Wall clock time and date at job start Sun Mar 29 2020 23:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42902 * 114.00336 * 2 1 4 4 H 1.09007 * 109.50548 * 29.99883 * 3 2 1 5 5 C 1.53117 * 109.53652 * 269.90404 * 3 2 1 6 6 C 1.53124 * 109.16104 * 182.38509 * 5 3 2 7 7 C 1.53036 * 109.27952 * 57.64898 * 6 5 3 8 8 N 1.46847 * 109.52498 * 300.82087 * 7 6 5 9 9 C 1.46898 * 110.99742 * 185.83784 * 8 7 6 10 10 C 1.53010 * 109.46669 * 169.88354 * 9 8 7 11 11 H 1.08998 * 109.46768 * 56.95309 * 10 9 8 12 12 C 1.47202 * 109.46917 * 296.95338 * 10 9 8 13 13 N 6.10465 * 108.29686 * 41.33478 * 2 1 3 14 14 C 1.52994 * 109.46670 * 176.95257 * 10 9 8 15 15 C 1.50706 * 109.46990 * 184.99927 * 14 10 9 16 16 H 1.07999 * 119.99855 * 0.02562 * 15 14 10 17 17 C 1.37872 * 119.99939 * 180.02562 * 15 14 10 18 18 N 1.31506 * 120.00437 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99630 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47155 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46737 * 120.00303 * 19 17 15 22 22 H 1.48501 * 109.46849 * 239.99922 * 19 17 15 23 23 C 1.46844 * 111.19541 * 61.74349 * 8 7 6 24 24 H 1.08992 * 109.47397 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47544 * 300.00495 * 1 2 3 26 26 H 1.09009 * 109.46800 * 59.99942 * 1 2 3 27 27 H 1.09001 * 109.52150 * 302.28467 * 5 3 2 28 28 H 1.09000 * 109.52628 * 62.47523 * 5 3 2 29 29 H 1.09002 * 109.49913 * 297.70419 * 6 5 3 30 30 H 1.09001 * 109.53193 * 177.61544 * 6 5 3 31 31 H 1.09006 * 109.46145 * 180.80309 * 7 6 5 32 32 H 1.09002 * 109.46144 * 60.84026 * 7 6 5 33 33 H 1.08994 * 109.47395 * 289.88216 * 9 8 7 34 34 H 1.08998 * 109.47020 * 49.89047 * 9 8 7 35 35 H 1.08993 * 109.47614 * 305.00251 * 14 10 9 36 36 H 1.09007 * 109.47375 * 65.00255 * 14 10 9 37 37 H 0.97004 * 120.00418 * 179.97438 * 18 17 15 38 38 H 1.08998 * 109.46696 * 178.24180 * 23 8 7 39 39 H 1.09002 * 109.46418 * 58.27507 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3454 1.9999 0.5137 5 6 2.2207 1.7722 -1.4430 6 6 2.8981 3.1454 -1.4333 7 6 4.2223 3.0503 -0.6721 8 7 3.9672 2.6008 0.7024 9 6 5.1984 2.6304 1.5030 10 6 4.8542 2.4027 2.9764 11 1 4.3216 1.4577 3.0831 12 6 4.0026 3.5030 3.4570 13 7 3.3454 4.3520 3.8280 14 6 6.1427 2.3577 3.8000 15 6 5.8135 2.0118 5.2294 16 1 4.7878 1.8407 5.5210 17 6 6.8217 1.9138 6.1647 18 7 8.0706 2.1227 5.8097 19 14 6.4135 1.4843 7.9363 20 1 4.9468 1.2990 8.0754 21 1 7.1088 0.2275 8.3137 22 1 6.8608 2.5844 8.8279 23 6 3.3602 1.2637 0.7196 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 2.8541 1.0574 -1.9683 28 1 1.2568 1.8450 -1.9466 29 1 2.2471 3.8688 -0.9422 30 1 3.0893 3.4648 -2.4578 31 1 4.7003 4.0297 -0.6511 32 1 4.8780 2.3371 -1.1717 33 1 5.8727 1.8449 1.1618 34 1 5.6828 3.6001 1.3888 35 1 6.8112 1.6019 3.3880 36 1 6.6305 3.3320 3.7651 37 1 8.7799 2.0541 6.4679 38 1 3.2120 0.9454 1.7515 39 1 4.0199 0.5588 0.2135 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171988755.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:30 Heat of formation + Delta-G solvation = -51.920505 kcal Electronic energy + Delta-G solvation = -18768.491993 eV Core-core repulsion = 15902.793153 eV Total energy + Delta-G solvation = -2865.698841 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.56600 -38.67762 -37.44021 -35.64937 -34.50930 -32.55458 -31.20593 -28.62474 -27.35935 -25.90630 -24.04283 -23.39201 -22.98418 -20.82794 -18.58327 -18.20858 -17.61834 -16.96828 -16.47947 -16.17332 -15.98162 -15.73584 -15.30907 -14.67002 -14.56101 -14.31652 -14.15838 -13.98292 -13.70961 -13.51744 -13.16868 -13.03549 -12.79642 -12.63010 -12.49829 -12.37174 -12.13506 -11.97540 -11.68949 -11.62453 -11.56292 -11.33256 -11.08515 -10.55590 -10.41521 -9.26917 -8.19548 -6.27627 1.39035 1.41989 1.52527 2.05965 2.13407 2.41004 2.51199 3.15892 3.23725 3.35463 3.80326 3.86130 4.06493 4.12610 4.23785 4.33313 4.42198 4.52015 4.53085 4.58915 4.65689 4.69962 4.83523 4.86133 4.88587 4.90639 5.00534 5.01997 5.08566 5.19853 5.39689 5.46534 5.61411 5.78967 6.02642 6.09825 6.22160 6.33618 6.82904 6.92874 7.41004 8.91598 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.026364 B = 0.004952 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.803662 B = 5652.657363 C = 6083.850158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.093 3.907 4 H 0.058 0.942 5 C -0.134 4.134 6 C -0.109 4.109 7 C 0.050 3.950 8 N -0.550 5.550 9 C 0.075 3.925 10 C 0.019 3.981 11 H 0.111 0.889 12 C 0.267 3.733 13 N -0.512 5.512 14 C 0.038 3.962 15 C -0.538 4.538 16 H 0.052 0.948 17 C 0.013 3.987 18 N -0.923 5.923 19 Si 0.948 3.052 20 H -0.271 1.271 21 H -0.272 1.272 22 H -0.284 1.284 23 C 0.054 3.946 24 H 0.099 0.901 25 H 0.040 0.960 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.035 0.965 36 H 0.004 0.996 37 H 0.264 0.736 38 H 0.072 0.928 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.194 -3.301 -17.006 20.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C 0.035 3.965 4 H 0.076 0.924 5 C -0.172 4.172 6 C -0.147 4.147 7 C -0.077 4.077 8 N -0.276 5.276 9 C -0.054 4.054 10 C -0.003 4.003 11 H 0.128 0.872 12 C -0.049 4.049 13 N -0.190 5.190 14 C -0.001 4.001 15 C -0.577 4.577 16 H 0.070 0.930 17 C -0.186 4.186 18 N -0.563 5.563 19 Si 0.774 3.226 20 H -0.195 1.195 21 H -0.198 1.198 22 H -0.210 1.210 23 C -0.074 4.074 24 H 0.117 0.883 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.053 0.947 36 H 0.023 0.977 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.253 -1.870 -16.186 19.802 hybrid contribution 0.666 -0.756 0.887 1.342 sum -10.588 -2.626 -15.299 18.790 Atomic orbital electron populations 1.22939 0.79680 1.03755 1.00508 1.87829 1.21247 1.28122 1.95228 1.22056 0.94245 0.84005 0.96222 0.92419 1.22026 1.01773 0.97519 0.95862 1.21521 0.95820 0.96455 1.00861 1.22217 0.97693 1.00884 0.86876 1.61801 1.27040 1.25403 1.13376 1.22059 0.90650 1.03193 0.89505 1.19212 0.94483 0.91686 0.94908 0.87159 1.29272 0.91749 0.93498 0.90364 1.80964 1.13003 1.12990 1.12013 1.18993 0.90781 0.97117 0.93175 1.21560 0.93225 1.47476 0.95404 0.93011 1.25685 0.94979 0.95258 1.02677 1.70029 1.00037 1.50481 1.35718 0.85653 0.78433 0.78043 0.80502 1.19510 1.19769 1.20993 1.22056 0.94837 0.89565 1.00891 0.88284 0.94139 0.92903 0.91167 0.90759 0.92002 0.88888 0.90018 0.93559 0.91179 0.89715 0.94666 0.97735 0.92680 0.90991 0.93369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.82 113.37 1.23 1.70 16 2 O -0.41 -9.67 10.35 -148.98 -1.54 -11.21 16 3 C 0.09 2.13 2.77 30.65 0.08 2.22 16 4 H 0.06 1.43 7.79 -2.38 -0.02 1.41 16 5 C -0.13 -2.43 5.62 30.67 0.17 -2.26 16 6 C -0.11 -1.88 6.09 30.65 0.19 -1.69 16 7 C 0.05 1.03 5.46 86.33 0.47 1.50 16 8 N -0.55 -14.32 4.30 -896.35 -3.86 -18.18 16 9 C 0.07 2.15 4.34 86.31 0.37 2.53 16 10 C 0.02 0.70 2.11 -12.60 -0.03 0.67 16 11 H 0.11 3.89 6.30 -2.39 -0.02 3.87 16 12 C 0.27 11.24 13.62 89.44 1.22 12.46 16 13 N -0.51 -23.39 18.54 20.01 0.37 -23.02 16 14 C 0.04 1.78 4.42 29.85 0.13 1.91 16 15 C -0.54 -28.89 8.60 25.60 0.22 -28.67 16 16 H 0.05 2.78 7.59 -2.91 -0.02 2.75 16 17 C 0.01 0.72 5.46 84.65 0.46 1.18 16 18 N -0.92 -53.13 13.29 21.44 0.28 -52.84 16 19 Si 0.95 43.79 29.54 68.60 2.03 45.82 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 22 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 23 C 0.05 1.39 4.95 86.33 0.43 1.82 16 24 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.04 0.71 8.09 -2.39 -0.02 0.69 16 26 H 0.05 0.75 7.95 -2.38 -0.02 0.73 16 27 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.07 1.17 7.95 -2.39 -0.02 1.15 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.60 8.01 -2.38 -0.02 1.58 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 1.83 8.12 -2.39 -0.02 1.81 16 34 H 0.08 2.42 7.98 -2.39 -0.02 2.40 16 35 H 0.04 1.65 8.14 -2.39 -0.02 1.64 16 36 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16 37 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 38 H 0.07 2.04 6.16 -2.39 -0.01 2.02 16 39 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -63.77 321.00 3.24 -60.53 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: 1.01 Total: 5.54 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 4.95 Total: -6.64 kcal Atomic # 7 Polarization: -90.84 SS G_CDS: -3.20 Total: -94.04 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: -1.54 Total: -11.21 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -63.77 3.24 -60.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171988755.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.611 kcal (2) G-P(sol) polarization free energy of solvation -63.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds