Wall clock time and date at job start Sun Mar 29 2020 23:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 114.00128 * 2 1 4 4 C 1.53002 * 109.46653 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.46528 * 176.26881 * 4 3 2 6 6 N 1.46902 * 109.47304 * 296.26246 * 4 3 2 7 7 C 1.46896 * 111.00163 * 205.00661 * 6 4 3 8 8 C 1.53001 * 109.47236 * 180.02562 * 7 6 4 9 9 H 1.09005 * 109.46768 * 304.99714 * 8 7 6 10 10 C 1.47198 * 109.47121 * 64.99504 * 8 7 6 11 11 N 5.58781 * 142.05032 * 133.47751 * 2 1 3 12 12 C 1.52999 * 109.47064 * 185.00117 * 8 7 6 13 13 C 1.50699 * 109.46919 * 175.00113 * 12 8 7 14 14 H 1.07999 * 120.00135 * 359.97438 * 13 12 8 15 15 C 1.37878 * 120.00063 * 180.02562 * 13 12 8 16 16 N 1.31516 * 119.99975 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00205 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47051 * 59.99708 * 17 15 13 19 19 H 1.48502 * 109.47120 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47050 * 299.99300 * 17 15 13 21 21 C 1.52992 * 109.47430 * 56.26875 * 4 3 2 22 22 C 1.53001 * 117.49831 * 226.42258 * 21 4 3 23 23 C 1.52998 * 117.49655 * 295.08121 * 21 4 3 24 24 H 1.09003 * 109.47315 * 300.00272 * 1 2 3 25 25 H 1.09000 * 109.47602 * 59.99766 * 1 2 3 26 26 H 1.08997 * 109.47605 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46968 * 60.00406 * 3 2 1 28 28 H 1.09000 * 109.47029 * 299.99612 * 3 2 1 29 29 H 1.00894 * 110.99940 * 81.04731 * 6 4 3 30 30 H 1.09001 * 109.47103 * 300.00355 * 7 6 4 31 31 H 1.09004 * 109.47460 * 59.99832 * 7 6 4 32 32 H 1.09001 * 109.46925 * 294.99602 * 12 8 7 33 33 H 1.09001 * 109.47715 * 54.99424 * 12 8 7 34 34 H 0.96997 * 120.00633 * 180.02562 * 16 15 13 35 35 H 1.09002 * 115.55385 * 80.75236 * 21 4 3 36 36 H 1.08998 * 117.50047 * 215.00196 * 22 21 4 37 37 H 1.09006 * 117.49994 * 0.02562 * 22 21 4 38 38 H 1.08998 * 117.50086 * 359.97438 * 23 21 4 39 39 H 1.09004 * 117.50244 * 144.97691 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1845 -0.0006 5 1 3.9786 2.1782 -0.0675 6 7 3.9757 0.5346 1.2411 7 6 5.3571 0.9101 1.5707 8 6 5.7792 0.2149 2.8666 9 1 5.0646 0.4513 3.6551 10 6 5.8115 -1.2413 2.6542 11 7 5.8352 -2.3644 2.4936 12 6 7.1706 0.7016 3.2766 13 6 7.5351 0.1115 4.6144 14 1 6.8434 -0.5447 5.1218 15 6 8.7513 0.4101 5.1913 16 7 9.5934 1.2096 4.5738 17 14 9.2029 -0.3208 6.8500 18 1 9.2057 -1.8026 6.7537 19 1 10.5534 0.1515 7.2479 20 1 8.2089 0.1074 7.8667 21 6 3.9801 0.3459 -1.2006 22 6 5.0140 -0.7536 -0.9497 23 6 3.5556 -1.1237 -1.2314 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8784 -0.4677 1.1787 30 1 6.0199 0.6033 0.7616 31 1 5.4188 1.9906 1.7008 32 1 7.9000 0.3874 2.5300 33 1 7.1688 1.7893 3.3475 34 1 10.4491 1.4195 4.9794 35 1 4.0295 0.8756 -2.1519 36 1 5.7436 -0.9473 -1.7360 37 1 5.3771 -0.8798 0.0703 38 1 2.9600 -1.4932 -0.3967 39 1 3.3254 -1.5608 -2.2031 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136660653.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:20 Heat of formation + Delta-G solvation = 0.760086 kcal Electronic energy + Delta-G solvation = -18750.957734 eV Core-core repulsion = 15887.543295 eV Total energy + Delta-G solvation = -2863.414439 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.50687 -37.33780 -36.40510 -34.32155 -33.24446 -31.64586 -29.39371 -26.62672 -25.84812 -23.43914 -22.91494 -22.10684 -21.74829 -19.52714 -17.23405 -16.71731 -16.34107 -16.17886 -15.58438 -15.27754 -14.64916 -14.59495 -14.07468 -13.30318 -13.15420 -12.73408 -12.58978 -12.31533 -12.21224 -11.94914 -11.77327 -11.68314 -11.39359 -11.19257 -11.06579 -10.89814 -10.67539 -10.54472 -10.22184 -10.16629 -9.89167 -9.62433 -9.48694 -9.20842 -8.43238 -8.26654 -6.07492 -4.10533 3.32866 3.36848 3.40715 3.60701 3.67118 3.71749 3.95160 4.25003 4.44145 4.75553 4.82903 4.95616 5.01637 5.14606 5.21150 5.26659 5.30459 5.38398 5.46786 5.56231 5.58450 5.68608 5.75343 5.81829 5.84507 6.03134 6.13922 6.21725 6.34246 6.42775 6.57977 7.07742 7.24384 7.45662 7.52341 7.56299 7.87527 8.25567 8.43607 8.93797 9.54751 11.03370 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.033010 B = 0.004546 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.021748 B = 6157.595769 C = 6223.312404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.378 6.378 3 C 0.077 3.923 4 C 0.117 3.883 5 H 0.097 0.903 6 N -0.682 5.682 7 C 0.058 3.942 8 C 0.006 3.994 9 H 0.110 0.890 10 C 0.238 3.762 11 N -0.473 5.473 12 C 0.033 3.967 13 C -0.526 4.526 14 H 0.056 0.944 15 C 0.063 3.937 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.182 4.182 22 C -0.196 4.196 23 C -0.158 4.158 24 H 0.039 0.961 25 H 0.035 0.965 26 H 0.080 0.920 27 H 0.058 0.942 28 H 0.046 0.954 29 H 0.346 0.654 30 H 0.043 0.957 31 H 0.091 0.909 32 H 0.024 0.976 33 H 0.039 0.961 34 H 0.263 0.737 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.965 2.941 -11.508 19.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.296 6.296 3 C 0.000 4.000 4 C 0.007 3.993 5 H 0.115 0.885 6 N -0.315 5.315 7 C -0.072 4.072 8 C -0.016 4.016 9 H 0.128 0.872 10 C -0.078 4.078 11 N -0.150 5.150 12 C -0.005 4.005 13 C -0.565 4.565 14 H 0.074 0.926 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.202 4.202 22 C -0.233 4.233 23 C -0.195 4.195 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.099 0.901 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.166 0.834 30 H 0.061 0.939 31 H 0.109 0.891 32 H 0.042 0.958 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.119 0.881 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.923 1.637 -11.310 18.796 hybrid contribution 0.716 -0.226 0.295 0.807 sum -14.207 1.411 -11.015 18.032 Atomic orbital electron populations 1.22678 0.82029 1.02317 0.99507 1.87958 1.18715 1.27690 1.95274 1.22549 0.92816 0.84903 0.99770 1.21196 0.93156 0.98036 0.86948 0.88526 1.60717 1.23072 1.14927 1.32768 1.22282 0.87800 1.01147 0.95950 1.19335 1.03656 0.80981 0.97649 0.87234 1.29275 0.91274 0.95335 0.91947 1.80990 1.10805 1.13077 1.10080 1.19151 0.87022 0.97500 0.96861 1.21115 1.02134 1.29257 1.03951 0.92578 1.24944 0.96310 0.94963 0.97691 1.69927 1.08918 1.35611 1.38626 0.86657 0.77604 0.79640 0.84200 1.20278 1.21205 1.20024 1.22934 1.04756 0.91980 1.00483 1.23284 0.92999 1.03587 1.03454 1.22911 0.96637 0.96821 1.03156 0.94275 0.94654 0.90106 0.92413 0.93542 0.83357 0.93862 0.89085 0.95756 0.94233 0.92766 0.88148 0.89054 0.88130 0.87489 0.89594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.32 7.68 -35.23 -0.27 -4.59 16 3 C 0.08 0.79 5.77 37.16 0.21 1.01 16 4 C 0.12 1.34 2.90 -67.71 -0.20 1.15 16 5 H 0.10 1.00 7.80 -51.93 -0.40 0.59 16 6 N -0.68 -9.43 5.99 -106.72 -0.64 -10.07 16 7 C 0.06 0.87 4.25 -3.83 -0.02 0.86 16 8 C 0.01 0.11 2.42 -93.41 -0.23 -0.12 16 9 H 0.11 1.99 8.14 -51.93 -0.42 1.57 16 10 C 0.24 4.92 12.05 -20.80 -0.25 4.66 16 11 N -0.47 -10.45 18.53 42.11 0.78 -9.67 16 12 C 0.03 0.78 4.42 -27.88 -0.12 0.65 16 13 C -0.53 -14.13 8.60 -34.44 -0.30 -14.42 16 14 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 17 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 21 C -0.18 -2.10 5.77 -90.62 -0.52 -2.63 16 22 C -0.20 -2.63 8.77 -26.69 -0.23 -2.87 16 23 C -0.16 -1.96 8.67 -26.69 -0.23 -2.19 16 24 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 25 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.35 5.28 5.12 -39.29 -0.20 5.08 16 30 H 0.04 0.67 5.94 -51.93 -0.31 0.36 16 31 H 0.09 1.26 8.06 -51.93 -0.42 0.84 16 32 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.10 1.57 3.85 -51.93 -0.20 1.37 16 38 H 0.11 1.47 5.93 -51.93 -0.31 1.16 16 39 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 318.59 15.07 4.80 4.80 Total: -1.00 -29.56 318.59 -6.51 -36.06 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.02 Total: 2.81 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -0.87 Total: -10.87 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.88 Total: -44.64 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.27 Total: -4.59 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.56 -6.51 -36.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136660653.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.822 kcal (2) G-P(sol) polarization free energy of solvation -29.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds