Wall clock time and date at job start Sun Mar 29 2020 23:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47473 * 180.02562 * 3 2 1 5 5 C 1.35489 * 126.98009 * 269.68866 * 4 3 2 6 6 C 1.50696 * 126.34855 * 359.97152 * 5 4 3 7 7 N 1.30526 * 107.30563 * 179.83403 * 5 4 3 8 8 N 1.28598 * 109.66999 * 0.43700 * 7 5 4 9 9 C 1.30517 * 109.67586 * 359.72178 * 8 7 5 10 10 C 1.50694 * 126.34665 * 179.97438 * 9 8 7 11 11 N 1.46898 * 109.47421 * 270.04377 * 10 9 8 12 12 C 1.46900 * 111.00250 * 293.95685 * 11 10 9 13 13 C 1.46907 * 111.00218 * 169.99967 * 11 10 9 14 14 C 1.50694 * 109.47062 * 190.00156 * 13 11 10 15 15 H 1.08000 * 120.00570 * 0.02562 * 14 13 11 16 16 C 1.37879 * 119.99757 * 179.97438 * 14 13 11 17 17 N 1.31518 * 120.00045 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00036 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46976 * 90.00526 * 18 16 14 20 20 H 1.48500 * 109.47023 * 210.00155 * 18 16 14 21 21 H 1.48504 * 109.47004 * 330.00346 * 18 16 14 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 26 26 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 27 27 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 28 28 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 29 29 H 1.09010 * 109.47033 * 90.00011 * 6 5 4 30 30 H 1.08997 * 109.47664 * 210.00106 * 6 5 4 31 31 H 1.09000 * 109.47271 * 330.00668 * 6 5 4 32 32 H 1.08997 * 109.47545 * 30.04619 * 10 9 8 33 33 H 1.09004 * 109.47281 * 150.04791 * 10 9 8 34 34 H 1.08996 * 109.47311 * 59.99369 * 12 11 10 35 35 H 1.08999 * 109.47210 * 179.97438 * 12 11 10 36 36 H 1.09004 * 109.46741 * 299.99859 * 12 11 10 37 37 H 1.08998 * 109.46954 * 310.00319 * 13 11 10 38 38 H 1.09006 * 109.46788 * 70.00041 * 13 11 10 39 39 H 0.97003 * 119.99979 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.3204 1.4484 1.0814 6 6 3.8887 1.4566 2.5251 7 7 5.5493 1.4425 0.6414 8 7 5.5487 1.4427 -0.6445 9 6 4.3195 1.4427 -1.0834 10 6 3.8865 1.4435 -2.5268 11 7 3.7466 2.8287 -2.9954 12 6 2.6469 3.5110 -2.3003 13 6 3.5584 2.8754 -4.4516 14 6 3.6644 4.3017 -4.9263 15 1 3.8532 5.0942 -4.2173 16 6 3.5215 4.5948 -6.2659 17 7 3.2922 3.6297 -7.1294 18 14 3.6522 6.3629 -6.8543 19 1 5.0654 6.6687 -7.1930 20 1 2.8035 6.5478 -8.0587 21 1 3.1917 7.2778 -5.7790 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8934 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 3.7843 0.4308 2.8790 30 1 4.6374 1.9735 3.1254 31 1 2.9321 1.9711 2.6154 32 1 4.6342 0.9294 -3.1308 33 1 2.9293 0.9302 -2.6193 34 1 2.8462 3.5230 -1.2288 35 1 2.5657 4.5347 -2.6659 36 1 1.7131 2.9818 -2.4903 37 1 4.3264 2.2730 -4.9367 38 1 2.5740 2.4808 -4.7036 39 1 3.1913 3.8360 -8.0719 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160890064.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:44:57 Heat of formation + Delta-G solvation = 73.664669 kcal Electronic energy + Delta-G solvation = -19045.946100 eV Core-core repulsion = 16217.985792 eV Total energy + Delta-G solvation = -2827.960308 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.93555 -37.02586 -36.10840 -32.90182 -32.79354 -31.97909 -28.93253 -27.39090 -26.74289 -26.28386 -24.09938 -22.37609 -21.29939 -20.68483 -19.86810 -17.02707 -16.35203 -16.22371 -15.56359 -14.95886 -14.56872 -14.24934 -14.13268 -13.87186 -13.70050 -13.02450 -12.90939 -12.69695 -12.47866 -12.32940 -12.04882 -11.87087 -11.57668 -11.32229 -11.17349 -11.11151 -10.88835 -10.70891 -10.57709 -10.01335 -9.99391 -9.94362 -9.32966 -8.75262 -8.47176 -7.42355 -6.07174 -4.08639 1.98092 2.56855 3.14720 3.31142 3.37236 3.40463 4.35087 4.38840 4.39493 4.49097 4.58512 4.83983 4.92221 4.95583 5.01680 5.12947 5.28326 5.29171 5.34653 5.37739 5.57952 5.61262 5.69699 5.78402 5.87802 5.93964 5.98024 6.08114 6.21716 6.42303 6.54179 7.04909 7.14611 7.18413 7.70752 7.95213 8.06042 8.42318 8.97991 9.05606 9.55726 11.03678 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.026584 B = 0.005207 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.999727 B = 5376.355684 C = 5871.572266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.092 3.908 4 N -0.469 5.469 5 C 0.158 3.842 6 C -0.061 4.061 7 N -0.299 5.299 8 N -0.283 5.283 9 C 0.204 3.796 10 C 0.137 3.863 11 N -0.530 5.530 12 C 0.033 3.967 13 C 0.195 3.805 14 C -0.509 4.509 15 H 0.064 0.936 16 C 0.057 3.943 17 N -0.898 5.898 18 Si 0.899 3.101 19 H -0.279 1.279 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.062 0.938 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.106 0.894 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.042 0.958 34 H 0.039 0.961 35 H 0.081 0.919 36 H 0.014 0.986 37 H 0.036 0.964 38 H -0.006 1.006 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.704 -6.847 16.486 19.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 C -0.030 4.030 4 N -0.161 5.161 5 C -0.109 4.109 6 C -0.120 4.120 7 N -0.140 5.140 8 N -0.123 5.123 9 C -0.064 4.064 10 C 0.007 3.993 11 N -0.256 5.256 12 C -0.116 4.116 13 C 0.070 3.930 14 C -0.547 4.547 15 H 0.082 0.918 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.727 3.273 19 H -0.205 1.205 20 H -0.213 1.213 21 H -0.199 1.199 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.124 0.876 28 H 0.112 0.888 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.123 0.877 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.100 0.900 36 H 0.032 0.968 37 H 0.054 0.946 38 H 0.012 0.988 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.787 -6.631 16.386 18.599 hybrid contribution -2.106 0.531 -0.634 2.263 sum -7.893 -6.099 15.752 18.644 Atomic orbital electron populations 1.21693 0.94004 1.02566 1.02454 1.21885 0.97052 0.95337 1.03404 1.22241 0.75977 0.99133 1.05695 1.46169 1.08434 1.55006 1.06527 1.24674 0.87826 1.06164 0.92275 1.20126 1.02138 1.03452 0.86298 1.74233 1.17088 1.18884 1.03765 1.74261 1.17240 1.18363 1.02402 1.24917 0.86927 1.02518 0.92011 1.20439 1.00221 0.93359 0.85320 1.62073 1.43377 1.10696 1.09405 1.22410 0.91119 1.01243 0.96796 1.19788 0.95690 0.98392 0.79098 1.21108 1.48504 0.92548 0.92551 0.91820 1.24969 0.95267 0.97559 0.96656 1.69952 1.49356 1.31805 1.02619 0.86475 0.78124 0.84555 0.78126 1.20497 1.21302 1.19902 0.91865 0.92310 0.91958 0.91262 0.90966 0.87643 0.88758 0.90118 0.88993 0.90870 0.87710 0.94057 0.94195 0.89991 0.96806 0.94623 0.98778 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.14 -1.20 6.26 -26.73 -0.17 -1.36 16 3 C 0.09 0.95 4.95 -4.04 -0.02 0.93 16 4 N -0.47 -6.71 2.37 -110.67 -0.26 -6.97 16 5 C 0.16 2.28 8.03 -154.99 -1.24 1.04 16 6 C -0.06 -0.54 10.24 36.00 0.37 -0.17 16 7 N -0.30 -5.59 12.21 32.79 0.40 -5.18 16 8 N -0.28 -5.82 12.21 32.79 0.40 -5.42 16 9 C 0.20 3.66 6.65 -154.99 -1.03 2.63 16 10 C 0.14 2.52 5.20 -4.98 -0.03 2.49 16 11 N -0.53 -11.45 4.74 -245.83 -1.17 -12.62 16 12 C 0.03 0.62 7.81 60.06 0.47 1.09 16 13 C 0.19 4.95 4.72 -4.98 -0.02 4.92 16 14 C -0.51 -14.13 8.46 -34.44 -0.29 -14.42 16 15 H 0.06 1.77 7.12 -52.49 -0.37 1.40 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -26.22 13.29 55.43 0.74 -25.49 16 18 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 22 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 23 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.11 1.19 4.70 -51.93 -0.24 0.95 16 28 H 0.09 0.74 7.19 -51.93 -0.37 0.37 16 29 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.49 7.21 -51.93 -0.37 0.12 16 32 H 0.10 1.96 7.93 -51.93 -0.41 1.55 16 33 H 0.04 0.67 7.83 -51.93 -0.41 0.26 16 34 H 0.04 0.68 5.85 -51.93 -0.30 0.37 16 35 H 0.08 1.67 6.76 -51.93 -0.35 1.32 16 36 H 0.01 0.23 7.16 -51.93 -0.37 -0.14 16 37 H 0.04 0.97 7.93 -51.93 -0.41 0.56 16 38 H -0.01 -0.15 8.12 -51.93 -0.42 -0.57 16 39 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 316.49 15.07 4.77 4.77 Total: -1.00 -33.15 316.49 -7.98 -41.12 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: -6.14 Total: -4.71 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -1.69 Total: -2.01 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: 0.11 Total: -55.68 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.15 -7.98 -41.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160890064.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.786 kcal (2) G-P(sol) polarization free energy of solvation -33.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds