Wall clock time and date at job start Mon Mar 30 2020 00:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 119.99912 * 2 1 4 4 H 1.48497 * 109.47587 * 270.00028 * 3 2 1 5 5 H 1.48502 * 109.47287 * 30.00422 * 3 2 1 6 6 H 1.48508 * 109.47047 * 150.00176 * 3 2 1 7 7 C 1.37875 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00316 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99648 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46525 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46872 * 179.97438 * 10 9 7 12 12 N 1.46903 * 109.47403 * 180.02562 * 11 10 9 13 13 C 1.46894 * 111.00229 * 180.02562 * 12 11 10 14 14 H 1.09002 * 109.24391 * 324.99807 * 13 12 11 15 15 C 1.52822 * 109.24682 * 84.45644 * 13 12 11 16 16 C 1.53614 * 110.70663 * 66.46836 * 15 13 12 17 17 N 1.45667 * 107.77033 * 57.42822 * 16 15 13 18 18 C 1.47092 * 116.53499 * 177.29752 * 17 16 15 19 19 C 1.55195 * 103.52505 * 162.42398 * 18 17 16 20 20 C 1.55985 * 105.03840 * 335.47394 * 19 18 17 21 21 C 1.48723 * 109.34647 * 294.42652 * 17 16 15 22 22 H 1.09001 * 110.34324 * 309.51902 * 21 17 16 23 23 C 1.52251 * 107.49818 * 69.80318 * 21 17 16 24 24 H 0.97005 * 119.99975 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47124 * 60.00306 * 9 7 2 26 26 H 1.08998 * 109.47088 * 299.99400 * 9 7 2 27 27 H 1.08998 * 109.47394 * 59.99958 * 10 9 7 28 28 H 1.08994 * 109.47415 * 299.99878 * 10 9 7 29 29 H 1.08998 * 109.46911 * 59.99949 * 11 10 9 30 30 H 1.08994 * 109.47235 * 300.00275 * 11 10 9 31 31 H 1.00904 * 110.99856 * 56.04025 * 12 11 10 32 32 H 1.09007 * 109.22548 * 186.81908 * 15 13 12 33 33 H 1.08996 * 109.23212 * 306.18905 * 15 13 12 34 34 H 1.09002 * 109.82476 * 297.85462 * 16 15 13 35 35 H 1.08994 * 109.84065 * 177.01262 * 16 15 13 36 36 H 1.08998 * 110.61946 * 280.93781 * 18 17 16 37 37 H 1.09002 * 110.61311 * 43.76609 * 18 17 16 38 38 H 1.08999 * 110.34766 * 94.86743 * 19 18 17 39 39 H 1.08994 * 110.35211 * 217.03795 * 19 18 17 40 40 H 1.09003 * 111.03518 * 239.64180 * 20 19 18 41 41 H 1.09001 * 110.39183 * 116.68475 * 20 19 18 42 42 H 1.09007 * 109.83071 * 177.57435 * 23 21 17 43 43 H 1.08996 * 109.89593 * 56.64425 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 7 2.4347 -6.1037 -0.0018 13 6 1.7344 -7.3950 -0.0018 14 1 0.8224 -7.3091 0.5889 15 6 1.3712 -7.7710 -1.4378 16 6 2.6368 -8.0449 -2.2643 17 7 3.3815 -9.1053 -1.5988 18 6 4.6085 -9.5656 -2.2668 19 6 5.3752 -10.3125 -1.1431 20 6 4.8485 -9.6922 0.1876 21 6 3.8612 -8.6168 -0.2785 22 1 4.3700 -7.6594 -0.3908 23 6 2.6438 -8.4645 0.6230 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8726 -3.6047 0.8877 28 1 2.8711 -3.6039 -0.8922 29 1 0.8526 -5.0446 -0.8905 30 1 0.8545 -5.0449 0.8894 31 1 3.0703 -6.0366 0.7791 32 1 0.7477 -8.6652 -1.4280 33 1 0.8156 -6.9517 -1.8939 34 1 3.2464 -7.1428 -2.3169 35 1 2.3606 -8.3628 -3.2696 36 1 4.3685 -10.2450 -3.0847 37 1 5.1880 -8.7175 -2.6316 38 1 5.1604 -11.3804 -1.1829 39 1 6.4472 -10.1386 -1.2355 40 1 5.6611 -9.2424 0.7582 41 1 4.3363 -10.4483 0.7826 42 1 2.9576 -8.1479 1.6178 43 1 2.1095 -9.4123 0.6881 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158009118.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:04:47 Heat of formation + Delta-G solvation = -16.382776 kcal Electronic energy + Delta-G solvation = -18938.352567 eV Core-core repulsion = 16210.027853 eV Total energy + Delta-G solvation = -2728.324715 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.07510 -36.80302 -34.26756 -32.90055 -32.07431 -30.28626 -28.84801 -27.16184 -25.53116 -23.08487 -22.47062 -21.38937 -20.83287 -20.06378 -19.06054 -16.30488 -15.98816 -15.83426 -15.17623 -15.07201 -14.61211 -14.40259 -13.93112 -13.81464 -13.23695 -12.69857 -12.65140 -12.39030 -12.07725 -11.97617 -11.64522 -11.48153 -11.36197 -11.14388 -11.01002 -10.85880 -10.64022 -10.56698 -10.50018 -10.31833 -10.24310 -9.66380 -9.30308 -9.02899 -8.46404 -8.32743 -8.03884 -5.97945 -4.00000 3.33226 3.39158 3.42774 3.95776 4.39184 4.45927 4.52210 4.59771 4.86412 4.97170 5.01182 5.10350 5.31219 5.33677 5.37786 5.49914 5.54991 5.65540 5.68086 5.73178 5.78058 5.79518 5.84000 5.93090 5.98839 6.01566 6.05288 6.14404 6.17138 6.31538 6.38298 6.74378 6.82221 6.93002 7.16137 7.22923 7.40665 7.67933 7.70959 7.86168 8.02693 8.46032 9.07271 9.63879 11.13506 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.038236 B = 0.003587 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.124004 B = 7804.779980 C = 7992.940705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.106 4.106 11 C 0.060 3.940 12 N -0.687 5.687 13 C 0.084 3.916 14 H 0.042 0.958 15 C -0.099 4.099 16 C 0.063 3.937 17 N -0.526 5.526 18 C 0.042 3.958 19 C -0.121 4.121 20 C -0.119 4.119 21 C 0.066 3.934 22 H 0.064 0.936 23 C -0.105 4.105 24 H 0.260 0.740 25 H 0.015 0.985 26 H 0.013 0.987 27 H 0.043 0.957 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.023 0.977 31 H 0.336 0.664 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.039 0.961 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.356 -21.115 -1.148 22.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.144 4.144 11 C -0.069 4.069 12 N -0.319 5.319 13 C -0.026 4.026 14 H 0.060 0.940 15 C -0.137 4.137 16 C -0.065 4.065 17 N -0.251 5.251 18 C -0.087 4.087 19 C -0.159 4.159 20 C -0.157 4.157 21 C -0.042 4.042 22 H 0.082 0.918 23 C -0.143 4.143 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.032 0.968 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.041 0.959 31 H 0.154 0.846 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.057 0.943 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.904 -21.397 -1.830 22.558 hybrid contribution 0.547 1.687 0.735 1.920 sum 7.451 -19.710 -1.095 21.100 Atomic orbital electron populations 1.69971 1.06056 1.26532 1.51062 1.25033 0.94852 0.99259 0.95409 0.86597 0.79835 0.83485 0.78100 1.20663 1.21255 1.19893 1.21263 0.93031 0.91095 1.50291 0.92722 1.19062 0.94020 0.91398 0.97064 1.21608 0.99127 0.93108 1.00539 1.22155 0.94131 0.90817 0.99749 1.60627 1.20333 1.01270 1.49666 1.21589 0.95525 0.89450 0.96080 0.94033 1.21529 0.96796 1.00647 0.94759 1.21887 0.95312 0.92689 0.96654 1.63906 1.21053 1.36206 1.03929 1.22793 0.90557 0.98440 0.96870 1.22675 0.98996 0.99965 0.94233 1.22355 0.98244 0.98079 0.97038 1.22337 0.94437 0.97089 0.90385 0.91798 1.21687 0.95947 0.99174 0.97496 0.93051 0.96638 0.96842 0.93784 0.92738 0.91590 0.95877 0.84649 0.91782 0.91429 0.93218 0.91690 0.90639 0.94272 0.91239 0.91736 0.91409 0.91220 0.91794 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.22 5.41 -26.73 -0.14 -2.37 16 11 C 0.06 1.05 5.47 -3.82 -0.02 1.03 16 12 N -0.69 -9.93 5.20 -106.46 -0.55 -10.48 16 13 C 0.08 1.05 2.79 -67.46 -0.19 0.87 16 14 H 0.04 0.55 7.79 -51.93 -0.40 0.14 16 15 C -0.10 -1.23 5.63 -26.50 -0.15 -1.38 16 16 C 0.06 0.77 5.74 -4.17 -0.02 0.74 16 17 N -0.53 -5.99 4.85 -224.50 -1.09 -7.08 16 18 C 0.04 0.41 6.71 -2.56 -0.02 0.39 16 19 C -0.12 -1.02 7.08 -23.97 -0.17 -1.19 16 20 C -0.12 -1.08 6.73 -25.00 -0.17 -1.25 16 21 C 0.07 0.72 2.38 -66.95 -0.16 0.56 16 22 H 0.06 0.81 7.37 -51.93 -0.38 0.42 16 23 C -0.10 -1.13 5.03 -26.77 -0.13 -1.27 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.07 1.19 7.28 -51.93 -0.38 0.81 16 30 H 0.02 0.41 8.05 -51.93 -0.42 -0.01 16 31 H 0.34 4.63 8.27 -39.29 -0.32 4.30 16 32 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 33 H 0.07 0.90 7.26 -51.93 -0.38 0.53 16 34 H 0.05 0.70 7.79 -51.93 -0.40 0.29 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.60 8.00 -51.93 -0.42 0.19 16 42 H 0.06 0.64 8.04 -51.93 -0.42 0.22 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 330.28 15.07 4.98 4.98 Total: -1.00 -29.91 330.28 -10.81 -40.72 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -8.14 Total: -1.25 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -1.73 Total: -17.20 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: -0.91 Total: -44.19 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.91 -10.81 -40.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158009118.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.334 kcal (2) G-P(sol) polarization free energy of solvation -29.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds