Wall clock time and date at job start Sun Mar 29 2020 23:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 114.00080 * 2 1 4 4 C 1.52996 * 109.47427 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.47451 * 183.74940 * 4 3 2 6 6 N 1.46899 * 109.47430 * 63.74517 * 4 3 2 7 7 C 1.46894 * 111.00379 * 155.00010 * 6 4 3 8 8 C 1.53000 * 109.47492 * 180.02562 * 7 6 4 9 9 H 1.09011 * 109.46733 * 305.00285 * 8 7 6 10 10 C 1.47195 * 109.47084 * 64.99562 * 8 7 6 11 11 N 5.75434 * 120.26384 * 282.91875 * 2 1 3 12 12 C 1.52994 * 109.47370 * 185.00426 * 8 7 6 13 13 C 1.50702 * 109.47107 * 174.99694 * 12 8 7 14 14 H 1.07997 * 120.00095 * 359.97438 * 13 12 8 15 15 C 1.37880 * 119.99880 * 179.97438 * 13 12 8 16 16 N 1.31512 * 119.99927 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00027 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47036 * 90.00173 * 17 15 13 19 19 H 1.48505 * 109.47293 * 210.00385 * 17 15 13 20 20 H 1.48505 * 109.47140 * 330.00224 * 17 15 13 21 21 C 1.53006 * 109.46996 * 303.74898 * 4 3 2 22 22 C 1.53003 * 117.49834 * 133.55775 * 21 4 3 23 23 C 1.52993 * 117.49849 * 64.89484 * 21 4 3 24 24 H 1.09005 * 109.47143 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47116 * 299.99902 * 1 2 3 26 26 H 1.08994 * 109.47146 * 60.00211 * 1 2 3 27 27 H 1.09002 * 109.46578 * 299.99919 * 3 2 1 28 28 H 1.08996 * 109.47370 * 59.99850 * 3 2 1 29 29 H 1.00908 * 111.00240 * 278.95847 * 6 4 3 30 30 H 1.08996 * 109.47311 * 300.00328 * 7 6 4 31 31 H 1.09001 * 109.47296 * 60.00489 * 7 6 4 32 32 H 1.09002 * 109.47138 * 294.99970 * 12 8 7 33 33 H 1.09001 * 109.47698 * 54.99577 * 12 8 7 34 34 H 0.97008 * 120.00018 * 179.97438 * 16 15 13 35 35 H 1.08999 * 115.54652 * 279.22706 * 21 4 3 36 36 H 1.08991 * 117.49866 * 359.97438 * 22 21 4 37 37 H 1.09001 * 117.49264 * 145.01977 * 22 21 4 38 38 H 1.08998 * 117.49872 * 214.97784 * 23 21 4 39 39 H 1.09002 * 117.50165 * 359.97438 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9786 2.1782 0.0666 6 7 3.9748 0.5356 -1.2430 7 6 5.3559 0.9112 -1.5735 8 6 5.7767 0.2178 -2.8707 9 1 5.6307 -0.8580 -2.7715 10 6 4.9584 0.7231 -3.9850 11 7 4.3291 1.1112 -4.8443 12 6 7.2527 0.5086 -3.1490 13 6 7.6994 -0.2725 -4.3579 14 1 7.0005 -0.9126 -4.8757 15 6 9.0004 -0.1699 -4.8029 16 7 9.8516 0.6093 -4.1720 17 14 9.5539 -1.1375 -6.3018 18 1 9.3338 -0.3244 -7.5248 19 1 10.9977 -1.4618 -6.1762 20 1 8.7704 -2.3954 -6.3960 21 6 3.9810 0.3453 1.1985 22 6 5.0146 -0.7543 0.9461 23 6 3.5564 -1.1242 1.2290 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.6885 1.8463 -0.8900 28 1 1.6886 1.8464 0.8899 29 1 3.8776 -0.4669 -1.1812 30 1 5.4174 1.9917 -1.7031 31 1 6.0194 0.6039 -0.7651 32 1 7.3841 1.5743 -3.3360 33 1 7.8500 0.2150 -2.2857 34 1 10.7670 0.6812 -4.4848 35 1 4.0314 0.8746 2.1500 36 1 5.3767 -0.8799 -0.0742 37 1 5.7446 -0.9486 1.7319 38 1 3.3277 -1.5619 2.2007 39 1 2.9591 -1.4929 0.3951 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136660620.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:17 Heat of formation + Delta-G solvation = 0.682878 kcal Electronic energy + Delta-G solvation = -18660.254269 eV Core-core repulsion = 15796.836482 eV Total energy + Delta-G solvation = -2863.417787 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.47900 -37.28064 -36.39901 -34.24428 -33.24080 -31.64645 -29.37930 -26.62448 -25.86462 -23.44180 -22.91158 -22.15048 -21.63231 -19.56394 -17.49171 -16.57213 -16.41033 -15.97298 -15.50232 -15.22993 -14.75310 -14.49489 -14.00428 -13.69460 -13.03228 -12.63061 -12.46147 -12.33218 -12.11874 -11.87636 -11.83603 -11.56956 -11.41245 -11.22721 -11.06248 -10.87700 -10.66521 -10.51363 -10.21573 -10.18081 -9.89796 -9.62489 -9.49042 -9.19481 -8.44131 -8.23868 -6.07905 -4.10833 3.31335 3.37792 3.41269 3.70714 3.79191 3.89121 3.94601 4.24985 4.44014 4.75122 4.89666 4.96587 5.02216 5.14837 5.21087 5.27164 5.30382 5.38978 5.47315 5.56143 5.59338 5.69681 5.77344 5.79787 5.85074 6.01321 6.07431 6.16586 6.32380 6.44697 6.53332 7.07451 7.24120 7.44809 7.54236 7.58443 7.87576 8.25326 8.62731 8.93994 9.54586 11.02989 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.030060 B = 0.004697 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.256603 B = 5959.706405 C = 6394.366376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.377 6.377 3 C 0.077 3.923 4 C 0.119 3.881 5 H 0.094 0.906 6 N -0.683 5.683 7 C 0.058 3.942 8 C 0.009 3.991 9 H 0.097 0.903 10 C 0.257 3.743 11 N -0.480 5.480 12 C 0.032 3.968 13 C -0.526 4.526 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.273 1.273 21 C -0.183 4.183 22 C -0.194 4.194 23 C -0.160 4.160 24 H 0.081 0.919 25 H 0.035 0.965 26 H 0.038 0.962 27 H 0.055 0.945 28 H 0.046 0.954 29 H 0.347 0.653 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.026 0.974 33 H 0.037 0.963 34 H 0.262 0.738 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.281 -0.906 14.049 19.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.295 6.295 3 C 0.000 4.000 4 C 0.009 3.991 5 H 0.112 0.888 6 N -0.315 5.315 7 C -0.072 4.072 8 C -0.013 4.013 9 H 0.115 0.885 10 C -0.060 4.060 11 N -0.157 5.157 12 C -0.007 4.007 13 C -0.564 4.564 14 H 0.075 0.925 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.202 4.202 22 C -0.231 4.231 23 C -0.197 4.197 24 H 0.099 0.901 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.168 0.832 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.219 0.045 12.329 18.819 hybrid contribution 0.981 -0.864 0.222 1.326 sum -13.238 -0.819 12.551 18.260 Atomic orbital electron populations 1.22676 0.82053 1.02301 0.99494 1.87933 1.18685 1.27649 1.95276 1.22539 0.92947 0.84902 0.99654 1.21156 0.93024 0.97996 0.86955 0.88818 1.60652 1.23226 1.14901 1.32763 1.22264 0.88035 1.00959 0.95918 1.19214 0.96263 0.99672 0.86177 0.88482 1.28749 0.91434 0.92419 0.93416 1.80869 1.12652 1.10332 1.11858 1.19161 0.85353 0.98170 0.97974 1.21152 0.95876 1.26978 1.12382 0.92515 1.24946 0.96728 0.95330 0.96923 1.69940 1.04869 1.38081 1.40175 0.86601 0.77805 0.80490 0.83234 1.20655 1.21119 1.19740 1.22918 1.04929 0.92021 1.00380 1.23298 0.92851 1.03378 1.03598 1.22928 0.96717 0.96835 1.03189 0.90052 0.94674 0.94354 0.92663 0.93598 0.83188 0.90562 0.92456 0.95585 0.94434 0.92828 0.88301 0.87718 0.88984 0.89708 0.87345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.22 7.68 -35.23 -0.27 -4.49 16 3 C 0.08 0.82 5.77 37.16 0.21 1.03 16 4 C 0.12 1.34 2.91 -67.71 -0.20 1.15 16 5 H 0.09 1.01 7.80 -51.93 -0.40 0.61 16 6 N -0.68 -9.16 5.70 -106.73 -0.61 -9.77 16 7 C 0.06 0.86 4.06 -3.83 -0.02 0.84 16 8 C 0.01 0.16 2.35 -93.41 -0.22 -0.06 16 9 H 0.10 1.69 8.14 -51.92 -0.42 1.26 16 10 C 0.26 5.45 13.66 -20.84 -0.28 5.17 16 11 N -0.48 -11.09 18.52 42.06 0.78 -10.31 16 12 C 0.03 0.74 4.42 -27.89 -0.12 0.62 16 13 C -0.53 -14.07 8.60 -34.44 -0.30 -14.37 16 14 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -25.61 13.29 55.43 0.74 -24.87 16 17 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 C -0.18 -1.91 5.77 -90.62 -0.52 -2.44 16 22 C -0.19 -2.14 8.77 -26.69 -0.23 -2.37 16 23 C -0.16 -1.68 8.67 -26.69 -0.23 -1.91 16 24 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.35 4.63 6.05 -39.29 -0.24 4.39 16 30 H 0.08 1.16 8.05 -51.93 -0.42 0.74 16 31 H 0.06 0.79 5.94 -51.93 -0.31 0.49 16 32 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.10 1.26 4.79 -51.93 -0.25 1.01 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.11 1.25 5.93 -51.93 -0.31 0.94 16 LS Contribution 321.50 15.07 4.84 4.84 Total: -1.00 -30.05 321.50 -6.54 -36.60 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -6.11 Total: 0.90 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -0.90 Total: -9.31 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: 0.91 Total: -44.95 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: -0.27 Total: -4.49 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.05 -6.54 -36.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136660620.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.280 kcal (2) G-P(sol) polarization free energy of solvation -30.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds