Wall clock time and date at job start Mon Mar 30 2020 00:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 119.99912 * 2 1 4 4 H 1.48497 * 109.47587 * 270.00028 * 3 2 1 5 5 H 1.48502 * 109.47287 * 30.00422 * 3 2 1 6 6 H 1.48508 * 109.47047 * 150.00176 * 3 2 1 7 7 C 1.37875 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00316 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99648 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46525 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46872 * 179.97438 * 10 9 7 12 12 N 1.46903 * 109.47403 * 180.02562 * 11 10 9 13 13 C 1.46894 * 111.00229 * 180.02562 * 12 11 10 14 14 H 1.09002 * 109.24391 * 324.99807 * 13 12 11 15 15 C 1.52822 * 109.24682 * 84.45644 * 13 12 11 16 16 C 1.53614 * 110.70663 * 66.46836 * 15 13 12 17 17 N 1.45667 * 107.77033 * 57.42822 * 16 15 13 18 18 C 1.47092 * 116.53499 * 177.29752 * 17 16 15 19 19 C 1.55195 * 103.52505 * 162.42398 * 18 17 16 20 20 C 1.55985 * 105.03840 * 335.47394 * 19 18 17 21 21 C 1.48723 * 109.34647 * 294.42652 * 17 16 15 22 22 H 1.09001 * 110.34324 * 309.51902 * 21 17 16 23 23 C 1.52251 * 107.49818 * 69.80318 * 21 17 16 24 24 H 0.97005 * 119.99975 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47124 * 60.00306 * 9 7 2 26 26 H 1.08998 * 109.47088 * 299.99400 * 9 7 2 27 27 H 1.08998 * 109.47394 * 59.99958 * 10 9 7 28 28 H 1.08994 * 109.47415 * 299.99878 * 10 9 7 29 29 H 1.08998 * 109.46911 * 59.99949 * 11 10 9 30 30 H 1.08994 * 109.47235 * 300.00275 * 11 10 9 31 31 H 1.00904 * 110.99856 * 56.04025 * 12 11 10 32 32 H 1.09007 * 109.22548 * 186.81908 * 15 13 12 33 33 H 1.08996 * 109.23212 * 306.18905 * 15 13 12 34 34 H 1.09002 * 109.82476 * 297.85462 * 16 15 13 35 35 H 1.08994 * 109.84065 * 177.01262 * 16 15 13 36 36 H 1.08998 * 110.61946 * 280.93781 * 18 17 16 37 37 H 1.09002 * 110.61311 * 43.76609 * 18 17 16 38 38 H 1.08999 * 110.34766 * 94.86743 * 19 18 17 39 39 H 1.08994 * 110.35211 * 217.03795 * 19 18 17 40 40 H 1.09003 * 111.03518 * 239.64180 * 20 19 18 41 41 H 1.09001 * 110.39183 * 116.68475 * 20 19 18 42 42 H 1.09007 * 109.83071 * 177.57435 * 23 21 17 43 43 H 1.08996 * 109.89593 * 56.64425 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 7 2.4347 -6.1037 -0.0018 13 6 1.7344 -7.3950 -0.0018 14 1 0.8224 -7.3091 0.5889 15 6 1.3712 -7.7710 -1.4378 16 6 2.6368 -8.0449 -2.2643 17 7 3.3815 -9.1053 -1.5988 18 6 4.6085 -9.5656 -2.2668 19 6 5.3752 -10.3125 -1.1431 20 6 4.8485 -9.6922 0.1876 21 6 3.8612 -8.6168 -0.2785 22 1 4.3700 -7.6594 -0.3908 23 6 2.6438 -8.4645 0.6230 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8726 -3.6047 0.8877 28 1 2.8711 -3.6039 -0.8922 29 1 0.8526 -5.0446 -0.8905 30 1 0.8545 -5.0449 0.8894 31 1 3.0703 -6.0366 0.7791 32 1 0.7477 -8.6652 -1.4280 33 1 0.8156 -6.9517 -1.8939 34 1 3.2464 -7.1428 -2.3169 35 1 2.3606 -8.3628 -3.2696 36 1 4.3685 -10.2450 -3.0847 37 1 5.1880 -8.7175 -2.6316 38 1 5.1604 -11.3804 -1.1829 39 1 6.4472 -10.1386 -1.2355 40 1 5.6611 -9.2424 0.7582 41 1 4.3363 -10.4483 0.7826 42 1 2.9576 -8.1479 1.6178 43 1 2.1095 -9.4123 0.6881 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158009118.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:04:46 Heat of formation + Delta-G solvation = -35.113669 kcal Electronic energy + Delta-G solvation = -18939.164800 eV Core-core repulsion = 16210.027853 eV Total energy + Delta-G solvation = -2729.136947 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.98019 -37.97578 -35.95211 -34.40649 -33.33545 -31.74533 -29.81528 -28.40385 -27.10275 -24.30499 -24.00358 -22.27187 -21.90663 -21.54552 -20.07995 -18.49270 -17.05287 -16.77708 -16.57027 -16.17826 -15.99901 -15.71929 -15.35621 -14.80263 -14.38635 -14.34409 -13.62567 -13.58109 -13.51231 -13.26011 -13.15633 -12.75470 -12.64028 -12.46245 -12.26130 -12.21703 -12.01499 -11.89594 -11.61578 -11.41712 -11.34460 -11.26874 -11.24479 -10.97836 -10.56818 -9.48729 -9.15216 -8.21444 -6.32770 1.38950 1.40623 1.51799 2.39938 3.06799 3.11519 3.28731 3.63461 3.75030 4.04566 4.11076 4.13472 4.21836 4.25842 4.39305 4.41800 4.52137 4.62839 4.69291 4.73474 4.79917 4.83401 4.88726 4.95331 5.00645 5.04826 5.08321 5.09038 5.13393 5.17599 5.21939 5.28346 5.36057 5.43322 5.50933 5.73481 5.84311 6.06490 6.10575 6.26283 6.33060 6.51529 6.84150 7.36559 8.90534 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.038236 B = 0.003587 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.124004 B = 7804.779980 C = 7992.940705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.026 3.974 10 C -0.090 4.090 11 C 0.075 3.925 12 N -0.684 5.684 13 C 0.083 3.917 14 H 0.039 0.961 15 C -0.098 4.098 16 C 0.067 3.933 17 N -0.529 5.529 18 C 0.037 3.963 19 C -0.116 4.116 20 C -0.116 4.116 21 C 0.064 3.936 22 H 0.045 0.955 23 C -0.098 4.098 24 H 0.264 0.736 25 H -0.010 1.010 26 H -0.009 1.009 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.021 0.979 31 H 0.342 0.658 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.027 0.973 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.031 0.969 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.824 -22.053 -0.732 23.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.582 4.582 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.128 4.128 11 C -0.054 4.054 12 N -0.316 5.316 13 C -0.027 4.027 14 H 0.057 0.943 15 C -0.136 4.136 16 C -0.061 4.061 17 N -0.254 5.254 18 C -0.091 4.091 19 C -0.154 4.154 20 C -0.154 4.154 21 C -0.044 4.044 22 H 0.063 0.937 23 C -0.136 4.136 24 H 0.073 0.927 25 H 0.008 0.992 26 H 0.009 0.991 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.039 0.961 31 H 0.161 0.839 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.045 0.955 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.049 0.951 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.388 -22.359 -1.413 23.922 hybrid contribution 0.062 1.944 0.583 2.030 sum 8.449 -20.415 -0.830 22.110 Atomic orbital electron populations 1.70103 1.07824 1.27799 1.51705 1.26010 0.95807 1.03454 0.94689 0.85426 0.78667 0.78303 0.78529 1.19763 1.20606 1.18694 1.21700 0.93511 0.92437 1.50530 0.92298 1.18963 0.94410 0.93163 0.94648 1.21349 0.97935 0.93022 1.00497 1.21829 0.93968 0.90280 0.99303 1.60541 1.19747 1.01215 1.50098 1.21659 0.95754 0.88921 0.96363 0.94313 1.21510 0.96945 1.00544 0.94607 1.21787 0.95000 0.92179 0.97131 1.63945 1.21779 1.35453 1.04260 1.22893 0.90062 0.98446 0.97704 1.22679 0.99402 1.00213 0.93122 1.22362 0.98013 0.97585 0.97464 1.22353 0.94744 0.96981 0.90303 0.93680 1.21646 0.95486 0.98643 0.97789 0.92741 0.99208 0.99109 0.93165 0.93216 0.92395 0.96083 0.83930 0.90720 0.92876 0.95452 0.91097 0.89860 0.95109 0.90266 0.90647 0.90559 0.90455 0.90693 0.89879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.87 13.29 21.45 0.28 -57.59 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.54 -31.79 9.11 25.60 0.23 -31.56 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.03 1.40 4.97 29.85 0.15 1.55 16 10 C -0.09 -3.82 5.41 30.60 0.17 -3.66 16 11 C 0.08 2.65 5.47 86.30 0.47 3.12 16 12 N -0.68 -19.43 5.20 -490.73 -2.55 -21.98 16 13 C 0.08 2.01 2.79 45.08 0.13 2.13 16 14 H 0.04 0.98 7.79 -2.39 -0.02 0.96 16 15 C -0.10 -2.38 5.63 30.74 0.17 -2.20 16 16 C 0.07 1.62 5.74 86.74 0.50 2.12 16 17 N -0.53 -11.34 4.85 -864.20 -4.19 -15.53 16 18 C 0.04 0.67 6.71 87.02 0.58 1.26 16 19 C -0.12 -1.69 7.08 32.38 0.23 -1.46 16 20 C -0.12 -1.82 6.73 31.71 0.21 -1.60 16 21 C 0.06 1.30 2.38 44.40 0.11 1.41 16 22 H 0.05 1.09 7.37 -2.39 -0.02 1.08 16 23 C -0.10 -1.92 5.03 30.57 0.15 -1.77 16 24 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 25 H -0.01 -0.62 8.14 -2.39 -0.02 -0.63 16 26 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 27 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.05 2.14 8.14 -2.39 -0.02 2.13 16 29 H 0.06 2.13 7.28 -2.39 -0.02 2.11 16 30 H 0.02 0.75 8.05 -2.39 -0.02 0.73 16 31 H 0.34 9.06 8.27 -89.69 -0.74 8.32 16 32 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.05 1.43 7.26 -2.39 -0.02 1.42 16 34 H 0.03 0.78 7.79 -2.39 -0.02 0.76 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.08 1.11 8.00 -2.39 -0.02 1.09 16 42 H 0.07 1.33 8.04 -2.38 -0.02 1.31 16 43 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -64.05 330.28 -0.66 -64.71 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.21 Total: 13.72 kcal Atomic # 6 Polarization: -33.88 SS G_CDS: 3.56 Total: -30.32 kcal Atomic # 7 Polarization: -88.65 SS G_CDS: -6.46 Total: -95.10 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -64.05 -0.66 -64.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158009118.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.594 kcal (2) G-P(sol) polarization free energy of solvation -64.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds