Wall clock time and date at job start Sun Mar 29 2020 23:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47239 * 2 1 4 4 C 1.52996 * 109.47509 * 239.99716 * 2 1 3 5 5 C 1.50703 * 109.47178 * 60.00427 * 4 2 1 6 6 H 1.07996 * 119.99914 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00225 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99955 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 119.99858 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47500 * 90.00253 * 9 7 5 11 11 H 1.48501 * 109.46855 * 210.00307 * 9 7 5 12 12 H 1.48497 * 109.47264 * 329.99955 * 9 7 5 13 13 C 1.52998 * 109.46919 * 119.99614 * 2 1 3 14 14 N 1.46896 * 109.47432 * 300.00333 * 13 2 1 15 15 C 1.46900 * 111.00259 * 180.02562 * 14 13 2 16 16 C 1.52999 * 109.47152 * 179.97438 * 15 14 13 17 17 N 1.46500 * 109.47084 * 179.97438 * 16 15 14 18 18 C 1.34429 * 126.81895 * 124.99739 * 17 16 15 19 19 N 1.30837 * 108.07952 * 180.02562 * 18 17 16 20 20 C 1.33246 * 109.82318 * 359.97438 * 19 18 17 21 21 N 1.30712 * 108.94935 * 0.27015 * 20 19 18 22 22 H 1.08997 * 109.47489 * 300.00634 * 1 2 3 23 23 H 1.09005 * 109.46746 * 60.00713 * 1 2 3 24 24 H 1.09000 * 109.47193 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47121 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.47052 * 299.99942 * 3 2 1 27 27 H 1.08997 * 109.46950 * 59.99602 * 3 2 1 28 28 H 1.09000 * 109.47351 * 180.02562 * 4 2 1 29 29 H 1.09000 * 109.47425 * 300.00510 * 4 2 1 30 30 H 0.97001 * 119.99808 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47194 * 180.02562 * 13 2 1 32 32 H 1.09003 * 109.47306 * 60.00336 * 13 2 1 33 33 H 1.00902 * 110.99889 * 303.95386 * 14 13 2 34 34 H 1.09002 * 109.47230 * 59.99541 * 15 14 13 35 35 H 1.08996 * 109.46880 * 299.99515 * 15 14 13 36 36 H 1.09002 * 109.47279 * 59.99753 * 16 15 14 37 37 H 1.08995 * 109.47424 * 299.99932 * 16 15 14 38 38 H 1.08000 * 125.96340 * 359.97438 * 18 17 16 39 39 H 1.08002 * 125.52127 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5379 -0.0109 -2.4797 6 1 0.9166 0.8670 -2.3807 7 6 1.8706 -0.4823 -3.7320 8 7 1.4319 0.1374 -4.8058 9 14 2.9445 -2.0010 -3.9032 10 1 2.0860 -3.2119 -3.9481 11 1 3.7361 -1.9087 -5.1562 12 1 3.8652 -2.0899 -2.7415 13 6 2.0399 -0.7212 1.2493 14 7 1.5502 -0.0287 2.4487 15 6 2.0217 -0.6944 3.6704 16 6 1.4930 0.0542 4.8955 17 7 1.9627 -0.6101 6.1139 18 6 2.6448 -0.0474 7.1264 19 7 2.8770 -0.9717 8.0228 20 6 2.3603 -2.1319 7.6198 21 7 1.7947 -1.9624 6.4536 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9563 0.8899 28 1 3.1301 -0.7217 -1.2489 29 1 1.6767 -1.7489 -1.2492 30 1 1.6663 -0.1940 -5.6867 31 1 3.1299 -0.7208 1.2496 32 1 1.6766 -1.7489 1.2493 33 1 1.8196 0.9437 2.4401 34 1 3.1116 -0.6939 3.6870 35 1 1.6585 -1.7219 3.6874 36 1 0.4032 0.0540 4.8791 37 1 1.8564 1.0816 4.8783 38 1 2.9489 0.9871 7.1888 39 1 2.4060 -3.0626 8.1658 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164458141.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:41:21 Heat of formation + Delta-G solvation = 79.111005 kcal Electronic energy + Delta-G solvation = -18200.915959 eV Core-core repulsion = 15373.191822 eV Total energy + Delta-G solvation = -2827.724137 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.27834 -38.04155 -35.75676 -33.47495 -32.12202 -31.44906 -28.98372 -27.53168 -26.44612 -25.25759 -23.42042 -22.26619 -21.83296 -21.42950 -18.04223 -17.48001 -16.85524 -16.44537 -15.40299 -15.29377 -14.75255 -14.53433 -14.21471 -13.88871 -13.66892 -13.11847 -12.85117 -12.65308 -12.43258 -12.19449 -11.88631 -11.48994 -11.11763 -10.99000 -10.90380 -10.54675 -10.44639 -10.28164 -10.05661 -9.96200 -9.84693 -9.72322 -9.35431 -8.95227 -8.52593 -8.39636 -6.02863 -3.99348 1.38297 2.02270 2.71903 3.30378 3.38181 3.41077 4.00829 4.05333 4.31728 4.45809 4.65510 4.73986 4.91906 4.99908 5.29992 5.41198 5.48046 5.61284 5.68141 5.80255 5.95882 6.05267 6.15177 6.18304 6.33039 6.51830 6.52011 6.60887 6.74139 6.95768 7.04288 7.10562 7.18405 7.26991 7.36389 7.46810 7.81696 7.81970 8.56261 9.02659 9.60205 11.10192 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.043984 B = 0.003557 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.437147 B = 7869.007336 C = 8195.353176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.049 4.049 3 C -0.131 4.131 4 C -0.005 4.005 5 C -0.508 4.508 6 H 0.078 0.922 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.876 3.124 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.268 1.268 13 C 0.070 3.930 14 N -0.682 5.682 15 C 0.049 3.951 16 C 0.130 3.870 17 N -0.374 5.374 18 C 0.252 3.748 19 N -0.551 5.551 20 C 0.193 3.807 21 N -0.314 5.314 22 H 0.044 0.956 23 H 0.061 0.939 24 H 0.039 0.961 25 H 0.040 0.960 26 H 0.071 0.929 27 H 0.035 0.965 28 H 0.012 0.988 29 H 0.011 0.989 30 H 0.262 0.738 31 H 0.025 0.975 32 H 0.068 0.932 33 H 0.340 0.660 34 H 0.031 0.969 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.218 0.782 39 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.943 0.770 21.303 21.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.050 4.050 3 C -0.188 4.188 4 C -0.042 4.042 5 C -0.546 4.546 6 H 0.096 0.904 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.059 4.059 14 N -0.314 5.314 15 C -0.082 4.082 16 C 0.008 3.992 17 N -0.165 5.165 18 C -0.045 4.045 19 N -0.278 5.278 20 C -0.110 4.110 21 N -0.142 5.142 22 H 0.063 0.937 23 H 0.080 0.920 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.090 0.910 27 H 0.054 0.946 28 H 0.031 0.969 29 H 0.029 0.971 30 H 0.072 0.928 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.159 0.841 34 H 0.049 0.951 35 H 0.104 0.896 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.234 0.766 39 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 1.129 -0.043 20.931 20.961 hybrid contribution 1.608 -0.392 -0.367 1.695 sum 2.737 -0.435 20.563 20.749 Atomic orbital electron populations 1.21622 0.94400 1.00778 1.00756 1.20435 0.96306 0.95077 0.93135 1.21787 0.99616 0.96384 1.01019 1.19629 0.95826 0.95508 0.93271 1.21121 1.31538 1.13283 0.88657 0.90392 1.25014 0.95785 0.96733 0.96027 1.69905 1.46071 1.40632 0.97850 0.86849 0.81284 0.84057 0.77473 1.20398 1.21538 1.19233 1.22153 0.96431 0.98267 0.89034 1.60489 1.63631 1.06470 1.00844 1.22122 0.97338 0.99813 0.88886 1.21837 1.01746 0.95324 0.80334 1.50566 1.41567 1.07044 1.17352 1.26088 0.93115 1.00601 0.84716 1.70541 1.26914 0.99975 1.30405 1.26029 0.95215 0.98004 0.91708 1.78091 1.25274 0.93792 1.17037 0.93678 0.92025 0.94151 0.94119 0.91015 0.94604 0.96943 0.97113 0.92850 0.95654 0.91313 0.84091 0.95105 0.89623 0.88111 0.88140 0.76560 0.76764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.17 8.06 37.16 0.30 -1.87 16 2 C -0.05 -0.90 0.60 -154.51 -0.09 -1.00 16 3 C -0.13 -2.25 7.89 37.16 0.29 -1.95 16 4 C 0.00 -0.10 3.11 -27.88 -0.09 -0.19 16 5 C -0.51 -13.78 8.20 -34.44 -0.28 -14.07 16 6 H 0.08 2.25 5.92 -52.49 -0.31 1.94 16 7 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.91 -27.50 13.96 55.43 0.77 -26.73 16 9 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 13 C 0.07 1.08 4.65 -3.83 -0.02 1.06 16 14 N -0.68 -8.31 5.71 -113.78 -0.65 -8.96 16 15 C 0.05 0.52 5.89 -3.82 -0.02 0.50 16 16 C 0.13 1.05 6.81 -4.04 -0.03 1.02 16 17 N -0.37 -3.64 3.69 -62.63 -0.23 -3.87 16 18 C 0.25 2.13 12.63 -90.65 -1.14 0.99 16 19 N -0.55 -5.92 11.19 -15.83 -0.18 -6.09 16 20 C 0.19 2.00 13.03 -91.81 -1.20 0.80 16 21 N -0.31 -3.72 12.56 29.29 0.37 -3.36 16 22 H 0.04 0.73 7.60 -51.93 -0.39 0.33 16 23 H 0.06 1.27 6.62 -51.93 -0.34 0.92 16 24 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 27 H 0.04 0.50 6.57 -51.93 -0.34 0.16 16 28 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 29 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.34 3.71 6.77 -39.29 -0.27 3.44 16 34 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.10 0.51 8.09 -51.93 -0.42 0.09 16 38 H 0.22 0.84 8.06 -52.49 -0.42 0.41 16 39 H 0.22 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 316.07 15.07 4.76 4.76 Total: -1.00 -32.44 316.07 -8.36 -40.80 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -6.16 Total: -0.54 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -2.38 Total: -12.95 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: 0.08 Total: -49.01 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.44 -8.36 -40.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164458141.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.913 kcal (2) G-P(sol) polarization free energy of solvation -32.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds