Wall clock time and date at job start Sun Mar 29 2020 23:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 113.99850 * 2 1 4 4 C 1.53006 * 109.46662 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46901 * 174.99704 * 4 3 2 6 6 N 1.46901 * 109.47310 * 294.99976 * 4 3 2 7 7 C 1.46895 * 111.00119 * 205.00062 * 6 4 3 8 8 C 1.52994 * 109.47270 * 179.97438 * 7 6 4 9 9 H 1.09009 * 109.47154 * 54.99975 * 8 7 6 10 10 C 1.47200 * 109.47451 * 295.00037 * 8 7 6 11 11 N 5.77898 * 120.21869 * 75.90144 * 2 1 3 12 12 C 1.52996 * 109.47347 * 174.99819 * 8 7 6 13 13 C 1.50702 * 109.47159 * 185.00014 * 12 8 7 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 8 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 12 8 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48501 * 109.47188 * 90.00793 * 17 15 13 19 19 H 1.48501 * 109.47085 * 210.00372 * 17 15 13 20 20 H 1.48498 * 109.47634 * 330.00608 * 17 15 13 21 21 C 1.53000 * 109.47096 * 55.00438 * 4 3 2 22 22 C 1.53001 * 117.50066 * 128.74952 * 21 4 3 23 23 C 1.52991 * 117.50207 * 60.08313 * 21 4 3 24 24 H 1.09000 * 109.46953 * 59.99617 * 1 2 3 25 25 H 1.08995 * 109.47311 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47004 * 299.99996 * 1 2 3 27 27 H 1.08998 * 109.47247 * 60.00695 * 3 2 1 28 28 H 1.09004 * 109.47373 * 299.99609 * 3 2 1 29 29 H 1.00905 * 110.99468 * 328.95746 * 6 4 3 30 30 H 1.08998 * 109.47324 * 59.99878 * 7 6 4 31 31 H 1.09002 * 109.47421 * 300.00055 * 7 6 4 32 32 H 1.09004 * 109.47066 * 65.00217 * 12 8 7 33 33 H 1.08994 * 109.47405 * 305.00047 * 12 8 7 34 34 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 35 35 H 1.09004 * 115.54702 * 274.41331 * 21 4 3 36 36 H 1.08999 * 117.49856 * 359.97438 * 22 21 4 37 37 H 1.09000 * 117.49698 * 145.02479 * 22 21 4 38 38 H 1.09006 * 117.50280 * 214.97820 * 23 21 4 39 39 H 1.09001 * 117.50026 * 0.02562 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.9785 2.1764 -0.0903 6 7 3.9779 0.5621 1.2543 7 6 5.3599 0.9447 1.5731 8 6 5.7839 0.2792 2.8838 9 1 5.6377 -0.7984 2.8081 10 6 4.9685 0.8085 3.9891 11 7 4.3376 1.2164 4.8433 12 6 7.2607 0.5758 3.1520 13 6 7.7104 -0.1791 4.3763 14 1 7.0128 -0.8080 4.9096 15 6 9.0142 -0.0719 4.8121 16 7 9.8637 0.6935 4.1626 17 14 9.5735 -1.0137 6.3252 18 1 10.0813 -2.3484 5.9179 19 1 10.6562 -0.2589 7.0059 20 1 8.4279 -1.1826 7.2548 21 6 3.9780 0.3197 -1.1827 22 6 5.0619 0.8834 -2.1037 23 6 3.6118 0.8025 -2.5875 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.3542 0.7945 2.0127 30 1 5.4218 2.0277 1.6793 31 1 6.0213 0.6201 0.7698 32 1 7.3925 1.6454 3.3159 33 1 7.8557 0.2637 2.2938 34 1 10.7809 0.7692 4.4694 35 1 3.9785 -0.7556 -1.0042 36 1 5.4594 1.8705 -1.8678 37 1 5.7751 0.1789 -2.5317 38 1 3.3717 0.0449 -3.3335 39 1 3.0560 1.7365 -2.6697 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136660590.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:14 Heat of formation + Delta-G solvation = -6.678573 kcal Electronic energy + Delta-G solvation = -18335.776542 eV Core-core repulsion = 15472.039539 eV Total energy + Delta-G solvation = -2863.737003 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.05297 -37.19767 -36.67836 -34.67569 -33.46219 -31.70148 -29.15238 -26.62512 -25.71243 -23.64401 -22.68672 -22.25308 -21.73492 -19.80261 -16.77693 -16.57817 -16.51659 -16.17057 -15.69852 -15.46317 -14.68170 -14.29936 -14.16767 -13.73131 -13.15846 -12.89381 -12.72200 -12.37610 -12.22807 -11.96898 -11.69603 -11.56855 -11.48123 -11.22472 -11.04943 -10.96183 -10.68763 -10.53703 -10.26803 -10.21029 -9.90437 -9.75768 -9.48866 -9.19415 -8.43279 -8.26497 -6.07388 -4.10197 3.31198 3.37763 3.42588 3.58388 3.61661 3.67817 3.84699 4.20217 4.44026 4.68823 4.80979 4.84426 5.03980 5.07857 5.18604 5.24238 5.30680 5.31612 5.37136 5.43198 5.54878 5.58769 5.63009 5.71881 5.83017 5.94425 6.12080 6.23049 6.32643 6.47009 6.58826 7.02362 7.22443 7.46316 7.50856 7.56300 7.87960 8.25894 8.42851 8.94393 9.55097 11.03543 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.027051 B = 0.004521 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.828922 B = 6192.099615 C = 6884.440714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.063 3.937 4 C 0.119 3.881 5 H 0.058 0.942 6 N -0.677 5.677 7 C 0.068 3.932 8 C 0.007 3.993 9 H 0.112 0.888 10 C 0.242 3.758 11 N -0.479 5.479 12 C 0.033 3.967 13 C -0.525 4.525 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.120 4.120 22 C -0.185 4.185 23 C -0.182 4.182 24 H 0.036 0.964 25 H 0.084 0.916 26 H 0.037 0.963 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.340 0.660 30 H 0.032 0.968 31 H 0.093 0.907 32 H 0.023 0.977 33 H 0.040 0.960 34 H 0.262 0.738 35 H 0.116 0.884 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.891 1.063 -13.969 19.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.014 4.014 4 C 0.009 3.991 5 H 0.076 0.924 6 N -0.309 5.309 7 C -0.062 4.062 8 C -0.015 4.015 9 H 0.129 0.871 10 C -0.074 4.074 11 N -0.156 5.156 12 C -0.006 4.006 13 C -0.564 4.564 14 H 0.075 0.925 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.204 1.204 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.138 4.138 22 C -0.222 4.222 23 C -0.220 4.220 24 H 0.055 0.945 25 H 0.103 0.897 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.158 0.842 30 H 0.050 0.950 31 H 0.111 0.889 32 H 0.042 0.958 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.134 0.866 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.374 0.987 -12.966 19.383 hybrid contribution 0.369 0.553 0.858 1.085 sum -14.005 1.540 -12.108 18.578 Atomic orbital electron populations 1.22730 0.81902 1.02626 0.99470 1.88034 1.18620 1.26682 1.95179 1.22710 0.93381 0.85476 0.99828 1.21145 0.91894 0.95365 0.90660 0.92437 1.60415 1.03633 1.62619 1.04219 1.22141 0.89439 0.97392 0.97199 1.19336 0.96113 1.00800 0.85252 0.87063 1.29415 0.91700 0.92255 0.94040 1.81089 1.12929 1.10825 1.10803 1.19159 0.85391 0.97946 0.98101 1.21159 0.95765 1.28103 1.11339 0.92505 1.24950 0.96742 0.95288 0.96983 1.69942 1.04784 1.38381 1.39978 0.86594 0.78445 0.79945 0.83120 1.20428 1.21198 1.19888 1.22133 1.01919 1.00741 0.89043 1.23074 0.91843 1.02632 1.04652 1.22890 0.98472 1.02680 0.97948 0.94541 0.89706 0.94416 0.93623 0.92920 0.84159 0.94969 0.88860 0.95815 0.94176 0.92834 0.86564 0.89066 0.88768 0.89047 0.89558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.37 -4.38 10.14 -35.23 -0.36 -4.73 16 3 C 0.06 0.67 5.26 37.16 0.20 0.87 16 4 C 0.12 1.39 2.64 -67.71 -0.18 1.21 16 5 H 0.06 0.65 7.56 -51.93 -0.39 0.25 16 6 N -0.68 -9.39 6.25 -106.73 -0.67 -10.06 16 7 C 0.07 1.03 4.92 -3.83 -0.02 1.01 16 8 C 0.01 0.13 2.42 -93.41 -0.23 -0.10 16 9 H 0.11 2.04 8.14 -51.92 -0.42 1.61 16 10 C 0.24 4.98 12.98 -20.71 -0.27 4.71 16 11 N -0.48 -10.57 18.55 42.21 0.78 -9.79 16 12 C 0.03 0.76 4.42 -27.88 -0.12 0.64 16 13 C -0.53 -14.13 8.60 -34.44 -0.30 -14.43 16 14 H 0.06 1.53 7.59 -52.49 -0.40 1.13 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 17 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 21 C -0.12 -1.36 4.76 -90.62 -0.43 -1.79 16 22 C -0.19 -1.90 10.18 -26.69 -0.27 -2.17 16 23 C -0.18 -1.74 9.79 -26.70 -0.26 -2.00 16 24 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.47 8.02 -51.93 -0.42 0.05 16 28 H 0.05 0.47 7.47 -51.93 -0.39 0.08 16 29 H 0.34 4.92 7.36 -39.29 -0.29 4.63 16 30 H 0.03 0.49 8.05 -51.93 -0.42 0.07 16 31 H 0.09 1.36 8.01 -51.93 -0.42 0.95 16 32 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.09 0.92 8.05 -51.93 -0.42 0.50 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.09 0.75 7.67 -51.93 -0.40 0.35 16 LS Contribution 332.89 15.07 5.02 5.02 Total: -1.00 -29.95 332.89 -6.85 -36.79 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -6.47 Total: 0.29 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -0.87 Total: -9.04 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 0.85 Total: -44.80 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: -0.36 Total: -4.73 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.95 -6.85 -36.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136660590.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.116 kcal (2) G-P(sol) polarization free energy of solvation -29.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds