Wall clock time and date at job start Sun Mar 29 2020 22:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46899 * 109.46856 * 2 1 4 4 C 1.46892 * 111.00059 * 297.92118 * 3 2 1 5 5 C 1.50698 * 109.47524 * 292.99921 * 4 3 2 6 6 H 1.08003 * 119.99955 * 354.97455 * 5 4 3 7 7 C 1.37878 * 120.00519 * 174.97608 * 5 4 3 8 8 N 1.31517 * 119.99602 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00308 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47572 * 59.99777 * 9 7 5 11 11 H 1.48501 * 109.47045 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46919 * 299.99764 * 9 7 5 13 13 C 1.46896 * 111.00149 * 61.87958 * 3 2 1 14 14 C 1.53007 * 109.47341 * 66.04122 * 13 3 2 15 15 C 1.50697 * 109.47417 * 179.97438 * 14 13 3 16 16 C 1.41383 * 128.00602 * 90.00035 * 15 14 13 17 17 C 1.50702 * 126.79908 * 359.94481 * 16 15 14 18 18 N 1.30167 * 106.39899 * 179.97438 * 16 15 14 19 19 O 1.20928 * 111.60206 * 359.97438 * 18 16 15 20 20 C 1.34040 * 111.56602 * 359.76491 * 19 18 16 21 21 C 1.50697 * 126.77554 * 180.28365 * 20 19 18 22 22 H 1.08998 * 109.47502 * 179.84052 * 1 2 3 23 23 H 1.09008 * 109.47188 * 299.83756 * 1 2 3 24 24 H 1.08998 * 109.47093 * 59.83943 * 1 2 3 25 25 H 1.08998 * 109.46997 * 239.99848 * 2 1 3 26 26 H 1.08998 * 109.46603 * 120.00002 * 2 1 3 27 27 H 1.09003 * 109.47297 * 53.00520 * 4 3 2 28 28 H 1.09007 * 109.47110 * 172.99744 * 4 3 2 29 29 H 0.96999 * 120.00017 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.47265 * 306.04245 * 13 3 2 31 31 H 1.08994 * 109.47156 * 186.03886 * 13 3 2 32 32 H 1.08996 * 109.47199 * 300.00337 * 14 13 3 33 33 H 1.08998 * 109.46840 * 59.99863 * 14 13 3 34 34 H 1.08997 * 109.47267 * 90.00344 * 17 16 15 35 35 H 1.08999 * 109.47207 * 210.00038 * 17 16 15 36 36 H 1.09004 * 109.47374 * 330.00137 * 17 16 15 37 37 H 1.09004 * 109.47732 * 270.11306 * 21 20 19 38 38 H 1.09001 * 109.47393 * 30.11223 * 21 20 19 39 39 H 1.09004 * 109.47100 * 150.11426 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5896 2.0954 -1.2117 5 6 2.2715 1.4956 -2.4143 6 1 3.0163 0.7244 -2.2841 7 6 1.9447 1.9314 -3.6810 8 7 1.0374 2.8702 -3.8396 9 14 2.7895 1.1874 -5.1717 10 1 2.5224 -0.2727 -5.2147 11 1 2.2640 1.8228 -6.4068 12 1 4.2532 1.4204 -5.0787 13 6 1.5857 2.0968 1.2095 14 6 2.2556 1.4738 2.4360 15 6 1.8109 2.2044 3.6767 16 6 0.6988 1.9210 4.5023 17 6 -0.3019 0.8093 4.3186 18 7 0.7100 2.8109 5.4522 19 8 1.6389 3.5762 5.3344 20 6 2.3879 3.2806 4.2628 21 6 3.6259 4.0045 3.7999 22 1 -0.3634 -1.0276 -0.0029 23 1 -0.3634 0.5113 0.8915 24 1 -0.3633 0.5163 -0.8885 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.5092 2.0031 -1.3229 28 1 1.8577 3.1488 -1.1298 29 1 0.8072 3.1765 -4.7307 30 1 0.5030 2.0189 1.3082 31 1 1.8692 3.1466 1.1347 32 1 1.9722 0.4240 2.5108 33 1 3.3383 1.5517 2.3373 34 1 0.0410 -0.0795 4.8483 35 1 -1.2675 1.1200 4.7175 36 1 -0.4031 0.5832 3.2571 37 1 3.3446 4.8028 3.1130 38 1 4.1409 4.4308 4.6608 39 1 4.2877 3.3037 3.2910 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166245245.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:14 Heat of formation + Delta-G solvation = 47.996132 kcal Electronic energy + Delta-G solvation = -18907.968765 eV Core-core repulsion = 16046.602634 eV Total energy + Delta-G solvation = -2861.366130 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.82327 -37.70885 -35.29058 -33.64519 -32.62408 -30.59996 -29.22008 -28.63622 -27.53733 -26.02041 -23.72500 -22.86684 -21.10853 -20.00819 -19.07506 -17.55382 -16.82951 -16.19507 -15.36121 -15.10652 -14.50724 -14.04329 -13.91594 -13.47559 -13.28081 -13.03583 -12.88337 -12.81821 -12.55231 -12.22270 -12.00353 -11.93985 -11.68483 -11.27862 -11.06050 -10.84998 -10.73504 -10.54461 -10.47547 -10.03209 -9.85193 -9.63030 -9.27014 -8.90384 -8.42995 -7.19536 -6.02581 -4.03813 1.53921 2.28033 3.19191 3.32790 3.37187 3.39836 4.23523 4.42166 4.51873 4.86562 4.94101 5.24375 5.28414 5.32758 5.39869 5.44150 5.51053 5.60795 5.63376 5.73651 5.80635 5.84041 5.89049 5.97949 6.02776 6.13428 6.16751 6.40913 6.45077 6.53461 6.69947 6.90544 7.30936 7.44213 7.80876 8.10144 8.19693 8.35272 8.55579 9.04224 9.60384 11.08024 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.031906 B = 0.004799 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.364112 B = 5832.900618 C = 6287.198758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.059 3.941 3 N -0.535 5.535 4 C 0.189 3.811 5 C -0.505 4.505 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.900 5.900 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.059 3.941 14 C -0.038 4.038 15 C -0.188 4.188 16 C 0.022 3.978 17 C -0.076 4.076 18 N -0.374 5.374 19 O 0.091 5.909 20 C -0.035 4.035 21 C -0.072 4.072 22 H 0.046 0.954 23 H 0.044 0.956 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.052 0.948 27 H 0.003 0.997 28 H 0.023 0.977 29 H 0.261 0.739 30 H 0.028 0.972 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.599 -2.089 14.592 14.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.070 4.070 3 N -0.259 5.259 4 C 0.064 3.936 5 C -0.544 4.544 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.070 4.070 14 C -0.077 4.077 15 C -0.192 4.192 16 C -0.137 4.137 17 C -0.134 4.134 18 N -0.081 5.081 19 O 0.026 5.974 20 C -0.098 4.098 21 C -0.130 4.130 22 H 0.065 0.935 23 H 0.063 0.937 24 H 0.087 0.913 25 H 0.099 0.901 26 H 0.071 0.929 27 H 0.021 0.979 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.245 -1.737 15.491 15.638 hybrid contribution -0.299 -0.536 -1.538 1.656 sum 0.945 -2.273 13.953 14.169 Atomic orbital electron populations 1.22400 0.99550 1.00898 1.01999 1.21995 0.92040 0.91635 1.01281 1.62336 1.59192 1.01917 1.02408 1.19770 0.94756 0.93620 0.85453 1.21113 1.21951 1.21257 0.90073 0.91963 1.24979 0.95292 0.95261 0.99040 1.69949 1.32042 1.29185 1.22758 0.86587 0.79861 0.79255 0.81851 1.20316 1.21424 1.20183 1.21992 0.96847 0.98151 0.90029 1.19965 1.01150 0.98214 0.88326 1.21111 0.97355 0.99527 1.01220 1.23453 0.98561 0.98786 0.92894 1.20171 0.95825 0.93758 1.03601 1.73791 1.07006 1.04414 1.22853 1.84755 1.28999 1.43941 1.39665 1.24268 0.97786 0.98054 0.89732 1.20343 0.90418 1.00474 1.01751 0.93461 0.93740 0.91293 0.90120 0.92924 0.97948 0.95862 0.92919 0.95391 0.91648 0.90744 0.89967 0.90355 0.90771 0.89818 0.89279 0.90246 0.88741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.29 9.26 37.16 0.34 -2.95 16 2 C 0.06 1.08 5.67 -3.82 -0.02 1.06 16 3 N -0.53 -10.92 4.69 -236.08 -1.11 -12.02 16 4 C 0.19 4.76 4.53 -4.98 -0.02 4.74 16 5 C -0.51 -13.81 8.39 -34.44 -0.29 -14.10 16 6 H 0.06 1.69 7.37 -52.48 -0.39 1.30 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.37 13.29 55.43 0.74 -25.63 16 9 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 13 C 0.06 1.01 4.73 -3.82 -0.02 0.99 16 14 C -0.04 -0.54 5.47 -27.88 -0.15 -0.69 16 15 C -0.19 -2.60 5.58 -104.42 -0.58 -3.18 16 16 C 0.02 0.31 7.33 -82.10 -0.60 -0.29 16 17 C -0.08 -0.86 10.39 36.01 0.37 -0.48 16 18 N -0.37 -5.71 12.07 33.42 0.40 -5.30 16 19 O 0.09 1.30 11.20 17.17 0.19 1.49 16 20 C -0.04 -0.45 7.49 -35.31 -0.26 -0.72 16 21 C -0.07 -0.67 10.30 36.00 0.37 -0.30 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.04 0.71 6.20 -51.92 -0.32 0.39 16 24 H 0.07 1.42 6.29 -51.93 -0.33 1.09 16 25 H 0.08 1.63 6.98 -51.93 -0.36 1.27 16 26 H 0.05 0.82 6.39 -51.93 -0.33 0.49 16 27 H 0.00 0.07 6.02 -51.93 -0.31 -0.24 16 28 H 0.02 0.63 7.91 -51.93 -0.41 0.22 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.03 0.50 6.06 -51.93 -0.31 0.18 16 31 H 0.06 1.17 7.92 -51.93 -0.41 0.76 16 32 H 0.07 1.00 6.51 -51.93 -0.34 0.66 16 33 H 0.08 1.11 7.44 -51.93 -0.39 0.73 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.93 8.02 -51.93 -0.42 0.52 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.82 7.43 -51.93 -0.39 0.44 16 LS Contribution 316.26 15.07 4.77 4.77 Total: -1.00 -30.27 316.26 -6.95 -37.22 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -5.95 Total: -2.33 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -0.96 Total: -14.48 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 0.03 Total: -42.96 kcal Atomic # 8 Polarization: 1.30 SS G_CDS: 0.19 Total: 1.49 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.27 -6.95 -37.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166245245.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.215 kcal (2) G-P(sol) polarization free energy of solvation -30.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds