Wall clock time and date at job start Sun Mar 29 2020 23:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99866 * 2 1 4 4 C 1.53000 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.46703 * 183.75317 * 4 3 2 6 6 N 1.46897 * 109.47195 * 63.75306 * 4 3 2 7 7 C 1.46892 * 111.00138 * 155.00064 * 6 4 3 8 8 C 1.52997 * 109.47410 * 180.02562 * 7 6 4 9 9 H 1.09002 * 109.47586 * 54.99733 * 8 7 6 10 10 C 1.47201 * 109.47077 * 295.00133 * 8 7 6 11 11 N 5.58798 * 142.05044 * 226.55109 * 2 1 3 12 12 C 1.52995 * 109.47602 * 175.00024 * 8 7 6 13 13 C 1.50701 * 109.47522 * 185.00222 * 12 8 7 14 14 H 1.07998 * 119.99925 * 359.97438 * 13 12 8 15 15 C 1.37873 * 119.99865 * 180.02562 * 13 12 8 16 16 N 1.31513 * 120.00257 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99894 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47238 * 89.99548 * 17 15 13 19 19 H 1.48500 * 109.47309 * 209.99901 * 17 15 13 20 20 H 1.48501 * 109.47060 * 329.99800 * 17 15 13 21 21 C 1.52996 * 109.46709 * 303.75489 * 4 3 2 22 22 C 1.53007 * 117.49958 * 133.67435 * 21 4 3 23 23 C 1.52999 * 117.50315 * 65.01156 * 21 4 3 24 24 H 1.09002 * 109.47039 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46966 * 300.00192 * 1 2 3 26 26 H 1.08999 * 109.47182 * 60.00144 * 1 2 3 27 27 H 1.09003 * 109.47104 * 59.99570 * 3 2 1 28 28 H 1.09004 * 109.46920 * 299.99769 * 3 2 1 29 29 H 1.00903 * 111.00097 * 278.95530 * 6 4 3 30 30 H 1.09003 * 109.47350 * 300.00199 * 7 6 4 31 31 H 1.09005 * 109.46925 * 60.00152 * 7 6 4 32 32 H 1.08999 * 109.47262 * 305.00164 * 12 8 7 33 33 H 1.09001 * 109.46964 * 64.99866 * 12 8 7 34 34 H 0.97006 * 119.99901 * 180.02562 * 16 15 13 35 35 H 1.09008 * 115.54882 * 279.33608 * 21 4 3 36 36 H 1.09002 * 117.49664 * 359.97438 * 22 21 4 37 37 H 1.08992 * 117.49844 * 145.01509 * 22 21 4 38 38 H 1.09000 * 117.49851 * 214.97475 * 23 21 4 39 39 H 1.08997 * 117.49628 * 359.97438 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 1 3.9785 2.1783 0.0666 6 7 3.9748 0.5358 -1.2431 7 6 5.3558 0.9115 -1.5735 8 6 5.7766 0.2182 -2.8708 9 1 5.0614 0.4558 -3.6583 10 6 5.8090 -1.2383 -2.6606 11 7 5.8354 -2.3633 -2.4948 12 6 7.1676 0.7052 -3.2815 13 6 7.5308 0.1172 -4.6206 14 1 6.8388 -0.5387 -5.1279 15 6 8.7469 0.4157 -5.1977 16 7 9.5897 1.2140 -4.5797 17 14 9.1973 -0.3139 -6.8573 18 1 8.7414 0.5964 -7.9384 19 1 10.6704 -0.4825 -6.9406 20 1 8.5383 -1.6355 -7.0124 21 6 3.9810 0.3453 1.1983 22 6 5.0166 -0.7525 0.9464 23 6 3.5586 -1.1250 1.2275 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6885 1.8465 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8777 -0.4667 -1.1814 30 1 5.4174 1.9921 -1.7029 31 1 6.0193 0.6040 -0.7651 32 1 7.1660 1.7930 -3.3508 33 1 7.8977 0.3898 -2.5361 34 1 10.4452 1.4242 -4.9859 35 1 4.0295 0.8740 2.1504 36 1 5.3801 -0.8769 -0.0736 37 1 5.7460 -0.9463 1.7328 38 1 3.3296 -1.5637 2.1987 39 1 2.9629 -1.4941 0.3926 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136660552.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:11 Heat of formation + Delta-G solvation = 0.481935 kcal Electronic energy + Delta-G solvation = -18750.536132 eV Core-core repulsion = 15887.109632 eV Total energy + Delta-G solvation = -2863.426500 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.50597 -37.33225 -36.38369 -34.29431 -33.24443 -31.64487 -29.39445 -26.62708 -25.84909 -23.43929 -22.91779 -22.10652 -21.75052 -19.52747 -17.23412 -16.71965 -16.34188 -16.17857 -15.58526 -15.27782 -14.64799 -14.59479 -14.07225 -13.29892 -13.15419 -12.72690 -12.58690 -12.31273 -12.21303 -11.94438 -11.77102 -11.68284 -11.39295 -11.18253 -11.07505 -10.90263 -10.67663 -10.52346 -10.22740 -10.16633 -9.89103 -9.62493 -9.48787 -9.19748 -8.43752 -8.26729 -6.07810 -4.10724 3.30724 3.37438 3.42310 3.59414 3.65657 3.71751 3.95127 4.24855 4.44028 4.75513 4.82574 4.95557 5.01638 5.14570 5.21165 5.26694 5.30304 5.38403 5.46680 5.56190 5.58303 5.68525 5.75263 5.81717 5.84440 6.03126 6.13835 6.21620 6.34200 6.42642 6.57798 7.07687 7.24324 7.45572 7.52203 7.56197 7.87480 8.25389 8.43618 8.93878 9.54676 11.03081 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.032995 B = 0.004546 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.399142 B = 6157.196418 C = 6223.298563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.378 6.378 3 C 0.077 3.923 4 C 0.117 3.883 5 H 0.097 0.903 6 N -0.682 5.682 7 C 0.058 3.942 8 C 0.006 3.994 9 H 0.110 0.890 10 C 0.238 3.762 11 N -0.473 5.473 12 C 0.033 3.967 13 C -0.526 4.526 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.182 4.182 22 C -0.196 4.196 23 C -0.158 4.158 24 H 0.080 0.920 25 H 0.035 0.965 26 H 0.039 0.961 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.346 0.654 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.040 0.960 33 H 0.024 0.976 34 H 0.262 0.738 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.971 2.933 11.513 19.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.296 6.296 3 C 0.000 4.000 4 C 0.007 3.993 5 H 0.115 0.885 6 N -0.315 5.315 7 C -0.072 4.072 8 C -0.016 4.016 9 H 0.128 0.872 10 C -0.079 4.079 11 N -0.150 5.150 12 C -0.006 4.006 13 C -0.564 4.564 14 H 0.075 0.925 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.204 1.204 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.202 4.202 22 C -0.233 4.233 23 C -0.195 4.195 24 H 0.099 0.901 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.166 0.834 30 H 0.109 0.891 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.109 0.891 38 H 0.104 0.896 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.927 1.619 11.326 18.807 hybrid contribution 0.722 -0.213 -0.300 0.810 sum -14.205 1.406 11.026 18.037 Atomic orbital electron populations 1.22681 0.82026 1.02316 0.99507 1.87960 1.18717 1.27687 1.95276 1.22550 0.92818 0.84902 0.99772 1.21194 0.93157 0.98035 0.86946 0.88523 1.60717 1.23107 1.14951 1.32707 1.22283 0.87815 1.01156 0.95932 1.19333 1.03659 0.80931 0.97645 0.87227 1.29389 0.91235 0.95346 0.91898 1.81100 1.10847 1.12931 1.10116 1.19157 0.87034 0.97507 0.96879 1.21153 1.02122 1.29258 1.03844 0.92515 1.24945 0.96299 0.94996 0.97697 1.69940 1.08915 1.35743 1.38475 0.86598 0.77609 0.79707 0.84213 1.20446 1.21184 1.19880 1.22937 1.04741 0.91992 1.00484 1.23286 0.92985 1.03604 1.03455 1.22910 0.96653 0.96799 1.03159 0.90107 0.94659 0.94264 0.93535 0.92417 0.83353 0.89081 0.93851 0.94225 0.95747 0.92828 0.88151 0.88124 0.89055 0.89597 0.87491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.32 7.68 -35.23 -0.27 -4.59 16 3 C 0.08 0.79 5.77 37.16 0.21 1.01 16 4 C 0.12 1.34 2.91 -67.72 -0.20 1.15 16 5 H 0.10 1.00 7.80 -51.93 -0.40 0.59 16 6 N -0.68 -9.42 5.99 -106.74 -0.64 -10.06 16 7 C 0.06 0.87 4.25 -3.83 -0.02 0.86 16 8 C 0.01 0.12 2.42 -93.41 -0.23 -0.11 16 9 H 0.11 1.99 8.14 -51.93 -0.42 1.56 16 10 C 0.24 4.91 12.07 -20.71 -0.25 4.66 16 11 N -0.47 -10.46 18.55 42.21 0.78 -9.68 16 12 C 0.03 0.77 4.42 -27.88 -0.12 0.64 16 13 C -0.53 -14.10 8.60 -34.44 -0.30 -14.40 16 14 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -25.64 13.29 55.43 0.74 -24.90 16 17 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 C -0.18 -2.10 5.77 -90.62 -0.52 -2.63 16 22 C -0.20 -2.63 8.77 -26.69 -0.23 -2.87 16 23 C -0.16 -1.96 8.67 -26.69 -0.23 -2.19 16 24 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 26 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.35 5.28 5.12 -39.29 -0.20 5.08 16 30 H 0.09 1.26 8.06 -51.93 -0.42 0.84 16 31 H 0.04 0.67 5.93 -51.93 -0.31 0.36 16 32 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.10 1.04 8.14 -51.92 -0.42 0.61 16 36 H 0.10 1.57 3.85 -51.93 -0.20 1.37 16 37 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.11 1.47 5.93 -51.93 -0.31 1.16 16 LS Contribution 318.62 15.07 4.80 4.80 Total: -1.00 -29.59 318.62 -6.50 -36.09 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.02 Total: 2.78 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -0.87 Total: -10.87 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.88 Total: -44.64 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.27 Total: -4.59 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.59 -6.50 -36.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136660552.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.577 kcal (2) G-P(sol) polarization free energy of solvation -29.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds