Wall clock time and date at job start Mon Mar 30 2020 00:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00015 * 2 1 4 4 H 1.48504 * 109.46968 * 239.99848 * 3 2 1 5 5 H 1.48493 * 109.47214 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47442 * 119.99991 * 3 2 1 7 7 C 1.37879 * 120.00443 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00692 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99369 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46759 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46827 * 180.02562 * 10 9 7 12 12 N 1.46901 * 109.46837 * 180.02562 * 11 10 9 13 13 C 1.46898 * 110.99914 * 180.02562 * 12 11 10 14 14 H 1.09002 * 109.21546 * 34.43611 * 13 12 11 15 15 C 1.52818 * 109.24952 * 274.99725 * 13 12 11 16 16 C 1.53634 * 110.64964 * 185.84295 * 15 13 12 17 17 N 1.45536 * 107.85748 * 57.13292 * 16 15 13 18 18 C 1.46340 * 117.21914 * 174.45319 * 17 16 15 19 19 C 1.54802 * 105.96448 * 151.92486 * 18 17 16 20 20 C 1.55330 * 104.98902 * 356.35592 * 19 18 17 21 21 C 1.48670 * 109.70746 * 294.67419 * 17 16 15 22 22 H 1.09002 * 111.10683 * 308.09616 * 21 17 16 23 23 C 1.52366 * 107.34374 * 69.54943 * 21 17 16 24 24 H 0.96997 * 120.00071 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46668 * 60.00774 * 9 7 2 26 26 H 1.08988 * 109.47357 * 300.00273 * 9 7 2 27 27 H 1.09004 * 109.46675 * 60.01051 * 10 9 7 28 28 H 1.08997 * 109.47212 * 300.00756 * 10 9 7 29 29 H 1.08996 * 109.47100 * 60.00242 * 11 10 9 30 30 H 1.09002 * 109.46878 * 300.00310 * 11 10 9 31 31 H 1.00908 * 110.99815 * 303.95167 * 12 11 10 32 32 H 1.08996 * 109.24349 * 65.54455 * 15 13 12 33 33 H 1.09000 * 109.24354 * 306.14476 * 15 13 12 34 34 H 1.08999 * 109.78380 * 297.54125 * 16 15 13 35 35 H 1.08996 * 109.83118 * 176.74304 * 16 15 13 36 36 H 1.09001 * 110.14840 * 271.04924 * 18 17 16 37 37 H 1.08998 * 110.15340 * 32.79507 * 18 17 16 38 38 H 1.09001 * 110.33535 * 237.47619 * 19 18 17 39 39 H 1.09003 * 110.33241 * 115.22887 * 19 18 17 40 40 H 1.09006 * 110.90399 * 219.60840 * 20 19 18 41 41 H 1.08994 * 110.94294 * 96.01672 * 20 19 18 42 42 H 1.09002 * 109.83079 * 177.64066 * 23 21 17 43 43 H 1.09004 * 109.88757 * 56.72144 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4803 -4.9871 0.0020 12 7 2.4349 -6.1036 0.0024 13 6 1.7346 -7.3950 0.0023 14 1 0.8175 -7.3057 -0.5800 15 6 1.3836 -7.7778 1.4395 16 6 0.7798 -9.1896 1.4920 17 7 1.7416 -10.1085 0.9015 18 6 1.4255 -11.5362 0.9588 19 6 2.1241 -12.1764 -0.2654 20 6 2.7569 -10.9850 -1.0353 21 6 1.9115 -9.7970 -0.5422 22 1 0.9481 -9.7530 -1.0503 23 6 2.6381 -8.4610 -0.6362 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5575 -0.8881 26 1 0.6247 -2.5563 0.8918 27 1 2.8725 -3.6039 0.8911 28 1 2.8714 -3.6046 -0.8889 29 1 0.8533 -5.0450 -0.8877 30 1 0.8540 -5.0446 0.8923 31 1 3.0697 -6.0369 -0.7791 32 1 0.6617 -7.0636 1.8354 33 1 2.2866 -7.7504 2.0494 34 1 -0.1505 -9.2143 0.9246 35 1 0.5881 -9.4714 2.5273 36 1 1.8124 -11.9697 1.8811 37 1 0.3476 -11.6850 0.8965 38 1 1.3945 -12.6884 -0.8929 39 1 2.8984 -12.8708 0.0607 40 1 2.6508 -11.1175 -2.1121 41 1 3.8043 -10.8570 -0.7624 42 1 2.8215 -8.2126 -1.6815 43 1 3.5841 -8.5148 -0.0975 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158008811.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:04:39 Heat of formation + Delta-G solvation = -37.101761 kcal Electronic energy + Delta-G solvation = -18605.132613 eV Core-core repulsion = 15875.909456 eV Total energy + Delta-G solvation = -2729.223157 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.96229 -38.10094 -35.97099 -34.52851 -33.40307 -31.92506 -29.81181 -28.51287 -26.90878 -24.28077 -24.03144 -22.02083 -21.94551 -21.51318 -20.67889 -18.48070 -16.87925 -16.79097 -16.62713 -16.50653 -16.04962 -15.70314 -15.42220 -14.67613 -14.55557 -14.30540 -13.75266 -13.65778 -13.49417 -13.38961 -13.14282 -12.74600 -12.52764 -12.45151 -12.31478 -12.12700 -12.08911 -11.98965 -11.67100 -11.48448 -11.43835 -11.35043 -11.26015 -10.97860 -10.55579 -9.38009 -9.27024 -8.20559 -6.31982 1.39755 1.43353 1.51281 2.40899 2.98352 3.12326 3.14267 3.58592 3.74245 4.00077 4.01051 4.10677 4.23692 4.28229 4.33678 4.36819 4.40910 4.44148 4.57925 4.69216 4.70891 4.80040 4.86000 4.88132 4.95822 5.00528 5.04857 5.05947 5.11427 5.21297 5.23683 5.27418 5.35346 5.41193 5.51786 5.74077 5.84931 6.03843 6.09723 6.26847 6.31819 6.51496 6.84802 7.37314 8.91332 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.062541 B = 0.003086 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.602262 B = 9070.081386 C = 9281.248524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.026 3.974 10 C -0.092 4.092 11 C 0.074 3.926 12 N -0.687 5.687 13 C 0.088 3.912 14 H 0.028 0.972 15 C -0.099 4.099 16 C 0.067 3.933 17 N -0.547 5.547 18 C 0.045 3.955 19 C -0.124 4.124 20 C -0.112 4.112 21 C 0.067 3.933 22 H 0.048 0.952 23 C -0.098 4.098 24 H 0.264 0.736 25 H -0.010 1.010 26 H -0.010 1.010 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.020 0.980 30 H 0.057 0.943 31 H 0.345 0.655 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.029 0.971 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.038 0.962 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.989 -25.175 -1.316 25.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.012 4.012 10 C -0.130 4.130 11 C -0.055 4.055 12 N -0.318 5.318 13 C -0.022 4.022 14 H 0.046 0.954 15 C -0.138 4.138 16 C -0.061 4.061 17 N -0.273 5.273 18 C -0.082 4.082 19 C -0.162 4.162 20 C -0.150 4.150 21 C -0.042 4.042 22 H 0.066 0.934 23 C -0.136 4.136 24 H 0.073 0.927 25 H 0.008 0.992 26 H 0.008 0.992 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.076 0.924 31 H 0.164 0.836 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.056 0.944 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.342 -24.979 -0.320 25.355 hybrid contribution -1.253 1.094 -1.096 1.992 sum 3.089 -23.885 -1.416 24.125 Atomic orbital electron populations 1.70092 1.07859 1.27881 1.51677 1.26017 0.95804 1.03482 0.94659 0.85475 0.78263 0.77909 0.79256 1.19045 1.20741 1.19157 1.21686 0.93584 0.92405 1.50618 0.92165 1.18962 0.94409 0.93179 0.94624 1.21373 0.97991 0.92838 1.00757 1.21852 0.93981 0.90423 0.99244 1.60507 1.19836 1.01149 1.50294 1.21610 0.95391 0.88906 0.96243 0.95407 1.21522 1.00905 0.94893 0.96465 1.21867 0.92437 0.91888 0.99949 1.62779 1.47193 1.03193 1.14143 1.22582 0.98376 0.87277 0.99981 1.22634 1.00237 0.97667 0.95636 1.22360 0.99529 0.92983 1.00092 1.22566 0.97921 0.95276 0.88388 0.93408 1.21636 0.98901 0.92612 1.00484 0.92734 0.99177 0.99196 0.92932 0.92970 0.96196 0.92411 0.83578 0.92848 0.91488 0.95269 0.89996 0.90176 0.94409 0.90569 0.89952 0.89856 0.90579 0.90662 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.13 13.29 21.45 0.28 -57.85 16 2 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 3 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 7 C -0.54 -31.98 9.11 25.60 0.23 -31.75 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.03 1.42 4.97 29.85 0.15 1.56 16 10 C -0.09 -3.93 5.41 30.60 0.17 -3.77 16 11 C 0.07 2.68 5.47 86.30 0.47 3.15 16 12 N -0.69 -20.35 6.31 -490.78 -3.09 -23.44 16 13 C 0.09 2.24 2.55 45.07 0.11 2.35 16 14 H 0.03 0.76 7.77 -2.39 -0.02 0.74 16 15 C -0.10 -2.50 5.52 30.75 0.17 -2.33 16 16 C 0.07 1.41 5.85 86.77 0.51 1.92 16 17 N -0.55 -10.77 4.65 -865.92 -4.03 -14.79 16 18 C 0.05 0.70 6.86 87.02 0.60 1.30 16 19 C -0.12 -1.50 6.99 32.01 0.22 -1.28 16 20 C -0.11 -1.55 6.61 31.71 0.21 -1.34 16 21 C 0.07 1.22 2.63 44.67 0.12 1.34 16 22 H 0.05 0.92 8.05 -2.39 -0.02 0.91 16 23 C -0.10 -2.00 4.91 30.60 0.15 -1.85 16 24 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 25 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 26 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 27 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.02 0.72 8.05 -2.39 -0.02 0.71 16 30 H 0.06 2.17 7.51 -2.39 -0.02 2.15 16 31 H 0.35 9.34 8.33 -89.69 -0.75 8.60 16 32 H 0.05 1.45 7.56 -2.39 -0.02 1.43 16 33 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.03 0.62 8.04 -2.39 -0.02 0.60 16 35 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.04 0.57 8.04 -2.39 -0.02 0.55 16 38 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.08 0.94 8.14 -2.38 -0.02 0.93 16 41 H 0.08 1.10 8.10 -2.39 -0.02 1.08 16 42 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 Total: -1.00 -64.82 332.67 -1.04 -65.86 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.20 Total: 13.49 kcal Atomic # 6 Polarization: -33.93 SS G_CDS: 3.57 Total: -30.35 kcal Atomic # 7 Polarization: -89.25 SS G_CDS: -6.84 Total: -96.08 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -64.82 -1.04 -65.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158008811.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.763 kcal (2) G-P(sol) polarization free energy of solvation -64.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds