Wall clock time and date at job start Mon Mar 30 2020 00:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00015 * 2 1 4 4 H 1.48504 * 109.46968 * 239.99848 * 3 2 1 5 5 H 1.48493 * 109.47214 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47442 * 119.99991 * 3 2 1 7 7 C 1.37879 * 120.00443 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00692 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99369 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46759 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46827 * 180.02562 * 10 9 7 12 12 N 1.46901 * 109.46837 * 180.02562 * 11 10 9 13 13 C 1.46898 * 110.99914 * 180.02562 * 12 11 10 14 14 H 1.09002 * 109.21546 * 34.43611 * 13 12 11 15 15 C 1.52818 * 109.24952 * 274.99725 * 13 12 11 16 16 C 1.53634 * 110.64964 * 185.84295 * 15 13 12 17 17 N 1.45536 * 107.85748 * 57.13292 * 16 15 13 18 18 C 1.46340 * 117.21914 * 174.45319 * 17 16 15 19 19 C 1.54802 * 105.96448 * 151.92486 * 18 17 16 20 20 C 1.55330 * 104.98902 * 356.35592 * 19 18 17 21 21 C 1.48670 * 109.70746 * 294.67419 * 17 16 15 22 22 H 1.09002 * 111.10683 * 308.09616 * 21 17 16 23 23 C 1.52366 * 107.34374 * 69.54943 * 21 17 16 24 24 H 0.96997 * 120.00071 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46668 * 60.00774 * 9 7 2 26 26 H 1.08988 * 109.47357 * 300.00273 * 9 7 2 27 27 H 1.09004 * 109.46675 * 60.01051 * 10 9 7 28 28 H 1.08997 * 109.47212 * 300.00756 * 10 9 7 29 29 H 1.08996 * 109.47100 * 60.00242 * 11 10 9 30 30 H 1.09002 * 109.46878 * 300.00310 * 11 10 9 31 31 H 1.00908 * 110.99815 * 303.95167 * 12 11 10 32 32 H 1.08996 * 109.24349 * 65.54455 * 15 13 12 33 33 H 1.09000 * 109.24354 * 306.14476 * 15 13 12 34 34 H 1.08999 * 109.78380 * 297.54125 * 16 15 13 35 35 H 1.08996 * 109.83118 * 176.74304 * 16 15 13 36 36 H 1.09001 * 110.14840 * 271.04924 * 18 17 16 37 37 H 1.08998 * 110.15340 * 32.79507 * 18 17 16 38 38 H 1.09001 * 110.33535 * 237.47619 * 19 18 17 39 39 H 1.09003 * 110.33241 * 115.22887 * 19 18 17 40 40 H 1.09006 * 110.90399 * 219.60840 * 20 19 18 41 41 H 1.08994 * 110.94294 * 96.01672 * 20 19 18 42 42 H 1.09002 * 109.83079 * 177.64066 * 23 21 17 43 43 H 1.09004 * 109.88757 * 56.72144 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4803 -4.9871 0.0020 12 7 2.4349 -6.1036 0.0024 13 6 1.7346 -7.3950 0.0023 14 1 0.8175 -7.3057 -0.5800 15 6 1.3836 -7.7778 1.4395 16 6 0.7798 -9.1896 1.4920 17 7 1.7416 -10.1085 0.9015 18 6 1.4255 -11.5362 0.9588 19 6 2.1241 -12.1764 -0.2654 20 6 2.7569 -10.9850 -1.0353 21 6 1.9115 -9.7970 -0.5422 22 1 0.9481 -9.7530 -1.0503 23 6 2.6381 -8.4610 -0.6362 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5575 -0.8881 26 1 0.6247 -2.5563 0.8918 27 1 2.8725 -3.6039 0.8911 28 1 2.8714 -3.6046 -0.8889 29 1 0.8533 -5.0450 -0.8877 30 1 0.8540 -5.0446 0.8923 31 1 3.0697 -6.0369 -0.7791 32 1 0.6617 -7.0636 1.8354 33 1 2.2866 -7.7504 2.0494 34 1 -0.1505 -9.2143 0.9246 35 1 0.5881 -9.4714 2.5273 36 1 1.8124 -11.9697 1.8811 37 1 0.3476 -11.6850 0.8965 38 1 1.3945 -12.6884 -0.8929 39 1 2.8984 -12.8708 0.0607 40 1 2.6508 -11.1175 -2.1121 41 1 3.8043 -10.8570 -0.7624 42 1 2.8215 -8.2126 -1.6815 43 1 3.5841 -8.5148 -0.0975 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158008811.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:04:39 Heat of formation + Delta-G solvation = -17.716586 kcal Electronic energy + Delta-G solvation = -18604.292009 eV Core-core repulsion = 15875.909456 eV Total energy + Delta-G solvation = -2728.382553 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.13381 -36.90797 -34.34005 -33.07441 -32.12572 -30.49444 -28.86971 -27.20934 -25.40256 -23.12084 -22.52178 -21.25547 -20.67062 -20.25229 -19.61560 -16.27085 -16.06749 -15.84445 -15.45346 -15.16771 -14.65676 -14.36642 -14.03617 -13.72238 -13.33576 -12.96678 -12.77575 -12.42057 -12.15407 -11.82214 -11.69149 -11.63656 -11.30160 -11.27338 -11.05459 -10.85794 -10.83116 -10.58171 -10.56042 -10.35262 -10.30419 -9.64181 -9.28117 -9.02204 -8.48086 -8.30940 -8.10642 -5.96252 -3.98276 3.36201 3.40041 3.43038 3.76038 4.21134 4.40239 4.48388 4.53492 4.69066 4.86479 4.93973 5.07012 5.17246 5.27077 5.32338 5.39382 5.42376 5.45331 5.55541 5.60519 5.65027 5.69773 5.80392 5.84769 5.87502 5.94048 5.97591 6.08688 6.19777 6.36348 6.44837 6.77087 6.80998 6.84599 7.10446 7.18600 7.43205 7.70400 7.72910 7.88108 8.04453 8.47892 9.08868 9.65479 11.15240 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.062541 B = 0.003086 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.602262 B = 9070.081386 C = 9281.248524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.060 3.940 12 N -0.687 5.687 13 C 0.088 3.912 14 H 0.034 0.966 15 C -0.102 4.102 16 C 0.062 3.938 17 N -0.536 5.536 18 C 0.049 3.951 19 C -0.128 4.128 20 C -0.115 4.115 21 C 0.068 3.932 22 H 0.052 0.948 23 C -0.106 4.106 24 H 0.260 0.740 25 H 0.013 0.987 26 H 0.015 0.985 27 H 0.056 0.944 28 H 0.044 0.956 29 H 0.022 0.978 30 H 0.066 0.934 31 H 0.338 0.662 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.030 0.970 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.036 0.964 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.756 -24.210 -0.820 24.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.145 4.145 11 C -0.069 4.069 12 N -0.317 5.317 13 C -0.022 4.022 14 H 0.052 0.948 15 C -0.141 4.141 16 C -0.067 4.067 17 N -0.261 5.261 18 C -0.079 4.079 19 C -0.166 4.166 20 C -0.153 4.153 21 C -0.040 4.040 22 H 0.070 0.930 23 C -0.144 4.144 24 H 0.070 0.930 25 H 0.031 0.969 26 H 0.034 0.966 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.040 0.960 30 H 0.084 0.916 31 H 0.156 0.844 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.048 0.952 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.054 0.946 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.094 -23.987 0.179 24.187 hybrid contribution -0.840 0.824 -1.268 1.730 sum 2.254 -23.163 -1.089 23.298 Atomic orbital electron populations 1.69956 1.06071 1.26642 1.51032 1.25032 0.94848 0.99252 0.95404 0.86653 0.79568 0.83119 0.78629 1.20274 1.21332 1.20205 1.21237 0.93038 0.91092 1.50359 0.92707 1.19059 0.94022 0.91402 0.97039 1.21621 0.99154 0.93011 1.00688 1.22168 0.94125 0.90911 0.99690 1.60578 1.20298 1.01095 1.49773 1.21543 0.95304 0.89453 0.95903 0.94773 1.21576 1.01716 0.93804 0.96979 1.21968 0.92543 0.92824 0.99345 1.62777 1.47263 1.02236 1.13834 1.22494 0.97984 0.88415 0.98999 1.22630 0.99841 0.97888 0.96275 1.22361 1.00044 0.93707 0.99187 1.22543 0.97852 0.95126 0.88490 0.93023 1.21707 0.99742 0.92781 1.00220 0.93004 0.96895 0.96623 0.92551 0.93709 0.95974 0.91601 0.84450 0.91607 0.90322 0.95227 0.90732 0.90562 0.94602 0.91657 0.91005 0.91202 0.90383 0.91794 0.89867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.29 55.43 0.74 -26.76 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.11 -2.28 5.41 -26.73 -0.14 -2.42 16 11 C 0.06 1.07 5.47 -3.82 -0.02 1.05 16 12 N -0.69 -10.36 6.31 -106.47 -0.67 -11.03 16 13 C 0.09 1.14 2.55 -67.48 -0.17 0.97 16 14 H 0.03 0.47 7.77 -51.93 -0.40 0.07 16 15 C -0.10 -1.29 5.52 -26.50 -0.15 -1.44 16 16 C 0.06 0.67 5.85 -4.23 -0.02 0.65 16 17 N -0.54 -5.64 4.65 -225.05 -1.05 -6.68 16 18 C 0.05 0.42 6.86 -3.18 -0.02 0.40 16 19 C -0.13 -0.94 6.99 -24.55 -0.17 -1.11 16 20 C -0.11 -0.93 6.61 -25.01 -0.17 -1.10 16 21 C 0.07 0.68 2.63 -66.57 -0.18 0.51 16 22 H 0.05 0.54 8.05 -51.93 -0.42 0.12 16 23 C -0.11 -1.16 4.91 -26.73 -0.13 -1.29 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.02 0.43 8.14 -51.94 -0.42 0.01 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.02 0.40 8.05 -51.93 -0.42 -0.02 16 30 H 0.07 1.21 7.51 -51.93 -0.39 0.82 16 31 H 0.34 4.76 8.33 -39.29 -0.33 4.44 16 32 H 0.07 0.87 7.56 -51.93 -0.39 0.48 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.03 0.32 8.04 -51.93 -0.42 -0.10 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.04 0.30 8.04 -51.93 -0.42 -0.12 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 332.67 15.07 5.01 5.01 Total: -1.00 -30.34 332.67 -10.93 -41.27 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -8.22 Total: -1.64 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -1.72 Total: -17.20 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: -0.98 Total: -44.48 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.34 -10.93 -41.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158008811.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.558 kcal (2) G-P(sol) polarization free energy of solvation -30.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds