Wall clock time and date at job start Sun Mar 29 2020 23:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47239 * 2 1 4 4 C 1.52996 * 109.47509 * 239.99716 * 2 1 3 5 5 C 1.50703 * 109.47178 * 60.00427 * 4 2 1 6 6 H 1.07996 * 119.99914 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00225 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99955 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 119.99858 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47500 * 90.00253 * 9 7 5 11 11 H 1.48501 * 109.46855 * 210.00307 * 9 7 5 12 12 H 1.48497 * 109.47264 * 329.99955 * 9 7 5 13 13 C 1.52998 * 109.46919 * 119.99614 * 2 1 3 14 14 N 1.46896 * 109.47432 * 300.00333 * 13 2 1 15 15 C 1.46900 * 111.00259 * 180.02562 * 14 13 2 16 16 C 1.52999 * 109.47152 * 179.97438 * 15 14 13 17 17 N 1.46500 * 109.47084 * 179.97438 * 16 15 14 18 18 C 1.34429 * 126.81895 * 124.99739 * 17 16 15 19 19 N 1.30837 * 108.07952 * 180.02562 * 18 17 16 20 20 C 1.33246 * 109.82318 * 359.97438 * 19 18 17 21 21 N 1.30712 * 108.94935 * 0.27015 * 20 19 18 22 22 H 1.08997 * 109.47489 * 300.00634 * 1 2 3 23 23 H 1.09005 * 109.46746 * 60.00713 * 1 2 3 24 24 H 1.09000 * 109.47193 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47121 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.47052 * 299.99942 * 3 2 1 27 27 H 1.08997 * 109.46950 * 59.99602 * 3 2 1 28 28 H 1.09000 * 109.47351 * 180.02562 * 4 2 1 29 29 H 1.09000 * 109.47425 * 300.00510 * 4 2 1 30 30 H 0.97001 * 119.99808 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47194 * 180.02562 * 13 2 1 32 32 H 1.09003 * 109.47306 * 60.00336 * 13 2 1 33 33 H 1.00902 * 110.99889 * 303.95386 * 14 13 2 34 34 H 1.09002 * 109.47230 * 59.99541 * 15 14 13 35 35 H 1.08996 * 109.46880 * 299.99515 * 15 14 13 36 36 H 1.09002 * 109.47279 * 59.99753 * 16 15 14 37 37 H 1.08995 * 109.47424 * 299.99932 * 16 15 14 38 38 H 1.08000 * 125.96340 * 359.97438 * 18 17 16 39 39 H 1.08002 * 125.52127 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5379 -0.0109 -2.4797 6 1 0.9166 0.8670 -2.3807 7 6 1.8706 -0.4823 -3.7320 8 7 1.4319 0.1374 -4.8058 9 14 2.9445 -2.0010 -3.9032 10 1 2.0860 -3.2119 -3.9481 11 1 3.7361 -1.9087 -5.1562 12 1 3.8652 -2.0899 -2.7415 13 6 2.0399 -0.7212 1.2493 14 7 1.5502 -0.0287 2.4487 15 6 2.0217 -0.6944 3.6704 16 6 1.4930 0.0542 4.8955 17 7 1.9627 -0.6101 6.1139 18 6 2.6448 -0.0474 7.1264 19 7 2.8770 -0.9717 8.0228 20 6 2.3603 -2.1319 7.6198 21 7 1.7947 -1.9624 6.4536 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9563 0.8899 28 1 3.1301 -0.7217 -1.2489 29 1 1.6767 -1.7489 -1.2492 30 1 1.6663 -0.1940 -5.6867 31 1 3.1299 -0.7208 1.2496 32 1 1.6766 -1.7489 1.2493 33 1 1.8196 0.9437 2.4401 34 1 3.1116 -0.6939 3.6870 35 1 1.6585 -1.7219 3.6874 36 1 0.4032 0.0540 4.8791 37 1 1.8564 1.0816 4.8783 38 1 2.9489 0.9871 7.1888 39 1 2.4060 -3.0626 8.1658 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164458141.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:41:20 Heat of formation + Delta-G solvation = 58.781411 kcal Electronic energy + Delta-G solvation = -18201.797516 eV Core-core repulsion = 15373.191822 eV Total energy + Delta-G solvation = -2828.605694 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.165 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.95942 -39.35890 -36.80785 -34.79655 -33.83255 -32.16074 -30.21517 -29.08730 -27.90849 -26.51462 -24.56801 -23.43863 -22.84666 -22.18072 -19.51919 -18.87795 -18.18194 -17.35289 -16.41717 -16.23606 -16.01611 -15.86848 -15.22370 -15.17337 -14.73120 -14.60028 -14.25067 -13.95939 -13.83084 -13.28107 -13.18632 -12.77155 -12.74847 -12.49696 -12.25705 -12.16249 -12.04821 -11.72977 -11.37359 -11.07363 -10.98005 -10.87136 -10.78684 -10.71050 -10.58811 -9.41637 -8.22788 -6.22799 0.72021 1.34731 1.36131 1.39957 1.46621 2.02790 2.38187 3.12434 3.15183 3.54850 3.60664 3.96365 4.05269 4.12188 4.19855 4.24328 4.32283 4.37729 4.68533 4.72638 4.82450 4.87530 4.90042 5.04496 5.09285 5.19623 5.29051 5.37382 5.45508 5.48775 5.52827 5.61082 5.76154 5.81077 5.91768 5.97320 6.40347 6.48498 6.84800 7.13723 7.39838 8.93357 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.043984 B = 0.003557 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.437147 B = 7869.007336 C = 8195.353176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.049 4.049 3 C -0.125 4.125 4 C -0.005 4.005 5 C -0.502 4.502 6 H 0.047 0.953 7 C 0.002 3.998 8 N -0.954 5.954 9 Si 0.938 3.062 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.251 1.251 13 C 0.082 3.918 14 N -0.677 5.677 15 C 0.057 3.943 16 C 0.134 3.866 17 N -0.381 5.381 18 C 0.261 3.739 19 N -0.581 5.581 20 C 0.189 3.811 21 N -0.355 5.355 22 H 0.071 0.929 23 H 0.028 0.972 24 H 0.034 0.966 25 H 0.044 0.956 26 H 0.036 0.964 27 H 0.074 0.926 28 H 0.012 0.988 29 H 0.008 0.992 30 H 0.262 0.738 31 H 0.028 0.972 32 H 0.060 0.940 33 H 0.352 0.648 34 H 0.030 0.970 35 H 0.062 0.938 36 H 0.099 0.901 37 H 0.140 0.860 38 H 0.262 0.738 39 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.981 0.960 23.676 23.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.049 4.049 3 C -0.182 4.182 4 C -0.043 4.043 5 C -0.540 4.540 6 H 0.065 0.935 7 C -0.194 4.194 8 N -0.596 5.596 9 Si 0.763 3.237 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.174 1.174 13 C -0.047 4.047 14 N -0.311 5.311 15 C -0.073 4.073 16 C 0.013 3.987 17 N -0.172 5.172 18 C -0.035 4.035 19 N -0.309 5.309 20 C -0.113 4.113 21 N -0.184 5.184 22 H 0.090 0.910 23 H 0.047 0.953 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.092 0.908 28 H 0.031 0.969 29 H 0.026 0.974 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.172 0.828 34 H 0.048 0.952 35 H 0.080 0.920 36 H 0.117 0.883 37 H 0.158 0.842 38 H 0.277 0.723 39 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 2.165 0.154 23.326 23.427 hybrid contribution 1.236 -0.371 -1.059 1.669 sum 3.400 -0.217 22.267 22.526 Atomic orbital electron populations 1.21531 0.94514 1.00279 1.00411 1.20358 0.96158 0.95705 0.92705 1.21705 0.99831 0.95463 1.01198 1.19613 0.95631 0.95329 0.93702 1.21431 1.30041 1.12199 0.90375 0.93450 1.25897 0.97589 1.00078 0.95847 1.70055 1.48283 1.42810 0.98446 0.85832 0.79750 0.80162 0.77912 1.19801 1.21399 1.17427 1.21838 0.96382 0.97612 0.88885 1.60346 1.63556 1.06973 1.00212 1.21990 0.97164 0.98929 0.89211 1.21896 1.01693 0.96533 0.78596 1.50633 1.42004 1.06526 1.18038 1.26959 0.91241 1.01848 0.83450 1.70567 1.28066 1.00611 1.31663 1.26537 0.94412 0.98909 0.91453 1.78029 1.26758 0.95543 1.18027 0.90974 0.95263 0.94722 0.93679 0.94483 0.90772 0.96931 0.97366 0.92889 0.95382 0.92141 0.82757 0.95209 0.91952 0.88310 0.84193 0.72273 0.74697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.96 8.06 71.98 0.58 -3.38 16 2 C -0.05 -1.73 0.60 -52.18 -0.03 -1.76 16 3 C -0.12 -4.09 7.89 71.98 0.57 -3.52 16 4 C 0.00 -0.22 3.11 29.85 0.09 -0.13 16 5 C -0.50 -27.83 8.20 25.60 0.21 -27.62 16 6 H 0.05 2.86 5.92 -2.91 -0.02 2.84 16 7 C 0.00 0.10 5.47 84.66 0.46 0.56 16 8 N -0.95 -59.66 13.96 21.45 0.30 -59.36 16 9 Si 0.94 44.63 27.47 68.60 1.88 46.51 16 10 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 11 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 12 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 13 C 0.08 2.35 4.65 86.30 0.40 2.75 16 14 N -0.68 -14.34 5.71 -513.90 -2.94 -17.28 16 15 C 0.06 1.07 5.89 86.30 0.51 1.58 16 16 C 0.13 1.71 6.81 86.38 0.59 2.29 16 17 N -0.38 -6.43 3.69 -352.06 -1.30 -7.73 16 18 C 0.26 3.60 12.63 180.36 2.28 5.87 16 19 N -0.58 -11.31 11.19 -203.99 -2.28 -13.60 16 20 C 0.19 3.68 13.03 180.76 2.36 6.03 16 21 N -0.36 -7.98 12.56 -61.24 -0.77 -8.75 16 22 H 0.07 2.17 7.60 -2.39 -0.02 2.16 16 23 H 0.03 1.21 6.62 -2.38 -0.02 1.20 16 24 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.04 1.46 6.62 -2.39 -0.02 1.45 16 27 H 0.07 1.83 6.57 -2.39 -0.02 1.82 16 28 H 0.01 0.56 7.20 -2.39 -0.02 0.55 16 29 H 0.01 0.37 7.57 -2.39 -0.02 0.35 16 30 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 31 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.35 6.14 6.77 -89.69 -0.61 5.53 16 34 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.14 0.68 8.09 -2.39 -0.02 0.66 16 38 H 0.26 0.78 8.06 -2.91 -0.02 0.75 16 39 H 0.24 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -72.55 316.07 3.27 -69.27 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 0.37 Total: 8.26 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: 8.01 Total: -17.32 kcal Atomic # 7 Polarization: -99.73 SS G_CDS: -6.99 Total: -106.72 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.88 Total: 46.51 kcal Total: -72.55 3.27 -69.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164458141.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.055 kcal (2) G-P(sol) polarization free energy of solvation -72.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds