Wall clock time and date at job start Sun Mar 29 2020 23:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46860 * 2 1 4 4 C 1.53002 * 109.46884 * 239.99880 * 2 1 3 5 5 C 1.50694 * 109.47120 * 60.00007 * 4 2 1 6 6 H 1.08002 * 120.00364 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00025 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00540 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99875 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47483 * 89.99684 * 9 7 5 11 11 H 1.48509 * 109.47270 * 209.99454 * 9 7 5 12 12 H 1.48498 * 109.47387 * 329.99395 * 9 7 5 13 13 C 1.52995 * 109.46732 * 119.99986 * 2 1 3 14 14 N 1.46899 * 109.47461 * 299.99799 * 13 2 1 15 15 C 1.46899 * 111.00541 * 180.02562 * 14 13 2 16 16 C 1.52996 * 109.47447 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.47202 * 179.97438 * 16 15 14 18 18 N 1.30829 * 125.96102 * 304.97821 * 17 16 15 19 19 C 1.33239 * 109.82920 * 179.97438 * 18 17 16 20 20 N 1.30714 * 108.94945 * 359.97438 * 19 18 17 21 21 N 1.34428 * 125.96139 * 124.94746 * 17 16 15 22 22 H 0.97003 * 126.82574 * 0.02562 * 21 17 16 23 23 H 1.09000 * 109.47303 * 300.00308 * 1 2 3 24 24 H 1.09005 * 109.47341 * 59.99883 * 1 2 3 25 25 H 1.09004 * 109.47295 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46536 * 180.02562 * 3 2 1 27 27 H 1.08995 * 109.46752 * 299.99589 * 3 2 1 28 28 H 1.08996 * 109.47336 * 60.00509 * 3 2 1 29 29 H 1.09002 * 109.46717 * 179.97438 * 4 2 1 30 30 H 1.08995 * 109.47132 * 300.00010 * 4 2 1 31 31 H 0.96997 * 120.01041 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.47279 * 180.02562 * 13 2 1 33 33 H 1.08999 * 109.47882 * 59.99908 * 13 2 1 34 34 H 1.00900 * 110.99930 * 303.95899 * 14 13 2 35 35 H 1.09002 * 109.46877 * 59.99683 * 15 14 13 36 36 H 1.09002 * 109.46874 * 300.00278 * 15 14 13 37 37 H 1.08993 * 109.47163 * 59.99888 * 16 15 14 38 38 H 1.09002 * 109.47221 * 299.99955 * 16 15 14 39 39 H 1.08002 * 125.53210 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8711 -0.4817 -3.7319 8 7 1.4332 0.1385 -4.8058 9 14 2.9450 -2.0005 -3.9033 10 1 2.0864 -3.2113 -3.9492 11 1 3.7373 -1.9078 -5.1559 12 1 3.8651 -2.0899 -2.7411 13 6 2.0399 -0.7212 1.2492 14 7 1.5503 -0.0288 2.4487 15 6 2.0217 -0.6945 3.6704 16 6 1.4921 0.0533 4.8956 17 6 1.9752 -0.6300 6.1488 18 7 1.8049 -1.8917 6.4504 19 6 2.3613 -2.1529 7.6325 20 7 2.8963 -1.0564 8.1014 21 7 2.6568 -0.0498 7.1517 22 1 2.9295 0.8794 7.2081 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1299 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 -0.7209 -1.2495 30 1 1.6766 -1.7489 -1.2492 31 1 1.6674 -0.1929 -5.6868 32 1 3.1300 -0.7209 1.2496 33 1 1.6766 -1.7489 1.2493 34 1 1.8197 0.9436 2.4401 35 1 3.1116 -0.6940 3.6869 36 1 1.6585 -1.7221 3.6873 37 1 0.4023 0.0524 4.8787 38 1 1.8549 1.0811 4.8788 39 1 2.3691 -3.1148 8.1237 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131678945.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:41:16 Heat of formation + Delta-G solvation = 45.439902 kcal Electronic energy + Delta-G solvation = -18154.756842 eV Core-core repulsion = 15325.572617 eV Total energy + Delta-G solvation = -2829.184225 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.10730 -39.27261 -36.54035 -34.51281 -33.57566 -33.12247 -30.32558 -29.24547 -27.86441 -26.57710 -24.45755 -23.64114 -23.18058 -21.52191 -19.46401 -18.88146 -18.83514 -17.12863 -16.44741 -16.23180 -15.99336 -15.74888 -15.45373 -15.13109 -14.68040 -14.26294 -14.17033 -13.78520 -13.71481 -13.10574 -13.08479 -12.71629 -12.67227 -12.44517 -12.21204 -12.10695 -11.96896 -11.69283 -11.31813 -11.23754 -11.08754 -10.96905 -10.81248 -10.68373 -10.55955 -9.27738 -8.20252 -6.20150 0.57943 1.37161 1.38363 1.49132 1.69568 1.92251 2.40733 3.05221 3.15044 3.43084 3.77431 4.04668 4.10870 4.18327 4.26070 4.33343 4.38631 4.62615 4.77375 4.82174 4.96081 5.03604 5.04865 5.09246 5.14860 5.23017 5.24255 5.41507 5.45598 5.49760 5.57613 5.65483 5.81090 5.85845 6.08655 6.14405 6.43902 6.59741 6.87593 7.08328 7.42453 8.95946 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.043908 B = 0.003524 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.550820 B = 7944.167344 C = 8270.918648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.049 4.049 3 C -0.125 4.125 4 C -0.005 4.005 5 C -0.502 4.502 6 H 0.046 0.954 7 C 0.001 3.999 8 N -0.955 5.955 9 Si 0.939 3.061 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.250 1.250 13 C 0.081 3.919 14 N -0.681 5.681 15 C 0.074 3.926 16 C -0.032 4.032 17 C 0.294 3.706 18 N -0.570 5.570 19 C 0.198 3.802 20 N -0.347 5.347 21 N -0.474 5.474 22 H 0.454 0.546 23 H 0.071 0.929 24 H 0.026 0.974 25 H 0.035 0.965 26 H 0.043 0.957 27 H 0.035 0.965 28 H 0.073 0.927 29 H 0.012 0.988 30 H 0.010 0.990 31 H 0.262 0.738 32 H 0.026 0.974 33 H 0.063 0.937 34 H 0.348 0.652 35 H 0.027 0.973 36 H 0.070 0.930 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.840 0.053 24.056 24.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.050 4.050 3 C -0.182 4.182 4 C -0.043 4.043 5 C -0.540 4.540 6 H 0.065 0.935 7 C -0.195 4.195 8 N -0.597 5.597 9 Si 0.764 3.236 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.173 1.173 13 C -0.049 4.049 14 N -0.314 5.314 15 C -0.057 4.057 16 C -0.072 4.072 17 C 0.015 3.985 18 N -0.300 5.300 19 C -0.105 4.105 20 N -0.176 5.176 21 N -0.194 5.194 22 H 0.302 0.698 23 H 0.090 0.910 24 H 0.046 0.954 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.091 0.909 29 H 0.030 0.970 30 H 0.028 0.972 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.081 0.919 34 H 0.168 0.832 35 H 0.045 0.955 36 H 0.088 0.912 37 H 0.132 0.868 38 H 0.135 0.865 39 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 2.450 -0.526 24.407 24.536 hybrid contribution 1.432 0.152 -0.909 1.703 sum 3.883 -0.375 23.498 23.820 Atomic orbital electron populations 1.21528 0.94518 1.00344 1.00313 1.20363 0.96169 0.95578 0.92874 1.21702 0.99753 0.95667 1.01069 1.19617 0.95603 0.95397 0.93677 1.21447 1.29956 1.12139 0.90433 0.93543 1.25907 0.97623 1.00125 0.95835 1.70055 1.48399 1.42842 0.98435 0.85824 0.79750 0.80156 0.77878 1.19721 1.21512 1.17344 1.21840 0.96299 0.97754 0.88971 1.60410 1.63654 1.06807 1.00501 1.21710 0.96785 0.98870 0.88296 1.20201 1.03525 0.98839 0.84672 1.24635 0.91661 0.89479 0.92765 1.70513 1.27794 1.14760 1.16956 1.26642 0.93577 0.99372 0.90862 1.77969 1.26555 0.98182 1.14904 1.48038 1.43640 1.13083 1.14627 0.69800 0.90972 0.95443 0.94567 0.93784 0.94619 0.90864 0.96966 0.97210 0.92931 0.95541 0.91863 0.83153 0.95499 0.91166 0.86753 0.86543 0.74084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.97 8.06 71.98 0.58 -3.39 16 2 C -0.05 -1.77 0.60 -52.18 -0.03 -1.80 16 3 C -0.12 -4.16 7.89 71.98 0.57 -3.59 16 4 C -0.01 -0.23 3.11 29.85 0.09 -0.14 16 5 C -0.50 -27.91 8.20 25.60 0.21 -27.70 16 6 H 0.05 2.82 5.92 -2.91 -0.02 2.80 16 7 C 0.00 0.04 5.47 84.65 0.46 0.50 16 8 N -0.96 -59.95 13.96 21.45 0.30 -59.65 16 9 Si 0.94 44.70 27.47 68.60 1.88 46.58 16 10 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 12 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 13 C 0.08 2.31 4.65 86.30 0.40 2.71 16 14 N -0.68 -14.63 5.71 -513.90 -2.94 -17.57 16 15 C 0.07 1.35 5.64 86.30 0.49 1.84 16 16 C -0.03 -0.41 6.10 29.85 0.18 -0.23 16 17 C 0.29 4.94 7.51 138.23 1.04 5.98 16 18 N -0.57 -12.20 11.16 -191.78 -2.14 -14.34 16 19 C 0.20 3.67 13.03 180.77 2.36 6.03 16 20 N -0.35 -6.77 12.80 -61.24 -0.78 -7.55 16 21 N -0.47 -7.02 7.45 -50.71 -0.38 -7.40 16 22 H 0.45 3.52 8.96 -213.09 -1.91 1.61 16 23 H 0.07 2.20 7.60 -2.39 -0.02 2.18 16 24 H 0.03 1.14 6.62 -2.38 -0.02 1.13 16 25 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 26 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.03 1.43 6.62 -2.39 -0.02 1.41 16 28 H 0.07 1.87 6.57 -2.39 -0.02 1.85 16 29 H 0.01 0.55 7.20 -2.39 -0.02 0.53 16 30 H 0.01 0.44 7.57 -2.39 -0.02 0.42 16 31 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 32 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.35 6.40 6.77 -89.69 -0.61 5.79 16 35 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.24 2.67 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -71.13 314.91 0.77 -70.36 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -1.52 Total: 9.35 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: 6.35 Total: -19.78 kcal Atomic # 7 Polarization: -100.57 SS G_CDS: -5.94 Total: -106.50 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.58 kcal Total: -71.13 0.77 -70.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131678945.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.798 kcal (2) G-P(sol) polarization free energy of solvation -71.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds