Wall clock time and date at job start Sun Mar 29 2020 23:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46838 * 110.99812 * 2 1 4 4 C 1.53043 * 109.50286 * 185.90427 * 3 2 1 5 5 C 1.53109 * 109.24870 * 300.76901 * 4 3 2 6 6 C 1.53108 * 109.19762 * 57.68571 * 5 4 3 7 7 H 1.08999 * 109.86886 * 62.66846 * 6 5 4 8 8 C 1.53221 * 109.25573 * 182.89875 * 6 5 4 9 9 N 1.46925 * 108.76535 * 174.28214 * 8 6 5 10 10 C 1.34775 * 120.63038 * 126.37077 * 9 8 6 11 11 O 1.21682 * 120.00300 * 4.86780 * 10 9 8 12 12 C 1.46379 * 119.99717 * 184.58723 * 10 9 8 13 13 H 1.08005 * 119.99724 * 345.51238 * 12 10 9 14 14 C 1.40045 * 120.00109 * 165.50999 * 12 10 9 15 15 N 1.30670 * 120.00003 * 171.30804 * 14 12 10 16 16 Si 1.86800 * 119.99933 * 351.31107 * 14 12 10 17 17 H 1.48496 * 109.47201 * 85.29487 * 16 14 12 18 18 H 1.48502 * 109.47247 * 205.29707 * 16 14 12 19 19 H 1.48505 * 109.47229 * 325.29530 * 16 14 12 20 20 C 1.46923 * 118.73185 * 306.64143 * 9 8 6 21 21 C 1.52721 * 109.03155 * 53.25411 * 20 9 8 22 22 C 1.46837 * 111.00123 * 124.26809 * 2 1 3 23 23 H 1.08998 * 109.47195 * 294.24171 * 22 2 1 24 24 H 1.09000 * 109.47042 * 295.73087 * 1 2 3 25 25 H 1.09001 * 109.47573 * 55.72923 * 1 2 3 26 26 H 1.09001 * 109.46882 * 175.73550 * 1 2 3 27 27 H 1.09001 * 109.46441 * 305.91173 * 3 2 1 28 28 H 1.09001 * 109.46623 * 65.89298 * 3 2 1 29 29 H 1.09002 * 109.50607 * 60.69954 * 4 3 2 30 30 H 1.08995 * 109.51087 * 180.83618 * 4 3 2 31 31 H 1.09003 * 109.52096 * 297.76670 * 5 4 3 32 32 H 1.09000 * 109.51561 * 177.60435 * 5 4 3 33 33 H 1.09005 * 109.59000 * 54.49962 * 8 6 5 34 34 H 1.09000 * 109.71106 * 294.13933 * 8 6 5 35 35 H 0.97003 * 120.00048 * 180.02562 * 15 14 12 36 36 H 1.09001 * 109.58393 * 173.08834 * 20 9 8 37 37 H 1.09000 * 109.58842 * 293.51419 * 20 9 8 38 38 H 1.09000 * 109.57068 * 185.54619 * 21 20 9 39 39 H 1.08993 * 109.35136 * 65.49447 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5179 1.3337 -0.1484 5 6 4.1189 0.5369 1.0127 6 6 3.5187 -0.8716 1.0207 7 1 3.7837 -1.3925 0.1006 8 6 4.0644 -1.6467 2.2245 9 7 3.3800 -2.9445 2.3008 10 6 4.0862 -4.0913 2.3523 11 8 5.3003 -4.0554 2.4253 12 6 3.3923 -5.3799 2.3267 13 1 2.3274 -5.4233 2.5017 14 6 4.1092 -6.5564 2.0752 15 7 3.5290 -7.7183 2.2188 16 14 5.8948 -6.4645 1.5344 17 1 6.7696 -6.3633 2.7301 18 1 6.2435 -7.6877 0.7680 19 1 6.0909 -5.2693 0.6750 20 6 1.9110 -2.9686 2.3137 21 6 1.3894 -2.1775 1.1161 22 6 1.9953 -0.7719 1.1329 23 1 1.7316 -0.2736 2.0658 24 1 -0.3633 0.4462 0.9258 25 1 -0.3634 0.5787 -0.8492 26 1 -0.3633 -1.0248 -0.0764 27 1 1.5626 1.9260 -0.8324 28 1 1.7335 1.8604 0.9381 29 1 3.7801 0.8555 -1.0922 30 1 3.9101 2.3505 -0.1335 31 1 3.8894 1.0359 1.9542 32 1 5.1998 0.4714 0.8885 33 1 3.8787 -1.0814 3.1378 34 1 5.1361 -1.8052 2.1045 35 1 4.0256 -8.5332 2.0450 36 1 1.5620 -3.9992 2.2490 37 1 1.5462 -2.5143 3.2349 38 1 0.3031 -2.1062 1.1708 39 1 1.6751 -2.6859 0.1953 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167545073.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:05 Heat of formation + Delta-G solvation = -45.419364 kcal Electronic energy + Delta-G solvation = -19743.677582 eV Core-core repulsion = 16878.260652 eV Total energy + Delta-G solvation = -2865.416930 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.95333 -37.80175 -35.18483 -34.00858 -32.79809 -31.18448 -29.89534 -26.95206 -26.56173 -24.55157 -23.41622 -21.51055 -20.91359 -19.68357 -18.91914 -16.67568 -16.10747 -15.41601 -15.29888 -14.78934 -14.63896 -14.52296 -13.86242 -13.73373 -13.41954 -12.79153 -12.63654 -12.38478 -12.33998 -12.05489 -11.76573 -11.73527 -11.40359 -11.18668 -11.05240 -10.85053 -10.68149 -10.50344 -10.30558 -10.10719 -9.83309 -9.34575 -8.99988 -8.27586 -7.87218 -7.50927 -6.59829 -4.80884 3.47627 3.51011 3.75097 3.89792 4.17171 4.29053 4.58522 4.78944 4.87119 4.96571 5.06595 5.33294 5.34488 5.39897 5.44739 5.49695 5.55017 5.65383 5.71354 5.78486 5.85134 5.90261 5.93001 6.00492 6.06941 6.11547 6.23011 6.27699 6.42181 6.46923 6.56179 6.76193 7.08951 7.14764 7.19628 7.66573 7.90922 8.33460 8.74487 9.16766 10.06473 10.41039 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.032605 B = 0.006471 C = 0.005811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.558858 B = 4325.883727 C = 4817.658266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.540 5.540 3 C 0.057 3.943 4 C -0.115 4.115 5 C -0.115 4.115 6 C -0.092 4.092 7 H 0.082 0.918 8 C 0.126 3.874 9 N -0.631 5.631 10 C 0.555 3.445 11 O -0.617 6.617 12 C -0.533 4.533 13 H 0.091 0.909 14 C 0.102 3.898 15 N -0.829 5.829 16 Si 0.965 3.035 17 H -0.278 1.278 18 H -0.322 1.322 19 H -0.265 1.265 20 C 0.121 3.879 21 C -0.130 4.130 22 C 0.096 3.904 23 H 0.036 0.964 24 H 0.021 0.979 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.028 0.972 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.044 0.956 34 H 0.087 0.913 35 H 0.282 0.718 36 H 0.102 0.898 37 H 0.043 0.957 38 H 0.067 0.933 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.637 15.910 -3.824 17.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.265 5.265 3 C -0.071 4.071 4 C -0.153 4.153 5 C -0.153 4.153 6 C -0.112 4.112 7 H 0.100 0.900 8 C 0.001 3.999 9 N -0.365 5.365 10 C 0.365 3.635 11 O -0.509 6.509 12 C -0.569 4.569 13 H 0.109 0.891 14 C -0.115 4.115 15 N -0.459 5.459 16 Si 0.798 3.202 17 H -0.205 1.205 18 H -0.253 1.253 19 H -0.190 1.190 20 C -0.003 4.003 21 C -0.169 4.169 22 C -0.012 4.012 23 H 0.054 0.946 24 H 0.040 0.960 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.120 0.880 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.937 15.510 -4.187 16.807 hybrid contribution 0.186 0.455 0.551 0.739 sum -4.751 15.965 -3.636 17.049 Atomic orbital electron populations 1.22402 0.87705 1.02583 0.99857 1.61902 1.07280 1.13075 1.44211 1.22061 0.95787 0.89323 0.99883 1.21566 0.94347 0.99774 0.99628 1.21584 1.00253 0.95313 0.98157 1.21605 0.93651 0.95488 1.00484 0.90005 1.21270 0.98762 0.84665 0.95191 1.47675 1.05260 1.05165 1.78386 1.18328 0.85899 0.83862 0.75454 1.90198 1.15357 1.85788 1.59556 1.20776 0.97234 0.88357 1.50523 0.89146 1.25745 1.01389 0.94027 0.90386 1.69559 1.39508 0.98646 1.38216 0.85254 0.80981 0.74573 0.79405 1.20473 1.25318 1.18992 1.21405 0.81438 1.02051 0.95423 1.22034 0.99372 0.94581 1.00866 1.21613 0.94915 0.93995 0.90656 0.94560 0.96031 0.91835 0.90663 0.91152 0.95330 0.91089 0.91788 0.92361 0.91511 0.93823 0.89467 0.90846 0.88023 0.93862 0.91493 0.90569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.05 60.06 0.54 0.79 16 2 N -0.54 -7.00 4.74 -234.86 -1.11 -8.11 16 3 C 0.06 0.64 5.47 -3.84 -0.02 0.62 16 4 C -0.12 -1.27 6.10 -26.65 -0.16 -1.44 16 5 C -0.11 -1.46 5.27 -26.62 -0.14 -1.60 16 6 C -0.09 -1.45 2.33 -90.41 -0.21 -1.66 16 7 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 8 C 0.13 2.35 5.69 -3.70 -0.02 2.33 16 9 N -0.63 -13.81 2.98 -174.70 -0.52 -14.33 16 10 C 0.56 14.94 7.29 -12.99 -0.09 14.85 16 11 O -0.62 -18.08 11.85 5.20 0.06 -18.02 16 12 C -0.53 -15.06 9.32 -35.63 -0.33 -15.39 16 13 H 0.09 2.52 6.01 -52.48 -0.32 2.20 16 14 C 0.10 2.93 5.52 -17.37 -0.10 2.84 16 15 N -0.83 -23.65 13.92 55.55 0.77 -22.88 16 16 Si 0.97 25.77 25.88 -169.99 -4.40 21.37 16 17 H -0.28 -7.64 7.11 56.52 0.40 -7.24 16 18 H -0.32 -8.12 7.11 56.52 0.40 -7.72 16 19 H -0.26 -7.40 6.65 56.52 0.38 -7.03 16 20 C 0.12 2.22 6.32 -3.95 -0.02 2.19 16 21 C -0.13 -2.01 4.96 -26.83 -0.13 -2.14 16 22 C 0.10 1.39 1.68 -67.66 -0.11 1.28 16 23 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 26 H 0.07 0.82 6.18 -51.93 -0.32 0.50 16 27 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 28 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 1.80 7.03 -51.93 -0.37 1.44 16 35 H 0.28 7.40 8.29 -40.82 -0.34 7.06 16 36 H 0.10 2.02 5.35 -51.93 -0.28 1.74 16 37 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.88 6.24 -51.93 -0.32 0.56 16 39 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 294.06 15.07 4.43 4.43 Total: -1.00 -31.46 294.06 -7.83 -39.28 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -6.25 Total: -4.42 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -0.81 Total: 2.67 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: -0.86 Total: -45.32 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: 0.06 Total: -18.02 kcal Atomic # 14 Polarization: 25.77 SS G_CDS: -4.40 Total: 21.37 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.46 -7.83 -39.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167545073.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.136 kcal (2) G-P(sol) polarization free energy of solvation -31.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds