 0.80 -49.41 -0.04 -1.45 16 3 C -0.13 -2.40 8.45 71.98 0.61 -1.80 16 4 C -0.09 -1.85 4.45 -7.39 -0.03 -1.89 16 5 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 6 C -0.11 -1.91 5.55 32.15 0.18 -1.73 16 7 C -0.11 -2.09 5.38 33.23 0.18 -1.92 16 8 C -0.06 -1.61 0.85 -47.69 -0.04 -1.65 16 9 C -0.11 -3.06 9.10 71.98 0.66 -2.40 16 10 C 0.08 2.43 2.39 32.14 0.08 2.51 16 11 H 0.05 1.65 7.57 -2.39 -0.02 1.63 16 12 O -0.39 -15.79 6.85 -148.98 -1.02 -16.81 16 13 C 0.09 3.90 5.74 71.98 0.41 4.32 16 14 C 0.03 1.92 5.34 29.85 0.16 2.08 16 15 C -0.55 -32.20 9.11 25.60 0.23 -31.96 16 16 H 0.06 3.57 7.74 -2.91 -0.02 3.55 16 17 C 0.00 0.11 5.46 84.65 0.46 0.58 16 18 N -0.93 -58.20 13.29 21.45 0.28 -57.92 16 19 Si 0.97 44.69 29.54 68.60 2.03 46.71 16 20 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 23 C -0.14 -3.91 5.41 32.15 0.17 -3.74 16 24 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 26 H 0.06 2.24 4.21 -2.38 -0.01 2.23 16 27 H 0.07 1.12 5.49 -2.38 -0.01 1.11 16 28 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 1.10 7.57 -2.39 -0.02 1.08 16 31 H 0.07 1.10 7.83 -2.39 -0.02 1.09 16 32 H 0.08 1.31 7.32 -2.39 -0.02 1.29 16 33 H 0.06 1.21 7.87 -2.39 -0.02 1.19 16 34 H 0.04 1.34 7.79 -2.39 -0.02 1.32 16 35 H 0.07 1.61 8.08 -2.39 -0.02 1.59 16 36 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.04 1.62 8.10 -2.39 -0.02 1.60 16 39 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 40 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 41 H 0.27 15.51 8.31 -92.71 -0.77 14.73 16 42 H 0.05 1.68 7.38 -2.39 -0.02 1.66 16 43 H 0.07 1.79 7.82 -2.39 -0.02 1.77 16 Total: -1.00 -65.99 323.61 5.85 -60.13 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 0.95 Total: 10.67 kcal Atomic # 6 Polarization: -46.41 SS G_CDS: 3.62 Total: -42.79 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: 0.28 Total: -57.92 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -1.02 Total: -16.81 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -65.99 5.85 -60.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123894843.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.944 kcal (2) G-P(sol) polarization free energy of solvation -65.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds