Wall clock time and date at job start Sun Mar 29 2020 23:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46860 * 2 1 4 4 C 1.53002 * 109.46884 * 239.99880 * 2 1 3 5 5 C 1.50694 * 109.47120 * 60.00007 * 4 2 1 6 6 H 1.08002 * 120.00364 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00025 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00540 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99875 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47483 * 89.99684 * 9 7 5 11 11 H 1.48509 * 109.47270 * 209.99454 * 9 7 5 12 12 H 1.48498 * 109.47387 * 329.99395 * 9 7 5 13 13 C 1.52995 * 109.46732 * 119.99986 * 2 1 3 14 14 N 1.46899 * 109.47461 * 299.99799 * 13 2 1 15 15 C 1.46899 * 111.00541 * 180.02562 * 14 13 2 16 16 C 1.52996 * 109.47447 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.47202 * 179.97438 * 16 15 14 18 18 N 1.30829 * 125.96102 * 304.97821 * 17 16 15 19 19 C 1.33239 * 109.82920 * 179.97438 * 18 17 16 20 20 N 1.30714 * 108.94945 * 359.97438 * 19 18 17 21 21 N 1.34428 * 125.96139 * 124.94746 * 17 16 15 22 22 H 0.97003 * 126.82574 * 0.02562 * 21 17 16 23 23 H 1.09000 * 109.47303 * 300.00308 * 1 2 3 24 24 H 1.09005 * 109.47341 * 59.99883 * 1 2 3 25 25 H 1.09004 * 109.47295 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46536 * 180.02562 * 3 2 1 27 27 H 1.08995 * 109.46752 * 299.99589 * 3 2 1 28 28 H 1.08996 * 109.47336 * 60.00509 * 3 2 1 29 29 H 1.09002 * 109.46717 * 179.97438 * 4 2 1 30 30 H 1.08995 * 109.47132 * 300.00010 * 4 2 1 31 31 H 0.96997 * 120.01041 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.47279 * 180.02562 * 13 2 1 33 33 H 1.08999 * 109.47882 * 59.99908 * 13 2 1 34 34 H 1.00900 * 110.99930 * 303.95899 * 14 13 2 35 35 H 1.09002 * 109.46877 * 59.99683 * 15 14 13 36 36 H 1.09002 * 109.46874 * 300.00278 * 15 14 13 37 37 H 1.08993 * 109.47163 * 59.99888 * 16 15 14 38 38 H 1.09002 * 109.47221 * 299.99955 * 16 15 14 39 39 H 1.08002 * 125.53210 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8711 -0.4817 -3.7319 8 7 1.4332 0.1385 -4.8058 9 14 2.9450 -2.0005 -3.9033 10 1 2.0864 -3.2113 -3.9492 11 1 3.7373 -1.9078 -5.1559 12 1 3.8651 -2.0899 -2.7411 13 6 2.0399 -0.7212 1.2492 14 7 1.5503 -0.0288 2.4487 15 6 2.0217 -0.6945 3.6704 16 6 1.4921 0.0533 4.8956 17 6 1.9752 -0.6300 6.1488 18 7 1.8049 -1.8917 6.4504 19 6 2.3613 -2.1529 7.6325 20 7 2.8963 -1.0564 8.1014 21 7 2.6568 -0.0498 7.1517 22 1 2.9295 0.8794 7.2081 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1299 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 -0.7209 -1.2495 30 1 1.6766 -1.7489 -1.2492 31 1 1.6674 -0.1929 -5.6868 32 1 3.1300 -0.7209 1.2496 33 1 1.6766 -1.7489 1.2493 34 1 1.8197 0.9436 2.4401 35 1 3.1116 -0.6940 3.6869 36 1 1.6585 -1.7221 3.6873 37 1 0.4023 0.0524 4.8787 38 1 1.8549 1.0811 4.8788 39 1 2.3691 -3.1148 8.1237 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131678945.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:41:17 Heat of formation + Delta-G solvation = 67.057312 kcal Electronic energy + Delta-G solvation = -18153.819441 eV Core-core repulsion = 15325.572617 eV Total energy + Delta-G solvation = -2828.246824 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.40249 -37.93246 -35.41237 -32.95529 -32.66570 -31.88487 -29.25271 -27.55383 -26.38760 -25.28903 -23.17885 -22.92432 -21.72185 -20.79814 -18.29242 -17.81050 -16.80038 -16.22440 -15.43478 -15.31140 -14.73466 -14.52406 -14.11519 -13.79249 -13.37357 -13.00212 -12.68489 -12.49400 -12.37463 -12.08517 -11.76547 -11.41405 -11.06018 -10.93380 -10.84582 -10.53486 -10.50006 -10.37785 -10.33338 -9.86942 -9.79329 -9.68225 -9.29772 -8.90472 -8.49310 -8.25403 -5.99652 -3.95892 1.28144 2.30394 2.64763 3.33102 3.40722 3.43978 3.75770 4.24492 4.44989 4.48876 4.70900 4.93996 5.01707 5.27096 5.33524 5.54371 5.60501 5.75598 5.81153 5.87551 5.94484 6.12775 6.13263 6.23870 6.40112 6.58213 6.67398 6.68844 6.79899 7.05423 7.11171 7.17924 7.25178 7.32800 7.45023 7.56563 7.78177 7.85716 8.59950 9.06172 9.63573 11.13448 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.043908 B = 0.003524 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.550820 B = 7944.167344 C = 8270.918648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.049 4.049 3 C -0.131 4.131 4 C -0.005 4.005 5 C -0.507 4.507 6 H 0.078 0.922 7 C 0.065 3.935 8 N -0.906 5.906 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.267 1.267 13 C 0.069 3.931 14 N -0.684 5.684 15 C 0.068 3.932 16 C -0.041 4.041 17 C 0.295 3.705 18 N -0.538 5.538 19 C 0.205 3.795 20 N -0.325 5.325 21 N -0.483 5.483 22 H 0.440 0.560 23 H 0.045 0.955 24 H 0.060 0.940 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.070 0.930 28 H 0.035 0.965 29 H 0.012 0.988 30 H 0.011 0.989 31 H 0.261 0.739 32 H 0.024 0.976 33 H 0.069 0.931 34 H 0.338 0.662 35 H 0.026 0.974 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.084 0.916 39 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.962 0.360 21.792 21.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.050 4.050 3 C -0.188 4.188 4 C -0.043 4.043 5 C -0.545 4.545 6 H 0.096 0.904 7 C -0.136 4.136 8 N -0.546 5.546 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.192 1.192 13 C -0.060 4.060 14 N -0.316 5.316 15 C -0.063 4.063 16 C -0.082 4.082 17 C 0.016 3.984 18 N -0.266 5.266 19 C -0.099 4.099 20 N -0.153 5.153 21 N -0.202 5.202 22 H 0.285 0.715 23 H 0.064 0.936 24 H 0.079 0.921 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.089 0.911 28 H 0.054 0.946 29 H 0.030 0.970 30 H 0.029 0.971 31 H 0.071 0.929 32 H 0.042 0.958 33 H 0.087 0.913 34 H 0.157 0.843 35 H 0.044 0.956 36 H 0.105 0.895 37 H 0.129 0.871 38 H 0.103 0.897 39 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 1.564 -0.246 22.110 22.166 hybrid contribution 1.762 -0.016 -0.243 1.779 sum 3.326 -0.263 21.866 22.119 Atomic orbital electron populations 1.21620 0.94428 1.00774 1.00711 1.20430 0.96293 0.95022 0.93230 1.21783 0.99566 0.96478 1.00968 1.19632 0.95803 0.95529 0.93304 1.21135 1.31445 1.13234 0.88684 0.90407 1.25015 0.95809 0.96733 0.96031 1.69902 1.46184 1.40647 0.97834 0.86852 0.81300 0.84086 0.77442 1.20392 1.21602 1.19199 1.22139 0.96329 0.98305 0.89220 1.60525 1.63702 1.06366 1.01040 1.21806 0.96777 0.99490 0.88212 1.20228 1.03417 0.97800 0.86738 1.24440 0.91964 0.89718 0.92324 1.70517 1.26637 1.13477 1.16015 1.26075 0.94221 0.98431 0.91137 1.78018 1.25820 0.97585 1.13897 1.48093 1.44214 1.12580 1.15268 0.71470 0.93623 0.92145 0.94135 0.94187 0.91124 0.94571 0.96971 0.97078 0.92886 0.95814 0.91296 0.84281 0.95581 0.89475 0.87058 0.89735 0.76541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.18 8.06 37.16 0.30 -1.88 16 2 C -0.05 -0.92 0.60 -154.51 -0.09 -1.01 16 3 C -0.13 -2.28 7.89 37.16 0.29 -1.99 16 4 C 0.00 -0.11 3.11 -27.88 -0.09 -0.20 16 5 C -0.51 -13.83 8.20 -34.44 -0.28 -14.11 16 6 H 0.08 2.26 5.92 -52.49 -0.31 1.95 16 7 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 8 N -0.91 -27.63 13.96 55.43 0.77 -26.86 16 9 Si 0.88 21.67 27.47 -169.99 -4.67 17.01 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 13 C 0.07 1.07 4.65 -3.83 -0.02 1.05 16 14 N -0.68 -8.50 5.71 -113.78 -0.65 -9.15 16 15 C 0.07 0.72 5.64 -3.83 -0.02 0.70 16 16 C -0.04 -0.33 6.10 -27.88 -0.17 -0.50 16 17 C 0.29 2.84 7.51 -155.70 -1.17 1.67 16 18 N -0.54 -6.20 11.16 -11.97 -0.13 -6.34 16 19 C 0.20 2.06 13.03 -91.81 -1.20 0.86 16 20 N -0.32 -3.44 12.80 29.29 0.37 -3.07 16 21 N -0.48 -4.15 7.45 32.62 0.24 -3.91 16 22 H 0.44 2.30 8.96 -182.33 -1.63 0.67 16 23 H 0.04 0.74 7.60 -51.93 -0.39 0.35 16 24 H 0.06 1.25 6.62 -51.93 -0.34 0.91 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 28 H 0.04 0.51 6.57 -51.93 -0.34 0.17 16 29 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 30 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.34 3.83 6.77 -39.29 -0.27 3.57 16 35 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.22 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 314.91 15.07 4.75 4.75 Total: -1.00 -32.35 314.91 -9.23 -41.58 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -7.37 Total: -0.35 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -2.54 Total: -13.66 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 0.61 Total: -49.32 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.35 -9.23 -41.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131678945.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.638 kcal (2) G-P(sol) polarization free energy of solvation -32.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds