Wall clock time and date at job start Sun Mar 29 2020 22:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46899 * 109.46856 * 2 1 4 4 C 1.46892 * 111.00059 * 297.92118 * 3 2 1 5 5 C 1.50698 * 109.47524 * 292.99921 * 4 3 2 6 6 H 1.08003 * 119.99955 * 354.97455 * 5 4 3 7 7 C 1.37878 * 120.00519 * 174.97608 * 5 4 3 8 8 N 1.31517 * 119.99602 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00308 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47572 * 59.99777 * 9 7 5 11 11 H 1.48501 * 109.47045 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46919 * 299.99764 * 9 7 5 13 13 C 1.46896 * 111.00149 * 61.87958 * 3 2 1 14 14 C 1.53007 * 109.47341 * 66.04122 * 13 3 2 15 15 C 1.50697 * 109.47417 * 179.97438 * 14 13 3 16 16 C 1.41383 * 128.00602 * 90.00035 * 15 14 13 17 17 C 1.50702 * 126.79908 * 359.94481 * 16 15 14 18 18 N 1.30167 * 106.39899 * 179.97438 * 16 15 14 19 19 O 1.20928 * 111.60206 * 359.97438 * 18 16 15 20 20 C 1.34040 * 111.56602 * 359.76491 * 19 18 16 21 21 C 1.50697 * 126.77554 * 180.28365 * 20 19 18 22 22 H 1.08998 * 109.47502 * 179.84052 * 1 2 3 23 23 H 1.09008 * 109.47188 * 299.83756 * 1 2 3 24 24 H 1.08998 * 109.47093 * 59.83943 * 1 2 3 25 25 H 1.08998 * 109.46997 * 239.99848 * 2 1 3 26 26 H 1.08998 * 109.46603 * 120.00002 * 2 1 3 27 27 H 1.09003 * 109.47297 * 53.00520 * 4 3 2 28 28 H 1.09007 * 109.47110 * 172.99744 * 4 3 2 29 29 H 0.96999 * 120.00017 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.47265 * 306.04245 * 13 3 2 31 31 H 1.08994 * 109.47156 * 186.03886 * 13 3 2 32 32 H 1.08996 * 109.47199 * 300.00337 * 14 13 3 33 33 H 1.08998 * 109.46840 * 59.99863 * 14 13 3 34 34 H 1.08997 * 109.47267 * 90.00344 * 17 16 15 35 35 H 1.08999 * 109.47207 * 210.00038 * 17 16 15 36 36 H 1.09004 * 109.47374 * 330.00137 * 17 16 15 37 37 H 1.09004 * 109.47732 * 270.11306 * 21 20 19 38 38 H 1.09001 * 109.47393 * 30.11223 * 21 20 19 39 39 H 1.09004 * 109.47100 * 150.11426 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5896 2.0954 -1.2117 5 6 2.2715 1.4956 -2.4143 6 1 3.0163 0.7244 -2.2841 7 6 1.9447 1.9314 -3.6810 8 7 1.0374 2.8702 -3.8396 9 14 2.7895 1.1874 -5.1717 10 1 2.5224 -0.2727 -5.2147 11 1 2.2640 1.8228 -6.4068 12 1 4.2532 1.4204 -5.0787 13 6 1.5857 2.0968 1.2095 14 6 2.2556 1.4738 2.4360 15 6 1.8109 2.2044 3.6767 16 6 0.6988 1.9210 4.5023 17 6 -0.3019 0.8093 4.3186 18 7 0.7100 2.8109 5.4522 19 8 1.6389 3.5762 5.3344 20 6 2.3879 3.2806 4.2628 21 6 3.6259 4.0045 3.7999 22 1 -0.3634 -1.0276 -0.0029 23 1 -0.3634 0.5113 0.8915 24 1 -0.3633 0.5163 -0.8885 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.5092 2.0031 -1.3229 28 1 1.8577 3.1488 -1.1298 29 1 0.8072 3.1765 -4.7307 30 1 0.5030 2.0189 1.3082 31 1 1.8692 3.1466 1.1347 32 1 1.9722 0.4240 2.5108 33 1 3.3383 1.5517 2.3373 34 1 0.0410 -0.0795 4.8483 35 1 -1.2675 1.1200 4.7175 36 1 -0.4031 0.5832 3.2571 37 1 3.3446 4.8028 3.1130 38 1 4.1409 4.4308 4.6608 39 1 4.2877 3.3037 3.2910 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166245245.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:14 Heat of formation + Delta-G solvation = 29.441252 kcal Electronic energy + Delta-G solvation = -18908.773365 eV Core-core repulsion = 16046.602634 eV Total energy + Delta-G solvation = -2862.170730 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.88137 -39.24454 -36.46142 -34.80592 -34.50469 -31.83794 -30.87542 -29.59666 -28.73663 -27.59860 -25.19987 -24.56846 -22.36299 -21.05532 -20.57681 -18.63732 -18.31350 -17.90788 -16.88818 -16.67931 -16.15994 -15.27727 -15.14868 -14.79917 -14.33054 -14.22179 -13.99432 -13.82512 -13.71492 -13.62081 -13.31965 -13.09962 -13.09327 -13.03441 -12.60133 -12.52505 -12.29486 -12.16511 -11.87242 -11.78510 -11.28856 -11.25658 -10.75278 -10.55807 -10.01210 -8.88817 -8.15711 -6.25063 0.51276 1.22349 1.43695 1.46133 1.53915 2.22180 2.43509 3.17195 3.21339 3.43638 3.57046 3.87640 4.15482 4.23057 4.36015 4.39276 4.43644 4.54283 4.60620 4.63843 4.70567 4.72297 4.77971 4.81121 4.91858 4.96059 5.05469 5.12125 5.18239 5.22390 5.27661 5.36386 5.44419 5.56346 5.72012 6.12309 6.41129 6.70862 6.92402 7.31410 7.44571 8.94685 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.031906 B = 0.004799 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.364112 B = 5832.900618 C = 6287.198758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.058 3.942 3 N -0.539 5.539 4 C 0.204 3.796 5 C -0.517 4.517 6 H 0.063 0.937 7 C 0.002 3.998 8 N -0.937 5.937 9 Si 0.965 3.035 10 H -0.268 1.268 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.063 3.937 14 C -0.021 4.021 15 C -0.208 4.208 16 C 0.017 3.983 17 C -0.077 4.077 18 N -0.400 5.400 19 O 0.080 5.920 20 C -0.026 4.026 21 C -0.074 4.074 22 H 0.073 0.927 23 H 0.058 0.942 24 H 0.028 0.972 25 H 0.059 0.941 26 H 0.090 0.910 27 H -0.023 1.023 28 H -0.006 1.006 29 H 0.262 0.738 30 H 0.022 0.978 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.660 -3.436 15.219 15.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.070 4.070 3 N -0.262 5.262 4 C 0.077 3.923 5 C -0.555 4.555 6 H 0.081 0.919 7 C -0.196 4.196 8 N -0.578 5.578 9 Si 0.790 3.210 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.065 4.065 14 C -0.059 4.059 15 C -0.213 4.213 16 C -0.142 4.142 17 C -0.134 4.134 18 N -0.109 5.109 19 O 0.019 5.981 20 C -0.090 4.090 21 C -0.131 4.131 22 H 0.092 0.908 23 H 0.076 0.924 24 H 0.047 0.953 25 H 0.078 0.922 26 H 0.108 0.892 27 H -0.005 1.005 28 H 0.012 0.988 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.121 0.879 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.323 -3.088 16.144 16.600 hybrid contribution -0.637 -0.087 -1.668 1.788 sum 1.686 -3.174 14.476 14.916 Atomic orbital electron populations 1.22293 0.98804 1.02200 1.00649 1.22060 0.92674 0.90233 1.02021 1.62234 1.59428 1.02820 1.01713 1.19406 0.92989 0.92426 0.87446 1.21433 1.21884 1.21127 0.91095 0.91857 1.25865 0.95882 0.95593 1.02228 1.70085 1.33581 1.30650 1.23446 0.85502 0.78933 0.78719 0.77867 1.19259 1.21227 1.19290 1.21985 0.96855 0.97603 0.90061 1.19758 1.01184 0.98420 0.86547 1.21128 0.98065 1.00520 1.01573 1.23939 0.98903 0.98934 0.92406 1.20287 0.95468 0.93612 1.04030 1.73786 1.07905 1.05275 1.23971 1.84730 1.29131 1.44004 1.40248 1.24888 0.97943 0.97460 0.88669 1.20538 0.89210 1.00566 1.02805 0.90775 0.92359 0.95318 0.92238 0.89204 1.00490 0.98801 0.92899 0.95939 0.92882 0.89569 0.89143 0.88451 0.90345 0.89583 0.88895 0.87935 0.87847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.09 9.26 71.98 0.67 -5.42 16 2 C 0.06 2.05 5.67 86.30 0.49 2.54 16 3 N -0.54 -21.81 4.69 -900.82 -4.23 -26.04 16 4 C 0.20 10.56 4.53 85.56 0.39 10.95 16 5 C -0.52 -28.62 8.39 25.60 0.21 -28.40 16 6 H 0.06 3.42 7.37 -2.91 -0.02 3.40 16 7 C 0.00 0.11 5.46 84.65 0.46 0.57 16 8 N -0.94 -56.08 13.29 21.45 0.28 -55.80 16 9 Si 0.96 43.67 29.54 68.60 2.03 45.70 16 10 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 11 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 13 C 0.06 2.14 4.73 86.31 0.41 2.55 16 14 C -0.02 -0.55 5.47 29.85 0.16 -0.38 16 15 C -0.21 -5.42 5.58 -19.74 -0.11 -5.53 16 16 C 0.02 0.45 7.33 43.58 0.32 0.77 16 17 C -0.08 -1.58 10.39 71.24 0.74 -0.84 16 18 N -0.40 -11.86 12.07 -49.57 -0.60 -12.46 16 19 O 0.08 2.22 11.20 71.62 0.80 3.02 16 20 C -0.03 -0.63 7.49 25.04 0.19 -0.45 16 21 C -0.07 -1.22 10.30 71.24 0.73 -0.49 16 22 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 23 H 0.06 1.78 6.20 -2.38 -0.01 1.76 16 24 H 0.03 1.18 6.29 -2.39 -0.02 1.17 16 25 H 0.06 2.35 6.98 -2.39 -0.02 2.34 16 26 H 0.09 2.52 6.39 -2.39 -0.02 2.51 16 27 H -0.02 -1.27 6.02 -2.39 -0.01 -1.29 16 28 H -0.01 -0.35 7.91 -2.38 -0.02 -0.36 16 29 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 30 H 0.02 0.79 6.06 -2.39 -0.01 0.77 16 31 H 0.05 1.91 7.92 -2.39 -0.02 1.89 16 32 H 0.09 2.04 6.51 -2.39 -0.02 2.02 16 33 H 0.09 2.22 7.44 -2.39 -0.02 2.20 16 34 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.09 1.72 8.02 -2.38 -0.02 1.70 16 37 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.10 1.55 7.43 -2.39 -0.02 1.54 16 Total: -1.00 -66.08 316.26 3.98 -62.10 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: 1.03 Total: 7.61 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: 4.66 Total: -24.13 kcal Atomic # 7 Polarization: -89.76 SS G_CDS: -4.54 Total: -94.30 kcal Atomic # 8 Polarization: 2.22 SS G_CDS: 0.80 Total: 3.02 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -66.08 3.98 -62.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166245245.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.541 kcal (2) G-P(sol) polarization free energy of solvation -66.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds