Wall clock time and date at job start Sun Mar 29 2020 23:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42902 * 114.00336 * 2 1 4 4 H 1.09007 * 109.50548 * 29.99883 * 3 2 1 5 5 C 1.53117 * 109.53652 * 269.90404 * 3 2 1 6 6 C 1.53124 * 109.16104 * 182.38509 * 5 3 2 7 7 C 1.53036 * 109.27952 * 57.64898 * 6 5 3 8 8 N 1.46847 * 109.52498 * 300.82087 * 7 6 5 9 9 C 1.46898 * 110.99742 * 185.83784 * 8 7 6 10 10 C 1.53010 * 109.46669 * 169.88354 * 9 8 7 11 11 H 1.08998 * 109.46768 * 56.95309 * 10 9 8 12 12 C 1.47202 * 109.46917 * 296.95338 * 10 9 8 13 13 N 6.10465 * 108.29686 * 41.33478 * 2 1 3 14 14 C 1.52994 * 109.46670 * 176.95257 * 10 9 8 15 15 C 1.50706 * 109.46990 * 184.99927 * 14 10 9 16 16 H 1.07999 * 119.99855 * 0.02562 * 15 14 10 17 17 C 1.37872 * 119.99939 * 180.02562 * 15 14 10 18 18 N 1.31506 * 120.00437 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99630 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47155 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46737 * 120.00303 * 19 17 15 22 22 H 1.48501 * 109.46849 * 239.99922 * 19 17 15 23 23 C 1.46844 * 111.19541 * 61.74349 * 8 7 6 24 24 H 1.08992 * 109.47397 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47544 * 300.00495 * 1 2 3 26 26 H 1.09009 * 109.46800 * 59.99942 * 1 2 3 27 27 H 1.09001 * 109.52150 * 302.28467 * 5 3 2 28 28 H 1.09000 * 109.52628 * 62.47523 * 5 3 2 29 29 H 1.09002 * 109.49913 * 297.70419 * 6 5 3 30 30 H 1.09001 * 109.53193 * 177.61544 * 6 5 3 31 31 H 1.09006 * 109.46145 * 180.80309 * 7 6 5 32 32 H 1.09002 * 109.46144 * 60.84026 * 7 6 5 33 33 H 1.08994 * 109.47395 * 289.88216 * 9 8 7 34 34 H 1.08998 * 109.47020 * 49.89047 * 9 8 7 35 35 H 1.08993 * 109.47614 * 305.00251 * 14 10 9 36 36 H 1.09007 * 109.47375 * 65.00255 * 14 10 9 37 37 H 0.97004 * 120.00418 * 179.97438 * 18 17 15 38 38 H 1.08998 * 109.46696 * 178.24180 * 23 8 7 39 39 H 1.09002 * 109.46418 * 58.27507 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3454 1.9999 0.5137 5 6 2.2207 1.7722 -1.4430 6 6 2.8981 3.1454 -1.4333 7 6 4.2223 3.0503 -0.6721 8 7 3.9672 2.6008 0.7024 9 6 5.1984 2.6304 1.5030 10 6 4.8542 2.4027 2.9764 11 1 4.3216 1.4577 3.0831 12 6 4.0026 3.5030 3.4570 13 7 3.3454 4.3520 3.8280 14 6 6.1427 2.3577 3.8000 15 6 5.8135 2.0118 5.2294 16 1 4.7878 1.8407 5.5210 17 6 6.8217 1.9138 6.1647 18 7 8.0706 2.1227 5.8097 19 14 6.4135 1.4843 7.9363 20 1 4.9468 1.2990 8.0754 21 1 7.1088 0.2275 8.3137 22 1 6.8608 2.5844 8.8279 23 6 3.3602 1.2637 0.7196 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 2.8541 1.0574 -1.9683 28 1 1.2568 1.8450 -1.9466 29 1 2.2471 3.8688 -0.9422 30 1 3.0893 3.4648 -2.4578 31 1 4.7003 4.0297 -0.6511 32 1 4.8780 2.3371 -1.1717 33 1 5.8727 1.8449 1.1618 34 1 5.6828 3.6001 1.3888 35 1 6.8112 1.6019 3.3880 36 1 6.6305 3.3320 3.7651 37 1 8.7799 2.0541 6.4679 38 1 3.2120 0.9454 1.7515 39 1 4.0199 0.5588 0.2135 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171988755.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:31 Heat of formation + Delta-G solvation = -32.937140 kcal Electronic energy + Delta-G solvation = -18767.668813 eV Core-core repulsion = 15902.793153 eV Total energy + Delta-G solvation = -2864.875660 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.57338 -37.51066 -36.04087 -33.97252 -32.92860 -31.03441 -30.29898 -26.97856 -26.56275 -24.54860 -22.83166 -22.06205 -21.56530 -19.92077 -16.95522 -16.68404 -16.32153 -15.86278 -15.25590 -15.07063 -14.75203 -14.44064 -14.05397 -13.53819 -13.28696 -13.12769 -12.92169 -12.52180 -12.27569 -11.97883 -11.87652 -11.56864 -11.23555 -11.14276 -11.08422 -11.02664 -10.83444 -10.66096 -10.62597 -10.45986 -10.12417 -9.59065 -9.50789 -9.18179 -8.45036 -8.21988 -6.08617 -4.11519 3.29539 3.37664 3.41336 3.43692 3.75492 3.86402 4.21484 4.43183 4.68226 4.75497 4.90116 4.92556 5.07104 5.23738 5.24976 5.28268 5.29776 5.44544 5.52751 5.55579 5.57057 5.61586 5.75941 5.79884 5.86631 5.94577 6.02167 6.07126 6.21629 6.38765 6.51248 7.02361 7.15197 7.25384 7.44041 7.53915 7.86925 8.24427 8.60691 8.93409 9.54047 11.02371 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.026364 B = 0.004952 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.803662 B = 5652.657363 C = 6083.850158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.386 6.386 3 C 0.092 3.908 4 H 0.068 0.932 5 C -0.140 4.140 6 C -0.114 4.114 7 C 0.053 3.947 8 N -0.540 5.540 9 C 0.065 3.935 10 C 0.008 3.992 11 H 0.100 0.900 12 C 0.258 3.742 13 N -0.481 5.481 14 C 0.031 3.969 15 C -0.525 4.525 16 H 0.057 0.943 17 C 0.063 3.937 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.284 1.284 23 C 0.055 3.945 24 H 0.084 0.916 25 H 0.042 0.958 26 H 0.038 0.962 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.036 0.964 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.038 0.962 36 H 0.026 0.974 37 H 0.262 0.738 38 H 0.088 0.912 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.525 -2.793 -15.842 18.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.304 6.304 3 C 0.033 3.967 4 H 0.087 0.913 5 C -0.178 4.178 6 C -0.152 4.152 7 C -0.074 4.074 8 N -0.266 5.266 9 C -0.063 4.063 10 C -0.014 4.014 11 H 0.118 0.882 12 C -0.059 4.059 13 N -0.157 5.157 14 C -0.008 4.008 15 C -0.563 4.563 16 H 0.075 0.925 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.210 1.210 23 C -0.073 4.073 24 H 0.102 0.898 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.056 0.944 36 H 0.045 0.955 37 H 0.071 0.929 38 H 0.107 0.893 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.571 -1.358 -15.010 18.408 hybrid contribution 0.486 -0.903 0.538 1.158 sum -10.084 -2.261 -14.472 17.783 Atomic orbital electron populations 1.22760 0.81182 1.02518 0.99907 1.87864 1.19542 1.27931 1.95055 1.22092 0.95242 0.84180 0.95143 0.91345 1.22074 1.00985 0.97471 0.97281 1.21533 0.96904 0.96882 0.99876 1.22105 0.96548 1.00532 0.88253 1.61846 1.27797 1.25077 1.11834 1.22225 0.89726 1.02526 0.91839 1.19278 0.97014 0.91943 0.93120 0.88210 1.28827 0.92191 0.93686 0.91228 1.80970 1.11921 1.11882 1.10971 1.19179 0.88939 0.98715 0.93932 1.21176 0.93529 1.48057 0.93522 0.92461 1.24944 0.94969 0.95084 0.98942 1.69944 0.99278 1.49373 1.34470 0.86544 0.78658 0.78053 0.84884 1.19669 1.20858 1.20971 1.22072 0.93922 0.89717 1.01595 0.89759 0.93907 0.94343 0.91363 0.92030 0.91087 0.91271 0.90441 0.94590 0.92654 0.89921 0.94419 0.95526 0.92864 0.89340 0.93713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.82 101.05 1.09 1.40 16 2 O -0.39 -4.84 10.35 -35.23 -0.36 -5.21 16 3 C 0.09 1.11 2.77 -26.65 -0.07 1.04 16 4 H 0.07 0.87 7.79 -51.93 -0.40 0.47 16 5 C -0.14 -1.44 5.62 -26.61 -0.15 -1.59 16 6 C -0.11 -1.13 6.09 -26.65 -0.16 -1.29 16 7 C 0.05 0.60 5.46 -3.83 -0.02 0.58 16 8 N -0.54 -7.40 4.30 -234.67 -1.01 -8.41 16 9 C 0.07 0.98 4.34 -3.82 -0.02 0.96 16 10 C 0.01 0.16 2.11 -93.40 -0.20 -0.04 16 11 H 0.10 1.78 6.30 -51.93 -0.33 1.45 16 12 C 0.26 5.43 13.62 -20.76 -0.28 5.15 16 13 N -0.48 -10.97 18.54 42.15 0.78 -10.19 16 14 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 15 C -0.52 -14.04 8.60 -34.44 -0.30 -14.34 16 16 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 19 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 C 0.05 0.73 4.95 -3.83 -0.02 0.71 16 24 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.04 0.39 8.09 -51.93 -0.42 -0.03 16 26 H 0.04 0.31 7.95 -51.92 -0.41 -0.10 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.57 7.95 -51.93 -0.41 0.16 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.84 8.01 -51.93 -0.42 0.43 16 32 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 34 H 0.08 1.23 7.98 -51.93 -0.41 0.81 16 35 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.09 1.27 6.16 -51.93 -0.32 0.95 16 39 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 321.00 15.07 4.84 4.84 Total: -1.00 -30.31 321.00 -6.85 -37.16 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -6.46 Total: -4.55 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -0.35 Total: -5.18 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 0.51 Total: -43.45 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.36 Total: -5.21 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.31 -6.85 -37.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171988755.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.226 kcal (2) G-P(sol) polarization free energy of solvation -30.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds