Wall clock time and date at job start Sun Mar 29 2020 23:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46838 * 110.99812 * 2 1 4 4 C 1.53043 * 109.50286 * 185.90427 * 3 2 1 5 5 C 1.53109 * 109.24870 * 300.76901 * 4 3 2 6 6 C 1.53108 * 109.19762 * 57.68571 * 5 4 3 7 7 H 1.08999 * 109.86886 * 62.66846 * 6 5 4 8 8 C 1.53221 * 109.25573 * 182.89875 * 6 5 4 9 9 N 1.46925 * 108.76535 * 174.28214 * 8 6 5 10 10 C 1.34775 * 120.63038 * 126.37077 * 9 8 6 11 11 O 1.21682 * 120.00300 * 4.86780 * 10 9 8 12 12 C 1.46379 * 119.99717 * 184.58723 * 10 9 8 13 13 H 1.08005 * 119.99724 * 345.51238 * 12 10 9 14 14 C 1.40045 * 120.00109 * 165.50999 * 12 10 9 15 15 N 1.30670 * 120.00003 * 171.30804 * 14 12 10 16 16 Si 1.86800 * 119.99933 * 351.31107 * 14 12 10 17 17 H 1.48496 * 109.47201 * 85.29487 * 16 14 12 18 18 H 1.48502 * 109.47247 * 205.29707 * 16 14 12 19 19 H 1.48505 * 109.47229 * 325.29530 * 16 14 12 20 20 C 1.46923 * 118.73185 * 306.64143 * 9 8 6 21 21 C 1.52721 * 109.03155 * 53.25411 * 20 9 8 22 22 C 1.46837 * 111.00123 * 124.26809 * 2 1 3 23 23 H 1.08998 * 109.47195 * 294.24171 * 22 2 1 24 24 H 1.09000 * 109.47042 * 295.73087 * 1 2 3 25 25 H 1.09001 * 109.47573 * 55.72923 * 1 2 3 26 26 H 1.09001 * 109.46882 * 175.73550 * 1 2 3 27 27 H 1.09001 * 109.46441 * 305.91173 * 3 2 1 28 28 H 1.09001 * 109.46623 * 65.89298 * 3 2 1 29 29 H 1.09002 * 109.50607 * 60.69954 * 4 3 2 30 30 H 1.08995 * 109.51087 * 180.83618 * 4 3 2 31 31 H 1.09003 * 109.52096 * 297.76670 * 5 4 3 32 32 H 1.09000 * 109.51561 * 177.60435 * 5 4 3 33 33 H 1.09005 * 109.59000 * 54.49962 * 8 6 5 34 34 H 1.09000 * 109.71106 * 294.13933 * 8 6 5 35 35 H 0.97003 * 120.00048 * 180.02562 * 15 14 12 36 36 H 1.09001 * 109.58393 * 173.08834 * 20 9 8 37 37 H 1.09000 * 109.58842 * 293.51419 * 20 9 8 38 38 H 1.09000 * 109.57068 * 185.54619 * 21 20 9 39 39 H 1.08993 * 109.35136 * 65.49447 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5179 1.3337 -0.1484 5 6 4.1189 0.5369 1.0127 6 6 3.5187 -0.8716 1.0207 7 1 3.7837 -1.3925 0.1006 8 6 4.0644 -1.6467 2.2245 9 7 3.3800 -2.9445 2.3008 10 6 4.0862 -4.0913 2.3523 11 8 5.3003 -4.0554 2.4253 12 6 3.3923 -5.3799 2.3267 13 1 2.3274 -5.4233 2.5017 14 6 4.1092 -6.5564 2.0752 15 7 3.5290 -7.7183 2.2188 16 14 5.8948 -6.4645 1.5344 17 1 6.7696 -6.3633 2.7301 18 1 6.2435 -7.6877 0.7680 19 1 6.0909 -5.2693 0.6750 20 6 1.9110 -2.9686 2.3137 21 6 1.3894 -2.1775 1.1161 22 6 1.9953 -0.7719 1.1329 23 1 1.7316 -0.2736 2.0658 24 1 -0.3633 0.4462 0.9258 25 1 -0.3634 0.5787 -0.8492 26 1 -0.3633 -1.0248 -0.0764 27 1 1.5626 1.9260 -0.8324 28 1 1.7335 1.8604 0.9381 29 1 3.7801 0.8555 -1.0922 30 1 3.9101 2.3505 -0.1335 31 1 3.8894 1.0359 1.9542 32 1 5.1998 0.4714 0.8885 33 1 3.8787 -1.0814 3.1378 34 1 5.1361 -1.8052 2.1045 35 1 4.0256 -8.5332 2.0450 36 1 1.5620 -3.9992 2.2490 37 1 1.5462 -2.5143 3.2349 38 1 0.3031 -2.1062 1.1708 39 1 1.6751 -2.6859 0.1953 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167545073.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:05 Heat of formation + Delta-G solvation = -67.322493 kcal Electronic energy + Delta-G solvation = -19744.627373 eV Core-core repulsion = 16878.260652 eV Total energy + Delta-G solvation = -2866.366721 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.26269 -39.53991 -36.80319 -35.15918 -34.91062 -32.61485 -31.22285 -28.89379 -27.51478 -26.05734 -24.69723 -22.76278 -22.28154 -20.83473 -20.62142 -18.62228 -18.01977 -16.93099 -16.52164 -16.16148 -16.09988 -15.84809 -15.30710 -14.91718 -14.90014 -14.49058 -14.14868 -13.89868 -13.73512 -13.54639 -13.28780 -13.14375 -12.78706 -12.66708 -12.48669 -12.27620 -12.13828 -11.86195 -11.68488 -11.61550 -11.22958 -11.16958 -10.90859 -9.99565 -9.30960 -9.20812 -8.80077 -7.00747 1.30706 1.34672 1.58023 2.06662 2.32381 2.65421 2.94462 3.31125 3.67402 3.75044 3.89092 4.10590 4.21543 4.24373 4.33100 4.38353 4.47978 4.57992 4.62048 4.72314 4.74749 4.78532 4.81058 4.85328 4.92359 4.99134 5.06948 5.09764 5.15318 5.18982 5.28813 5.35965 5.50819 5.67936 5.99283 6.17686 6.22001 6.24558 6.61827 7.12825 7.96750 8.25395 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.032605 B = 0.006471 C = 0.005811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.558858 B = 4325.883727 C = 4817.658266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.556 5.556 3 C 0.057 3.943 4 C -0.112 4.112 5 C -0.111 4.111 6 C -0.086 4.086 7 H 0.052 0.948 8 C 0.124 3.876 9 N -0.632 5.632 10 C 0.549 3.451 11 O -0.647 6.647 12 C -0.551 4.551 13 H 0.087 0.913 14 C 0.071 3.929 15 N -0.848 5.848 16 Si 1.008 2.992 17 H -0.292 1.292 18 H -0.297 1.297 19 H -0.289 1.289 20 C 0.118 3.882 21 C -0.120 4.120 22 C 0.104 3.896 23 H 0.046 0.954 24 H 0.030 0.970 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.037 0.963 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.292 0.708 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.745 18.176 -4.105 19.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.280 5.280 3 C -0.071 4.071 4 C -0.149 4.149 5 C -0.149 4.149 6 C -0.106 4.106 7 H 0.070 0.930 8 C 0.000 4.000 9 N -0.364 5.364 10 C 0.357 3.643 11 O -0.542 6.542 12 C -0.587 4.587 13 H 0.105 0.895 14 C -0.144 4.144 15 N -0.479 5.479 16 Si 0.841 3.159 17 H -0.219 1.219 18 H -0.226 1.226 19 H -0.216 1.216 20 C -0.006 4.006 21 C -0.159 4.159 22 C -0.004 4.004 23 H 0.064 0.936 24 H 0.049 0.951 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.106 0.894 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.114 0.886 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.088 17.788 -4.482 19.328 hybrid contribution 0.479 -0.180 0.653 0.830 sum -5.610 17.609 -3.829 18.873 Atomic orbital electron populations 1.22452 0.86246 1.02797 1.01068 1.61864 1.08696 1.14221 1.43268 1.22149 0.95514 0.88345 1.01077 1.21562 0.94628 1.00680 0.98060 1.21569 1.00120 0.93459 0.99768 1.21483 0.95142 0.96617 0.97334 0.92965 1.21453 0.97216 0.83596 0.97719 1.47676 1.06862 1.05061 1.76789 1.18299 0.85612 0.85107 0.75290 1.90165 1.16594 1.86636 1.60800 1.21006 0.97366 0.89346 1.51017 0.89479 1.26196 1.03211 0.94235 0.90782 1.69552 1.40395 0.99066 1.38864 0.84663 0.78695 0.74347 0.78241 1.21885 1.22608 1.21636 1.21570 0.79232 1.01791 0.97979 1.21925 1.01070 0.94750 0.98127 1.21432 0.93571 0.93567 0.91873 0.93650 0.95095 0.90228 0.91074 0.89386 0.94447 0.92275 0.89208 0.90981 0.91693 0.91615 0.92078 0.89788 0.90082 0.91426 0.88599 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.05 127.69 1.16 1.56 16 2 N -0.56 -12.80 4.74 -896.96 -4.25 -17.06 16 3 C 0.06 1.05 5.47 86.33 0.47 1.52 16 4 C -0.11 -2.14 6.10 30.65 0.19 -1.95 16 5 C -0.11 -2.58 5.27 30.67 0.16 -2.41 16 6 C -0.09 -2.62 2.33 -10.66 -0.02 -2.64 16 7 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 8 C 0.12 4.58 5.69 86.37 0.49 5.07 16 9 N -0.63 -27.79 2.98 -824.85 -2.46 -30.25 16 10 C 0.55 30.22 7.29 86.36 0.63 30.85 16 11 O -0.65 -38.90 11.85 -4.29 -0.05 -38.95 16 12 C -0.55 -31.79 9.32 24.83 0.23 -31.56 16 13 H 0.09 4.97 6.01 -2.91 -0.02 4.95 16 14 C 0.07 4.15 5.52 85.30 0.47 4.62 16 15 N -0.85 -48.52 13.92 21.83 0.30 -48.21 16 16 Si 1.01 53.85 25.88 68.60 1.78 55.63 16 17 H -0.29 -16.07 7.11 99.48 0.71 -15.37 16 18 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 19 H -0.29 -16.52 6.65 99.48 0.66 -15.85 16 20 C 0.12 4.22 6.32 86.21 0.54 4.76 16 21 C -0.12 -3.56 4.96 30.53 0.15 -3.41 16 22 C 0.10 2.77 1.68 44.98 0.08 2.85 16 23 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.03 0.51 8.14 -2.39 -0.02 0.50 16 25 H 0.08 1.21 8.09 -2.39 -0.02 1.19 16 26 H 0.07 1.34 6.18 -2.39 -0.01 1.33 16 27 H 0.09 1.35 8.08 -2.39 -0.02 1.33 16 28 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.09 1.29 8.14 -2.39 -0.02 1.28 16 31 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16 32 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 34 H 0.06 2.58 7.03 -2.39 -0.02 2.56 16 35 H 0.29 15.25 8.29 -92.71 -0.77 14.48 16 36 H 0.08 3.26 5.35 -2.39 -0.01 3.24 16 37 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.10 2.29 6.24 -2.39 -0.01 2.28 16 39 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -68.28 294.06 0.84 -67.43 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: 0.98 Total: 2.14 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 4.55 Total: 9.26 kcal Atomic # 7 Polarization: -89.11 SS G_CDS: -6.41 Total: -95.51 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: -0.05 Total: -38.95 kcal Atomic # 14 Polarization: 53.85 SS G_CDS: 1.78 Total: 55.63 kcal Total: -68.28 0.84 -67.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167545073.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.112 kcal (2) G-P(sol) polarization free energy of solvation -68.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds